| mature miRNA: TTGAAGAACAGTGGAGACAT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73886843|gb|DT489581.1|DT489581 WS02542.B21_J23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_J23 3', mRNA sequence TTGAAGAACAGTGGAGACAT EST sequence (targeted fragment marked with yellow): GTTCTTTTTGACCATCTTGATGCCCATACGCAAGAAATGAAATCTCAAGCCCCACCTCCCAAGATTGCCCGTCTTTCGAACTCTAGGACTGGACTGCTAAACGGTTGGAACATGGAGGGAAATAGGCGCAATGGTCGGTCTCGGTCACCTTCAATTGGGCTAGGAGTTGAGCTTGGACGTGGTGGTTCTAGTCAAAGACCAATAACTGGCTGCAAAAAACCTTATGGGTTCACTATTCTTCAACTGCATGAGCTAGAACTTCAGTCTCTTATCTACAAGTATATCCAAGCTGGATTTCCTGTACCTTACCATCTTGTTTTACCTATATGGAAAAGTGTTACTGCTTCCCTTGGTGGTCTCAGTTCAAGCTTGTACCAGCTCTACCCTAGCTTTATGGGGTGTAAGTGTAACCCATTATATTTGGAATATAAGAAAGGAATGGAACATGAGCCAGGGAGATGTAGGAGAACGGATGGAAAGAAGTGGAGGTGTAGCAAAGAGGTTCTTCCAGATCAAAAGTACTGTGACAGGCACATACACAGAGGACGCCAGCGTTCAAGAAAGCTTGTGGAAGCTGCTTCTCATAGTAATGCCAGCACCAACCTCTCCATTTCTCTCCCTGGAATCGGTAGTGCTAGCGCCTAGCAGTACTAATCTCTCTCCAATATGTTGTCTCTCTCCAAAGAATGTTCTACACAAGAAATATGTAATAGGAGCAGCTGCTAAAAAAGTTGTTTACGGATTTCGAGAGTCGGTTTAAGCTAATTTTCAAACAGAAGAATCAAGCATGTACTACGTCCTATGTAGTTTTACCCTTTTTTTCTTGTCTAACGTAATTGAGTAAGGTTTAAATTGGGACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24059338|gb|BU868691.1|BU868691 M120A03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TTGAAGAACAGTGGAGACAT EST sequence (targeted fragment marked with yellow): ATTTTAATCCTCTACGAGCCCTTTACCTCCCTCTCTCTCTGTCACACCATGACTAAGCAACAAGCAAGATTTGAACCCTACGATTTTAATGGAGGGACTTGTGTTGCGATTGCTGGAGCTGATTACTGTGTTGTCGCTGCTGATACTCGAATGTCTACCGGATACAATATCCTCACTCGCGATTACTCCAAAATCTGTAAACTAGCAGACAAATGTTTGATGGCCTCTTCAGGGTTTCAAGCTGATGTCAAAGCCCTACAAAAGATGTTGGGTGCCAAGCACCTGATCTATCAACATCAACACAACAAGCAGATGAGCTGCCCTGCCATGGCTCGACTGTTCTCCAACACTCTCTACTACAAACGTTTCTTCCCTTATTATACCTTCAATGTTTTGGTTGGCTTTGACGAGGAAGGAAAGGGCTGTGTTTACACTTATGATGCTGTTGGCTCCTATGAGAACGTTGGGTATACCGCCCAAGGTTCTGGCGCTAAACTCATCATGCCTGTGCTGGATAACCAATTGAAGTCCCCCCACCCGCTTTTATTA | |||||||||
gi|52395598|gb|CV236225.1|CV236225 WS01223.B21_F08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_F08 3', mRNA sequence TTGAAGAACAGTGGAGACAT EST sequence (targeted fragment marked with yellow): GGTCAAAGGAAAGAGAAATTCACCATTCCTTCCCAATGACACTTTTTGTGCCTCGCACAGCACGGCTAGACCACCGTAAATTTAGTGCTCCTCAAACACTGGACATGGCAATTTGTCATCATTCGCCCAATATGTTCCATCTTGATGATAACACTGCAAATGCTTGGGATTTACCCTAGTTGGTTGAGTTGGACATTCACCATTATCCTTAACATTTCGGTTTCAGTGGCTCTGTATTCTCTGGTGTTGTTTTACCATGTGTTTGCAAAAGAATTGGCACCACACAAGCCTCTTGCAAAGTTCCTATGCATCAAGGGGGTTGTCTTCTTTTGCTTTTGGCAGGGCATAGTGCTTGATATGCTTGTTTCGGCAGGCATCATTCGGTCTCATCATTTTTGGTTGGATGTGGAGCACATTGAAGAAGCTTTTCAGAATGTCTTGGTAATTTTGGAGATGGTTGTCTTCTCTGTTCTCCAACAGTATGCATACCATGTTGCACCTTATAGTGGAGAAGTGGAAACAAAAATGCTGAAAAAAAGAGAGTGATTTGTCCAGAATTCTAGACCATGGAGGGGACATGGCACAACACATGCTAGGAAATGCATTTCCATAGGTCTGCTCTATACTTTTATGTAATATGAGGTGTCTACCTATGTTAATGCGCCCTCCACCCACTTTTCCTCTTTAGCTTCTTTGGTTAGATGGCCATGCTGAAGAAGATATAATAAATGTTGCTGTATTGTCTATTCTATACAATTTTGTTGATGATTACCAGAAACTTCAATGCAAAAAACTTGGCAGACAAAAAAAAAAAAAAAA | |||||||||
