| mature miRNA: TTCTTGCACTCCTCCATCTCT species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208398982|gb|DC912141.1|DC912141 DC912141 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): TATCATACCCTGCAGCATTCGTTCTACCGTGGTGTGCCATCATCACATCATTTGCTCTAAGACTGTGTGCAATGGCCTCCATCGTAGCTGCATCCACTGTTGTGGCCCCTGCTGCCTTCGCTGCGGCTTCATCCGCAGTGATGACCTCCGAGGCCTCCTCCGTGAAGGCTTTCTCTGGCCTCAAGAGCGCTACCTTGTTCTCCAGCAAGGCTCAGACCTTGAGCTCAGTCCAGAATGGCAGCCGCGTGCAGTGCATGCAGGTGTGGAACCCCATCGGCATGACCAAGTTCGAGACCTTCTCGTACTTGCCCCCATTGTCCGATGACGCCATCGCCAAGCAGGTGGAGTACATGATCCAGCAGAATCTCATCCCCTGCCTCGAGTTCGATGTGAACGCCAACGGTGTGTCTCGTACCAACAACTCATCCCCTGGGTACTATGACGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGTTGCCAGGACTCCGCCCAGGTGTTGAGGGAGATCGAGGAATGCAAGAAAACCTTCCCTGGCTGCTTCGTGCGCGTGTTGGGCTTTGACAATGTGAAGCAGGTCCAGATCTGCGGTTTCTTGGTCGCCAGGCCCAACTAAACGATTTGCCGACAATTCCGTTGGAGTGCTCGTTGTAGGATATGTGTACTGCCACAATTAATAAGAAACGGTTGGGTAGCGCGATTGTGACGCAAATCATCTGATAATGCATCAAACTGTGTTATGANGANGGTCTCTTT | |||||||||
gi|208399029|gb|DC904438.1|DC904438 DC904438 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): AGGTCTTGCTCGGTGTCCCCTGTGCCCAAGCTGTTGGCTGCATTGCCCTTGCGATTCGAGTGTGGAGAGATTTTAGCAATGGCCTCCGCTGTGGCTTCAACCGTTGTGGCTCCTGTCTCTGTGACTGTGGCGTCATCATCTGTGGCCGCCTCTCGCGAGTCTTCCTCCGTCAAGGCTTTTTCTGGACTGAAGTCAGCGACCCTTTTCACTTCAAAATCCCAGCAATTGAGCTCCGTCCAGAACGGCAGCCGCGTGCAATGCATGCAAGTGTGGAACCCCATCGGGCAGCCCAAGTTCGAGACCTTCTCGTACCTGCCCCCGCTGAGCGATGACCAGATCGCGAGGCAGGTGGATTACATGATCCAGCAGAACTTGATTCCCTGCATCGAGTTCGACACGGTCGGAGCCGTGAGCCGCACCAACTTCTCGGGGTCGGGCTCGTCGGGCTACTACGACGGGCGGTACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGCACCGACTCTTCGCAGGTGCTGCGGGAGATCCAGGAGTGCAAGACGTCGTACCCTAGCTGCTGGGTCCGCGTGCTGGGCTTCGACAGCAAGAAGCANGTGCAGATCTGCGGGTTCTTGGTCGCCAGGCCCAACTAGGGAACGAATTTGTCGAGCTCTCTGGTTCTGGGTCGGGTAGCAGTANCTTTGATGGTGAGGCACTGACAGTCAGTCGCTCACACGGCAANCANCCTGGATGTGCTTC | |||||||||
gi|208394602|gb|DC928766.1|DC928766 DC928766 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): AGTAGTCTTGACTGTACCCATCTCGCTCCATCTTCCCCTCCTCGTGCATTCTCAAAGCTCAGAGCCATGGCCTCCATCATCGCTGCATCCTCCGTCGTGGCCCCTGCTGCTTTGAGCGCTGCCTCATCGGCTGTGTCGACCTCCGAGTCGACCTCCGTCAAGGCCTTCTCTGGCCTCAAGAGCACTACCTTGTTCTCCAGCAAGGCCCAGACCTTGAGCTCTGTCCAGAATGGCAGCCGTGTGCAGTGCATGCAGGTGTGGAACCCCATCGGGATGACCAAGTTCGAGACCTTCTCCTATTTGCCCCCATTGTCTGACGACGCCATCGCCAAGCAGGTGGAGTACATGATCCAGCAGAAGCTTATCCCCTGCCTCGAGTTCGATGTGAACGCCAACGGTGTGTCCCGTGCCAATAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGATGCCAGGACTCCGCCCAGGTGTTGAGGGAGATTGAGGAGTGCAAGAAGACCTTCCCCGGCTGCTTCGTGCGCGTGTTAGGCTTTGACAACGTGAAGCAGGTGCAGATCTGCGGCTTCTTGGTTGCCAGACCCAACTAAGCCATTCGTCGACACTAATCACGTAGGTGATTTTAGGGCCTTGGGATTCTCGTGTTTCCAT | |||||||||
