| mature miRNA: TTCTCTTCAAGGGTTGCCAGCTGGT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73870628|gb|DT473366.1|DT473366 WS01229.BR_H03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H03 5', mRNA sequence TTCTCTTCAAGGGTTGCCAGCTGGT EST sequence (targeted fragment marked with yellow): GGTTCAGTCACAATTACACATTGATAGATTAGGATTAGATAGCGAGAGTTCAAATAAACCGAAAGAAAGACGCAAATCGTGACCGTTAGGTTTTTTTTGGATCTGATCATGGACGCACGAGATTCGACATCGAACCGAGACGTCTCGTCGAGCGGCGGCAGCGGCACCACCACCGGCGTCGGAGGAGGAGAAGAGGATCCTATCCTTTCCGTCACTGCCACGCTTGCCAAAGACGCTTGGTTACACTTTAACTCTCGCCGGTTCAATGAGTGCCTCGAGGTTTTGTATCAGCTAAAGCAGAAAAAGGAAGACGATCCAAAGGTACTTCGTAATATTGCTATTGCGGAGTATAGTAGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAGTGCTTAATAACATTGAGGTGCTTCATAATATTGCTATTGCGGAGTATAGTAGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAGTGCTTAATAACATTGAGATTGCAACACTTGAAGAGAATAATCAGCTGATGACACCTCCAGAAAACCAGATGGCAACCCTTGAAGACAATAATCACTTGATTACTACTCCAGAATACCAGCTGGCAACCCTTGAAGAGAATAACCAGCTGATTACTACTCCAGAATACCAGATGGAAACATTTGAAGAAAACAATCATTCTATGCCTGCTCCTGAAACACAGCCTAACAAGAGGAGGAAAAGGAAGTCCATGGTTTGGGAACACTTCACCATAGAAACTGTAAGTGCTGATAGTAGAAGGGCTTTCTGTAAGCAGTGCAAGCAAAGCTTTGCATACAGCACAGGTTCAAAAGTAGCTGGTACCAGCCATCTTAAACGTCACATTGCCAAGGGAACTTGTCTAGCACTACTACGCAATCAGGGGAATCAACAAACACCTGGTACACCA | |||||||||
gi|73870628|gb|DT473366.1|DT473366 WS01229.BR_H03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H03 5', mRNA sequence TTCTCTTCAAGGGTTGCCAGCTGGT EST sequence (targeted fragment marked with yellow): GGTTCAGTCACAATTACACATTGATAGATTAGGATTAGATAGCGAGAGTTCAAATAAACCGAAAGAAAGACGCAAATCGTGACCGTTAGGTTTTTTTTGGATCTGATCATGGACGCACGAGATTCGACATCGAACCGAGACGTCTCGTCGAGCGGCGGCAGCGGCACCACCACCGGCGTCGGAGGAGGAGAAGAGGATCCTATCCTTTCCGTCACTGCCACGCTTGCCAAAGACGCTTGGTTACACTTTAACTCTCGCCGGTTCAATGAGTGCCTCGAGGTTTTGTATCAGCTAAAGCAGAAAAAGGAAGACGATCCAAAGGTACTTCGTAATATTGCTATTGCGGAGTATAGTAGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAGTGCTTAATAACATTGAGGTGCTTCATAATATTGCTATTGCGGAGTATAGTAGAGATGGTTATCCAGATCCAAAGAAGTTGCTTGAAGTGCTTAATAACATTGAGATTGCAACACTTGAAGAGAATAATCAGCTGATGACACCTCCAGAAAACCAGATGGCAACCCTTGAAGACAATAATCACTTGATTACTACTCCAGAATACCAGCTGGCAACCCTTGAAGAGAATAACCAGCTGATTACTACTCCAGAATACCAGATGGAAACATTTGAAGAAAACAATCATTCTATGCCTGCTCCTGAAACACAGCCTAACAAGAGGAGGAAAAGGAAGTCCATGGTTTGGGAACACTTCACCATAGAAACTGTAAGTGCTGATAGTAGAAGGGCTTTCTGTAAGCAGTGCAAGCAAAGCTTTGCATACAGCACAGGTTCAAAAGTAGCTGGTACCAGCCATCTTAAACGTCACATTGCCAAGGGAACTTGTCTAGCACTACTACGCAATCAGGGGAATCAACAAACACCTGGTACACCA | |||||||||