| mature miRNA: TTCTTCAGGCCATCCAGGCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73881318|gb|DT484056.1|DT484056 WS02524.B21_F05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_F05 3', mRNA sequence TTCTTCAGGCCATCCAGGCT EST sequence (targeted fragment marked with yellow): AAGAACAAAAGCACAGTGGAGAGTTTCTTGGAAGCTGCCGAAGCAAGAAAAAACGCAATCAATTCTGTTTTCTGGAATGACGAGATGGGACAGTGGCTCGATTACAGACTCACTAATGGCACTTTATGCAAGGAATCTGAAACATGGCAAGCTTGTAACCAAAATCAGAATGCATATGCTTCGAATTTTATTCCTTTGTGGATAGATTTGTTCCATGCAGATGCTGCTCTGGTGGAGAATGTCATGAGAAGTTTTCAAAGTTCAGGCCTGGTTCATGCTGCTGGAATTGCCACTTCTTTAATAAATTCAGGACACCAATGGGACTTTCCAAATGGCTGGGCTCCACTTCAACACATGATAGTTGAAGGTTTGCTGAGATCTGGATTGAAAGAAGCAAGGTCATTGGCAGAAGACATAGCTGTGAGGTGGATCAAAACCAACTACGTTGGATACAAGAAAACGGGTGCAATGCATGAAAAATACAATGTGCAAAAGTGTGGAGAATTTGGAGGAGGTGGATTTTACAAACCCCAGACTGGTTTTGGTTGGTCAAATGGAGTTGTATTGACATTTTTGGAGGAGTTTGGATGGCCTGAAGACCTGAGCATAGGTTGCTGATTGGTTAGGAAACTGAAGATTTGAATTTTTGATTCAACAGTTTCTTGTTGTGATCTTAGAGACTATAGGGCATTTTTTCCTCTTCAGTTCCTTGTGCTATTATTTTGATTTGATCATATGCTGATAGACCCCATAAAACACAATCAGTATTTTTTTCTTTATGTTTGTTGAAGATTGCTTCAGGACTACTACAAGTCCATAAAAGGGTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73891607|gb|DT494345.1|DT494345 WS01118.BR.1_C08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01118_C08 5', mRNA sequence TTCTTCAGGCCATCCAGGCT EST sequence (targeted fragment marked with yellow): GCTGTTGCACAGATAAGCAAACTCAGGATTGGACAGGTCTATGCAGCATCCGTGATGTATGGATACTTCCTAAAGCGAGTTGATCAAAGGTTTCAGCTTGAGAAGACAATGAAAATCCTGCCAAATGGTGTGGATGAGACAGAGAGTGATATTCACAAAGCTGTGGGTCAGGATGTGAAACCTGGTGGTCGAGGGTTATCCTATCAAGCTCTGTCTTCCCATCCTGAAGCCATTTCTGGTGGTATCAGTCCTGGAGGATTTGGACATGGATTAAAGGCTTCACGATTGCGAAATTATGTGATGTCTTTTGATGCGGAGACACTTCAAAGGTATGCGACAATAAGATCAAAAGAGGCTGTTAGCATCATTGAGAAGCACACTGAGGCCTTGTTTGGAAGACCTGAGATTGTCATAACGCCTCAAGGGACCATTGATACTTCCAAGGATGAAGTAGTTACGATCAGCTTAGGTGGTTTGAAGAGACTTGCTTTGGAAGCTGTTACTTTTGGTTCTTTCCTCTGGGATGTAGAGAGTTATGTGGATTCGAGGTATCACTTTGTTCTCAATTAAATAATGTTCACGTGCATGCAGGCCACAAAAAAAAAAAAAAAA | |||||||||
gi|73876302|gb|DT479040.1|DT479040 WS02524.BR_J12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J12 5', mRNA sequence TTCTTCAGGCCATCCAGGCT EST sequence (targeted fragment marked with yellow): GGCGCGCTCTCCATATCTGCTGCAAAATTTTCCGTTCTTGAAAGACCTAAAACCTAAAAAATCAACCAAATCTTTATTTAACACCCACCTCCTTACAAAACCCAGATTTTCTACTTGTCTCTTAATTGCCTTACTCATGGCTGAAGTTGATCAAGGCTTTGGTGAGCATGAAATTGATCATGGCGTGGACCTTTCTGCTGATCAAGGTGTTGGTCATCCTGTAGACCATGACTTGGATAATGCCACTGATCATGGCTTAGATCATGCAGTAGATCATAGCTTGGGTCATTCTGTGGATCATGGTTTGGATCATGCCACAGATCCTGGATTGGCAGTAGAGCATGACATTGATCACCCTATAGATCATCATGTGGATCCGTCTATAGACCATGATGTGGATCACCCTGTAAACCATGACATAGACCATGCTATTGATCAAGTGCCTGAGAATTTTGAGGCTTCAAAGCAAGGACAAGATGAGGATACAGTCTCTGGAGGAGGTAGTGAGAAGAGGTGGCCTGGATGGCCTGGAGAGAGTGTGTTTCGGATGTTGGTTCCTGCACAAAAAGTTGGCAGTATCATTGGCCGCAAAGGGGAGTTCATTAAAAAGATAGTCGAAGAGACAAGAGCTCGCATCAAGATACTTGATGGTCCTCCAGGGACGACAGANAGAGCTGTAATGGTATCTGCCAAGGAGGAGCCTGATTCTTCTCTTCCTCCTGCCATGGATGGCCTACTGAGGGTTCACAAACGCATTATTGATGGTTTGGAGGGTGATTCTTCTCATGCTCCACCAAGCAGT | |||||||||