gi|208399764|gb|DC904636.1|DC904636 DC904636 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): ACTCACAGCGTACTATCAGAGGCTTTGTGTTGTTATTGTGTCGGGACCAAACTTTAGCTATGGCTTCCACCGTCGCTGCATCCGCCGTTGTGGCACCAACTGCATTCGCCGCTGCCTCACCCGCTGCGTCTACCTCCGGGTCGACCACCGTCAAGGCTTTCTCTGGTCTCAAGAGCGCCACTGTATTCTCCGGCAAGGCCCAGAACTCGAGCTCCGTCCAGAATGGCAGCCGCGTGCAGTGCATGCAGGTGTGGAACCCCATTGGCATGACCAAGTTCGAGACTTTCTCCTACTTGCCCCCTCTATCCGACGACGCCATCGCCAAGCAGGTGGAGTACATGATTCAGCAGAAGCTCATCCCCTGCCTGGAATTCGACGTGAACGCCAACGGTGTGTCCCGCACCAACAACTCATCCCCAGGGTACTACGATGGTCGTTACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGCCAGGACTCCGCCCAGGTGTTGAGGGAGATCGAGGAGTGCAAGAAAACCTTCCCGGGCTGCTTCGTGCGCGTGTTGGGCTTCGACAACGTGAAGCAGGTGCAGATCTGCGGGTTCTTGGTTGCCAGGCCCAACTAAGTTATTCACCGAAATTTTCAATCGTANGTTCAGTTCGTCAACTGGGGTTCCGGTGAATCGTGTTGTATAATAAGCCATTGGCCTTGAAATACGAAATTGTGCTNC | |||||||||
gi|208398238|gb|DC912279.1|DC912279 DC912279 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): ACTCTGAAATCGCTCACTGCATTCCTCGCCCTTGTCGCTTCAGTCCTCGCGCTTTTCACTGTTCTAGAGCACGACAAGTCCGTAGGAATGGCGTCCGCGGTTGCTTCGTCTGTAGTGGCCCCCGTCTTTCTGGCCGCAGCCTCGCCTGCTGCCGTCTCCCGCGACTCTACCTCCGTCAAGGCCTTCTCTGGTCTGAAGTCGGCTACCTTGTTCTCTTCCCAGGCTCAGACCTTGAGCTCCGTGCAGAATGGCAGCCGTGTGCAATGCATGCAGGTGTGGAACCCGATTGGACAGCCCAAGTTCGAGACCTTCTCGTACTTGCCCCCACTGACCGATGATGAGATTGCCAAGCAGGTGGACTACATGATCCAGCAGAACCTGATTCCCTGCATCGAATTTGACACGGTTGGATCCGTGAGCCGCACCAACTTCTCTGGCGCAGGCTCCTCGGGCTATTACGACGGTCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGCACCGACTCATCCCAGGTGTTGAGGGAGATCCAGGAGTGCAAGACGCAGTTCCCCAGCTGCTGGGTCAGAGTCTTGGGATTTGACAGCAAGAAGCAGGTCCAGATCTGCGGCTTCTTGGTTTCCAGGCCCAACTAGATACTTCAGTCGAGGCCATGATATTGTGTAGACTCCGCTTGGATCCTGATACCACAGAGAGACAGCCTATTGTT | |||||||||
gi|208399454|gb|DC908451.1|DC908451 DC908451 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): GTCTGCTCTTGCGGCTCAGCCTCCTCCCTCGCTCCTCCCTCCGCACCTCATCGCTGCTGCTACAAAATTCTCCCTGCGCCGCATCATTCCCTCATCCCACAGTCAATTTGTCTTCCTGCCCTCCATCCAGCGTTTCAGTAGTACCGCGCTTGTACCCCAAGCGCTTGCAATGGCTTCCGTTGTCGCCACCTCCACCGTCGTGGCCCCCGCTGCCTTCGCAGCTTCGTCCTCGGCTGTGTCGACCTCCGAGTCGACCTCCGTGAAGGCCTTCTCCGGCCTCAAGAGTTCCACCTTGTTCTCCAGCAAGGCCCAGAGCCTGAGCTCCGTCCAGAATGGCAGCCGTGTGCAGTGCATGCAGGTGTGGAACCCCATTGGCATGACGAAGTTCGAGACCTTCTCTTACTTGCCCCCATTGTCCGATGACGCCATCGCCAAGCAGGTGGACTACATGATCCAGCAGAAGCTCATCCCTTGCCTCGAGTTCGACGTGAACGCCGACGGCGTGTCCCGCACCAACAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGTTGCCCATGTTCGGATGCCAGGACCCCGCCCAGGTATTGAGGGAGATTGAGGAGTGCAAGAAGACCTTCCCCGGATGCTTCGTGCGCGTCTTGGGCTTCGACAATGTGAAGCAGGTGCAGATCTGCGGTTTCTTGGTCGCCAGGCCCAACTAGATGATTCGTCGAGCCTACGTAACTNAGTAG | |||||||||