gi|73890728|gb|DT493466.1|DT493466 WS0111.BR_H08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_H08 5', mRNA sequence TTGAAGAACAGTGGAGACAT EST sequence (targeted fragment marked with yellow): GACTCCCTTCTATAAAAAAGGTAAAAAACACCTATCTCTTCACTCTTCTTCACTCTCAAACTCAACAAACAAACATACTGTCTCTCCCTCTCTCTCTAAGGGGTGCTCTGAGAACAATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCACCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACCTTTCTGGTCTTAAGCCAGGCCTTCATGGCTTCCACGTCCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGGCAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGACAAACAGATTCCTCTTACTGGACCACATTCCATTATTGGAAGGGCTGTTGTTGTTCATGGAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTCAGCAAAACCACTGGTAATGCTGGTGGCAGAGTAGCATGCGGTATTATTGGTCTGCAAGGTTGAACTGCTTCACTCTG | |||||||||
gi|52493693|gb|CV240718.1|CV240718 WS02510.B21_C09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_C09 3', mRNA sequence TTGAAGAACAGTGGAGACAT EST sequence (targeted fragment marked with yellow): CATTCAGGTGAAGTTTCCTTACCTGGGGGAAAAGCAGATGAGAGTGATAAGGATGATTTGAGACGGCAACAAGGGAAGCGAAGGAGGAAATTGGGTTAGATCCCTCACTTGTGAATGTTGTTACTGTTCTTGAACCATTTTTGTCTAAGCATCTTCTGAGAGTGATTCCTGTTATAGGCATTCTAACCAATAAGAAGGCTTTCAAGCCCACCCCAAATCCCGCTGAAGTGGAAGCAGTATTTGATGCTCCCTTGGAAATGTTCATTAAGGATGAAAATCGACGAGTAGAGGAGAGAGAGTGGATGGGAGAAAAGTATCTGATTCATTTCTTTGACTATGAAACGGGGAATAAAAAGTACTTGATATGGGGTTTAACTGCTGGGATTTTGATCAAAGCTGCTTCAGTGGTCTACCAACGGCCACCAGCTTTTGTGGAGCAGAATCCAAAGTTCAAGTTTCCTAAAGGTGCAAGCAATGATACAGTGACGCGCTGAATAATTCAGGAAAAATATTGTTGGATTGTACTCAGATTCTCGGAATAATCATCCTTCCTCAATAAAAACCCTCACAACCCACACGTGTTGAACCAGTTAAGTTATCAAATGTATGCACTAAATAGCATTGTCAGTAGATAGGCAGAATGCAATATTATCCTTTAGGAAATTGTAAATTGAGGAGACTGATTACTTAAGAGGCAAGGAGTTAACTGGATCAAATTTCAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|52497623|gb|CV244648.1|CV244648 WS0255.B21_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_D19 3', mRNA sequence TTGAAGAACAGTGGAGACAT EST sequence (targeted fragment marked with yellow): GTGAATTTCCAGGGGAGTGAAGCATTCTTCACGTTTTTGGATTCAGTTAAGGAATGTTACGAGGCCTTGGTAATTGCCAAGTTCTTGTCATTGTTGTATAGTTACCTGAAAATATCCATTAGCAAAAATATTGTGCCTGATGAGGTCAAAGGAAGAGAAATTCACCATGCCTTCCCAATGACACTTTTTGTGCCTCACACAGTGCGGCTAGACCACCGTAATTTAGTAGTGCTCAAACACTGGACATGGCAATTTGTCATCATTCGCCCAACATGTTCGATCTTGATGATAACTCTGCAAATGCTTGGCATTTACCCCAATTGGTTGAGTTGGACATTCACCATTATCCTCAACATTTCCGTTTCACTGGCTTTGTATTCTCTGCTAGTGTTTTACCATGTTTTCGCAAAAGAGTTGGCACCACACAAGCCTCTTGCAAAGTTCTTATGCATCAAAGGGGTTGTCTTCTTTTGCTTTTGGCAGGGAATAGTGCTTGAGATGCTTGTTTCGATGGGCATCATTCGGCCTAATCATTTTTGGTTGGATGTGGAGCACCTTGAAGAAGCTTATCAGAATGTCTTGGTAATTTTGGAGATGGTTGTCTTCTCTGTTCTCCAACGGTATGCATACCATGTTGCACCTTATAGTGGAGAAGTTGATACAAAGATGCTTAAGAAAAGAGAATGATATGACCGGAATTCTAGACCATGGAGGGGACATGGCACTACACATGCTAGGAAATGCACTTCCATAGGTCTGCTCTATACTTTTATGGAGTATGAGGTGTCTACCTTTGTTAATTCTATTGTGCTCTTTTTTCTCCCTTTTCTCTCATGGCAATGTTGCTGTGTTGTCTATTATGGACAAATTTGCTCATTATCAGAAATAAAGTATTCTTCTGCCCAAAAAAAAAAAAAAAAAA | |||||||||