| mature miRNA: TTGAACCGGTTTCGGTTCGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73896255|gb|DT498993.1|DT498993 WS0116.BR_P03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_P03 5', mRNA sequence TTGAACCGGTTTCGGTTCGG EST sequence (targeted fragment marked with yellow): ATGTTCGTAGTATCATAGCTTCTGTTCAGCGGGTAGCATTAGCGCTCTCCCCTTCTCATTTTGGTTCTCATGCTGGTTTTTGGCCACCACATGGAACCCCTGAAGCGCACACACTTGCTCGTTGGATATGCGAAAGCTACAGGATCTATCTAGGTGTGAAACTGCTTAAAAATGAAGGAAGTGATTCTATTCTTAAAACACTCTGGCATCACTCTGATGCACTAGTGTGCTGCTCTTTGAAGACTCTGCCGGTTTTCACATTTTCAAATCAGGCTGGACTTGACATGCTTGAGACAACTTTGGTTGCTCTTCAAGACATCACTTTGGAAAAGATATTTGATGATAATGGAAGGAAAACATTGTGCTCAGAGTTCCCACAAATAATGCAGCAGGGTTTTATGTGCCTTCCAGGTGGTATCTGCCTGTCAAGTATGGGAAGGCCAGTCTCCTATGAGAGAGCAGTGGCATGGAAGGTATTGAACGAAGAAGAAAGCGCTCACTGCATTTGCTTCATGTTCATGAACTGGTCTTTTGTGTGACACTTTGGAGAAAACATAAATCCTGAAAGTAAACAGATTAGAACAAACTGAAACTGGTTCAGAAGCTTTGAAGTGCTTTGATACTGTAATGAGCATGATGCAGCAATG | |||||||||
gi|73886570|gb|DT489308.1|DT489308 WS02538.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N21 3', mRNA sequence TTGAACCGGTTTCGGTTCGG EST sequence (targeted fragment marked with yellow): ATTGAAATAAATTATGCATATACTGCATTCACCACCATTGTTAATGTGCTAGCATTTTTTTAAATGCAAAGACAAACATGCTTTAATAAGAAAATTCAATGCAACCTCAAATAAATTTTTTTTATCGTCACCCAATTTTTGTACAATATAAAAAAAGTCCCTTTAATTTATTTTCTCTTTACCGTATGAAAAAAAGTTACATAAGAGAAAAGAAAAAAAATTCAAGAGGAAAAAAAATAATAATTTGAAGTAAAGAAAAAAAAAATTTAAATTTTTTGAAAGCATTTTTGAAACGCAAAAATAAACATGCTTTAATAAGAAAGTTCAACCCAACCTCAAATGTAAAAAATTATCATCACCTAATTTTTGTAGAATATTAAAAAAACTCCCATCAATTTATTTCCTCTTTACTAGGGGTGAGCAAAAAAACCGAAAAACCGATTAAACCGAGAAAACCGGAAAACAAATAACCGAAAAAAAAAACCGATTAAAATTTTGAAAAAATCGGCCGGTTCGGTTTCGGTTTTATAAGCAAAAAAACCAAAAAAACCGAACCAAACCGAAACAAAACAAAACCAGAAAAAAAACCGAGCCAAACCAGAAAAACCAAGCCAAACCGAAAAAACCGAGCCAAACCGGTTTGAACCGGTTTCGGTTTTTTTTTTCAAAAAAAAATTTCGGTTTGGTTACTTTTTTTGATAAAAACCGAACCGAACCGAAAATGATCACCCCTACTCTTTACCATATGAAAAAAAAAATTCAATAAGAGAAAATAAATTAAAATTGATTTTTTTATATCATCACATCAAAATAATACAAAAACATTAAAAATATTAATTTGAATTAAAAAAAAAAAAAAAAAA | |||||||||