gi|208399109|gb|DC904518.1|DC904518 DC904518 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): AGTACCAAGCTCAGACGTGTAGCCGACGAAGCCAATAGCAGCTGGGTATGCTAGTCACTGATTCTGAAGCGGCCGGTGTGTCGATTGCGATGTATCTCAGTTCGGCGAAGGCCTGTGTCTGGAACATGGGAAGAGGGTCTTCTTGCACTCGTCAATCTCTCACAGCAACTGGGCAGGGTTGTATCCGAACGTGGAAAACGCAGCAACCGTTGTTGAACCAAAGGATGGTATTTTTCTCCGAGAAAAACGCCGTGGCTTATCTGGTGTAGACGATCCCTAATCCGGACATGACCGCCGCTGTGCAGGTGTTGGGGAACCACAATGCGCAAGAGATGCGAGAGATGGAGGAGTGCAAGAAGTACGACTGCGAAGCTACATGCTTCATCGAGCAATGAAGTCTGGGTTTTCTCCAACTTCCGCATACACACACTTTTCTCGACGACATCCGTTTCAAGCGACGTCGTAAAGATAGGGTGACAAGGAGCGTTCCAGAGCTCAGCTCGGGGCATGCCCCGGCACTCCCTAGCATATAAACATACCGGGTGGAATTTGTACCCACCAGGTCTTGCTCGGTGTCCCCTGTGCCCAAGCTGTTGGCTGCATTGCCCTCGCGATTCGAGTGTGGAGAGATTTTAGCAATGGCCTCCGCTGTGGCTTCAACCGTTGTGGCTCCTGTCTCTGTGACTGTGGCGTCATCATCTGTGGCCGCCTCTCGCGAGTCTTCCTCCGTCAAGGCTTTTTCTGGACTGAAGTCAGCGACCTTTT | |||||||||
gi|208385782|gb|DC932726.1|DC932726 DC932726 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): AAACCCATCTCCCTTTACTCGCTAGTTTTGTTTCCTCATCTGCACTGTGTTGTTGTTGTTGCCTGCAATCCTCCTGTTGCCATGGCATCTATCGTTGCCGCTACCACCGTGGTGGCACCCACTGCCTTCGCTGCTGCCTCCTCGGCTGTGTCCACCTCGGAGTCCTCCTCCGTCAAGGCCTTCTCTGGCCTCAAGAGCAACACCTTGTTCTCCAGCAAGGCCCAAACCTTGAGCTCGGTCCAGAATGGTAGCCGCGTGCAGTGCATGCAGGTGTGGAACCCCATCGGCATGACCAAGTTCGAGACCTTCTCCTACTTGCCCCCACTGTCTGATGACGCCATCGCCAAGCAGGTGGAGTACATGATCCAGCAGAAGCTCATCCCCTGCCTCGAGTTCGACGTGAACGCCAACGGTGTGTCCCGCACCAACAACTCATCCCCCGGATACTACGATGGTCGCTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCAATGACTCTGCCCAGGTGTTGAGGGAGATTGAGGAGTGCAAGAAGACCTTCCCCGGCTGCTTCGTGCGCGTGTTGGGCTTCGACAATGTCAAGCAGGTCCAGATCTGCGGTTTCTTGGTCGCCAGGCCCAACTAAGCCGTTTACTGGTCCTATCTCATGCGGTTATTANGTAGTTTTGANGTCTTGTCTCCTGTTGGTTCATGTACAATACCAGCCGTTGGCTTTTGTATATGANA | |||||||||
gi|208400481|gb|DC908708.1|DC908708 DC908708 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TTCTTGCACTCCTCCATCTCT EST sequence (targeted fragment marked with yellow): CCGGACTGAAGAGCAACACCTTGTTCGCTAGCAAGGCCCAGAGCTTGAGCTCCGTCCAGAACGGCAGCCGCGTGCAGTGCATGCAGGTGTGGAACCCCATTGGCATGACCAAGTTCGAGACCTTCTCTTACTTGCCCCCATTGAGCGACGATTCCATTGCCAAACAGGTGGAGTACATGATCCAGCAAGGGCTGATCCCTTGCCTCGAGTTCGACGTGAACGCTGACGGCGTGTCCCGCACCAACAACTCATCTCCCGGGTACTACGATGGCCGCTACTGGACTATGTGGAAGCTGCCCATGTTCGGATGCCAGGACTCTTCCCAGGTCCTGAGGGAGATTGAGGAGTGCAAGAAGACCTTTCCCGGATGCTTCGTACGTATCTTGGGTTTCGACAACGTGAAGCAGGTTCAGATCTGCGGTTTTTTGGTCGCCAGGCCCAACTAGAGAATTTGTTGAGCTCCTGACTCTAAAGGTCATTAGGTAGTTTCGAGGTTTGAAACCCTTGCTGTTGATGTACTCTACTTTCTGCTGGCTTGAACACGAAACTGAATTTCAAAACTCAGTTTGCACGAAAAAAAAAA | |||||||||