| mature miRNA: TTGAATAAGACGAATGATCAA species: Cynodon dactylon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209853497|gb|ES300055.1|ES300055 _23Y_D09 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): GAGGTAGGACTGGGAGGATGAGTCCACATCCCACGAATCCGAGAAACCTGCTGCTGCGTCTTAAGGAGTCATGTATTATACTCCCTTCATTCCAAAATTGTTGTCGTTATTGACTTTCTTCGGAAAGTTTGACCACTCGTCTTATTCCAAATATTTGTTCAAATATACAAAGTTACATGTTATATTTTAAGTTTCTATTGTAATAAAATAAACTATAACAAAATATCATATATTTTGTAAATTTTTTTGAATAGGAAACACAAAAGACAAAGAAAAACATCTAAAAAAAAATATCCAAAAAGATAACCTTGAAGAAAAAAAAACAAGCTCAGCAAAAAAAAAAAATACTTCCTTTGAAATTGTTGGCGGCCCCCCTCGCCCATCTG | |||||||||
gi|209848091|gb|ES302873.1|ES302873 _38Z_H12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): TGAGACTGAGGAACCGATCCTAGTACTAAATGAAGTAACAATTGACCGTGGAATGTCATCTTACCTTACCTATCTAGAATGCTATTGTGACAGTTCTTTTGTAACATGCGTACAAGGAGATGGGCTAATAATATCAACAACATCTGGAAGCACAGCATATTCATTGGCAGCTGGAGGATCAATGGTTCACCCGCAGGTCCCAGGGATCCTTTTCACCCCAATATGCCCCCATTCACTGTCATTCAGGCCTTTGATACTACCGGAATATGTAACTTTGCGCGTACAAGTACCATTCAACAGCAGAGGGCAAGCTTGGGCATCCTTTGATGGCAAGGGCAGGATTCAACTAGGGCCAGGTGATGCGCTCATCTGCAGTATTTCCCCATGGCCTCTACCCACGGCTTGCCTTGCGGACTCCACAACTGACTTCTTGCGAAGCATCCATGAGGGTCTCCATTGGAATTTAAGGAAGAGTCAATCCTTTGATGGCCCGCCTGCATGATCGGTTTTAAGTTTGTACAACAGTCTGGTGGTAGTGACACGATTTGATATGGATGACAGAATGGTAGATGTGATATCTCAAAGCATCTCCTCACAGCTCGAGGGTTTGGTCCTTGCGCGCTTCCCATGTACAAGTTTGTTACCTATGGTTCAGGTAGTAGAAACATGATCACTACACATGCATGTATAGTTGTATGCAGTGAGATGGTACATACTCCCTCCGTTCTGAAATTGATTTTGCCGTTGACTTTTTTCGTCAAGTTTGATCATTCGTCTTATTCAAAAAATTTAATAATTTATCACATATTTTGTTATGATTTGTTTTATCACTTATGAAACTTAAAATGTAACTTATAATTTTACATATTTGAGCAAATATTTTGAATAAGACAAATGGTCAAACGTAACGAAAAAAGTCAACGGCGACATCAATTTCAAAAAC | |||||||||
gi|209853914|gb|ES298921.1|ES298921 _38X_E11 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): CCGGGGGTGCTGCAGATAGAGTGTTGAACCAGCTTCTGACTGAGATGGATGGCATGAATGCAAAGAAGACTGTTTTCATTATCGGTGCCACTAACAGGCCGGATATCATTGACCCTGCCTTGCTTAGGCCAGGGCGACTCGATCAGCTTATCTACATTCCTCTGCCTGATGATCAATCTAGGCTCCAGATCTTCAAAGCCTGTCTCAGGAAGTCTCCTGTTGCTAAGGATGTTGACTTGAACGCTCTTGCTAAGTACACCCAGGGTTTCAGCGGTGCAGACATCACAGAAATCTGCCAGCGTGCGTGCTAGTATGCCATCAGGGAGAACATCGAAAAGGACATTGAGAGGGAGAGGCGTAGAAAGGACAACCCTGAGGCCATGGAGGAAGATGAGGTGGACGAAATTGCTGAGATCAAGGCTACACACTTCGAGGAGTCGATGAAGTTTGCGCGCCGAAGTGTGAGCGATGCCGACATCCGCAAGTACCAGGCCTTCGCCCAGACGCTGCAACAGTCTCGTGGGTTCGGCAGCGAGTTCAGGTTCCCTGGCCAGCCAGCGACGATGGGGGCTGGCTCCGGCGCTGCGGCTGACCCCTTTGCATCCGCGGCTGCCGCTGACGAGGATGACTTGTATAATTAAAGTAGCGCTGCTGTAGCTAAACTTGACCAGTTAATATTATGTTACTCCCTCCGTTTTTAAATTGTTGACGTCGTTGACTTTTTTTTTGTTACGTTTGACCATTCGTCTTATTCAAATTTTTTTAAAAAATTATCAAATATTTTATCATAATTTATTTATTACCAAAGAAAATTGAAACATAACTTATAATTTTACATATTTAAAAAAATATTTGGAATAAGTTGAGCGGTCAAATATAACGAAAAAGTTAATGGCGTCAACAACTTAAGAACAGAGGG | |||||||||