gi|73882824|gb|DT485562.1|DT485562 WS02528.B21_I23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_I23 3', mRNA sequence TTCTTCAGGCCATCCAGGCT EST sequence (targeted fragment marked with yellow): TTCACAGTGAGCTACTAGAATCATGTATCATCAGTCTCCATATTGAATTACAGTTCCAAAAAAGGTAGAGCTAGAGGTGGTGAGGAGAAAAGGTACTATTATAATAATCATAATCATAATACATCATCAAGAAGTAGAAATGGAGGTGGTGATGAAATGATGATGATGAGTAATAGTATGAAGCCTGCATGGCTTGAAGGATTGATGGCAGAGACATTCTTTGGAGGTTGTGGGGTCCACGAGAATCGCAGAAAGAATGAGAAGAACGTCTTTTGCTTGCTCTGTTGCCTTAGTATCTGCCCTCACTGCCTTCCTTCTCATCGCTCTCATCCCCTCCTCCAGGTAAGGAGATACGTTTACCATGATGTGGTTCGCTTGGGGGATCTTGAGAAGCTCATTGACTGTTCTTATATTCAGCCCTATACAATAAACAATGCCAAGGTGATATTTCTGAATCAGAGACCACAGTCAAGGTCTTGTAAGGGTTCAGCCAACAATTGCTTCACTTGTGACAGGATACTCCAAGACCCATTCCACTTCTGTTCTCTCTCGTGCAAGGTTAATCACCTGGTGGATCAGGGGGAGGATCTCTCTGCTATTCTCTACAGGATTGATGAATCTGATTTTGCATTTTCCCAATTTGAGGGATTGAGGATGGACAGCTCCGAGATTATCGATGATGAAGGTCAAATCACCCCGAGCTCCATTCTTGAGAACCCATTACAATACAGAGGATCATCGTGCTCCAGTGACATCATGGGCAGCTCAGGAACTGCACATGAACCCGAGGTCCTGAAAAAGAAGGAAAAAAATGGCTTCCTTCAGGGGAATTTCTTCTCCTTGAGCAGCAGGCGAAAGGGATCTCCTCACAGGGCTCCTCTCTCTTAAATTAGACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73880916|gb|DT483654.1|DT483654 WS02523.B21_D06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_D06 3', mRNA sequence TTCTTCAGGCCATCCAGGCT EST sequence (targeted fragment marked with yellow): CATGATACTTGAAATGGATCTATGCCCGGATGATTCAGATTCATTTATTAATCATGAGGTCTCAAGGTATCAGAATGAAGATGCTACGAGGACAATTATAAGGTTGGAACAGTGTGCTCGATCTTCTATGCAAAGAGCCCTTGCATCTCAAGGAGCACTTGCTATCTTGTATGGGCGCCATTTGAAGCATTATATAAAGGACACCAAGGTTATGCTCGGCAGAGCAACAGATGATATGGATGTCGATATTGACTTGAAAAGAGAAGGGCCTGCCAACAAAATATCAAGACGGCAGGCACTCATAACGATGGAAGGAGATGGTTCTTTCTTTTTAAAAAATCTTGGTAGGATTCCGATATTTTTGAACGGCAAAGAACTCATGACTGGACAGAGTATGGGTCTGAGGTCAAGTAGTTTGATTGAGATAAGGGAAATGGCATTTGTGTTTGAAGTGAATAACAAATCTGTGAGGCAGCATCTCGCGAATGTCACCAAAAACCACAAAGAAAACAATTTCAAATTTGAATGGTCAGAACAAGGGAATAACCACCGAGAAACTGATATCAAGTTTGAATGGTCTGAAGGGGTTCCGTGACTAGAGAAATGTCATCAGCAGGTTCGTTTCTACTTTTTAAGCTTCCTAGGGCAGGGAAAAAAGTTTCATAGTATTGTACCCAAATTTCTTGCTAGCATTTGTATTGTCCATGTATAGACAATGTTATGCGGTACAAATAATTTATAGATAATCCATGTTATGTATATGAATAATAGTGGAACCCAAAGGTGAGAAATTAGAATAGCTGAATAGAAGTCATAGCTGGCAAGAACTGTTATGGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73889240|gb|DT491978.1|DT491978 WS02549.C21_F09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_F09 3', mRNA sequence TTCTTCAGGCCATCCAGGCT EST sequence (targeted fragment marked with yellow): GCAGTCCTGGAGGATTTGGACATGGATTAAAGGCTTCACGATTGCGAAATTATGTGATGTCTTTTGATGGGGAGACACTTCAAAGGTATGCGACAATAAGATCAAAAGAGGCTGTTAGCATCATTGAGAAGCACACTGAGGCCTTGTTTGGAAGACCTGAGATTGTCATAACGCCTCAAGGGACCATTGATACTTCCAAGGATGAACTAGTTACGATCAGCTTAGGTGGTTTGAAGAGACTTGCTTTGGAAGCTGTTACTTTTGGTTCTTTCCTCTGGGATGTAGAGAGTTATGTGGATTCGAGGTATCACTTTGTTCTCAATTAAATAATGTTCACGTGCATGCAGGCCACAAAAAAAAAAAATGTAGTAGACATACAACTGACCAAAGTTAAATGCTATCTATGTATGAGTGTAAAGCTGGTGGTAACTATAAATAGATTTGGGCTGATTTTTATGTAAAAAAAAAAAAAAAAAA | |||||||||