gi|209853403|gb|ES300047.1|ES300047 _23Y_C09 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): TTGTACTCCGGTGGGCATGTCCTGCCAAGGCTGTGTTGGAGCTGTTAAGCGGGTTCTGGGCCAAATGGAAGGTGTTGAATCCTTCCATGTTGACATAAAGGAGCAGAAGGTAACGGTCCAGGGCAATGTAACACCTGATGCCGTTTTGCAAACTGTTTCCAAGACCGGGAAAAAGACTTCCTTCTGGGAGGCTGAGTCCACATCCCACGAATCCGAGAAACCTGCTGCTGCGTCTTAAGGAGTCCTGTATTATACTCCCTTCATTCCAAAATTGTTGTCCTTATTGACTTTCTTCGGAAAGTTTGACCACTCGTCTTATTCAAAATATTTGTTCAAATATACAAAGTTACATGTTATATTTTAAGTTTCTATTGTAATAAAATAAACTATAACAAAATATCATATATTTTGTAAATTTTTTTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTGGGGGCCCCCCCCGCCCC | |||||||||
gi|209848442|gb|ES301455.1|ES301455 _14Z_F10 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): GAACGAGCAGACAAAAAATGTCCGCCTCCGCTGCGGCTGCCTCCCCTGGCCTCCGCTTCTCCTCTACCACTCCCCGGCTAACTCCTCTCCACCGGCCGCTCCGCCGCCGGCTCCCGTCAGTCCAGTGCTCCCTCGCCGCTGCCCCTGGTGTCCGGGCGCCGCCGGACCTCGTGGAATCCATTCTCTCCAAGGTTAAAGGGACTGACCGGGGAGTGCTGCTGCCTGAAGATGGGCATCAGGAAGTGGCAGACGTCGCGCTGCAGCTGGGGAAGTACTGCATCGACGAGCCCGTGAAATCCCCGCTCATATTTGGAGAATGGGAGGTTGTGTATTGCTCGGTTCCGACGTCCCCAGGAGGACTTTACCGGACGCCTCTCGGACGCCTGATATTCAAGACAGATGAAATGGTTCAGGTGGTGGAAGCCCCTGACGTTGTTAGGAACAAGGTGTCATTCTCTGTCTTTGGTCTCGAGGGTGCAGTATCTCTGAAAGGTAAGCTGAATGTACTGGATAGTAAGTGGATTCAGGTCATATTTGAAGCCCCAGAATTGAAGCTAGGCTCCCTGGGGTTTCAATACGGTGGTCAGAGTGAGGTGAAGCTGGAGATCACCTATGTCGATGAGAAGATCAGGCTAGGAAAAGGGTCTAGAGGCTCGCTTTTCGTCTTCCTTAGACGAGACTAGAAGGGCATGCGTGCGCCATTGCATGTGCTCAGCGAACGCAAGGGAGGGGCACTGATACGGTGGTTTGTACAATAGTGTATTCAGGATTTCCTCGCGTGTAAAACTCAGAAGACAGTTTGGGCGGTTTTCTCACTGTTTTTAAATTGTTATCGCTGTTTACCCTGACGATTCGTCTTATTCAAAATATTCATTCAAATATGCAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|209857355|gb|ES292116.1|ES292116 _01Z_E03 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): GCCGGGGGGAGAGAAGGACAGTGAAGATGGTGTGCTTGTGAGCACATAGTTACCTAGTATATATATCTGCCTGAATAAAAGGGTTGCTCTGGTACCTGGGAGTTTGCTTATGCGACCTTTGCTATATTTGCCGCGTTGTGATGTGTCTGTCGTACTGTAGTGTTGGCCTGCCGGCCTCAATGGAGCAGCAACCTCAGCTTGGTACTGGCGGTAGCTGCTACTACCTTTTATCCGTTACTCAGTATGCAAACTTATATAATGATCTGATCCGTGTGTGCAGTATTCGGAGTTTGTCTGATTTGTTTTCTGTACCTTGTTTTGTTGTTTTGGTGTGACTGCTGTGTGATCTGGTTTAGCTGATGACTATTCGTTTTATTTAAAATGTTTATCTAAATATGTAAAATTTTAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|209857149|gb|ES307086.1|ES307086 -56-B16 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): GGGGTCCTCGCATTCGTTCCGTCGGATCGATTCCGCACAAGACCTCCCAATCCCTTGCCGTCTGAATCCGGAGTCTGGAGATCATTCCAGCTGCACCCCCGCGCCATGACCCAGACTGTTGTACTCAGGGTGGGCATGTCCTGCGAAGGCTGTGTTGGAGCTGTTAAGCGGGTTCTGGGCAAAATGGAAGGTGTTGAATCTTTCGATGTTGACATAAAGGAGCAGAAGGTAACGGTCAAGGGTAATGTAACACCTGATGCCGTTTTGCAAACTGTTTCGAAGACGGGGAAAAAGACTTCGTTTTGGGAGGCTGAGTCCACATCCAACGAATCCGAGAAACCTGCTGCTGCGTCTTAAGGAGTCATGTATTATACTCCCTTCATTCCAAAATTGTTGTCGTTATTGACTTTCTTCGGAAAGTTTGACCACTCGTCTTATTCAAAATATTTATTCAAATATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|209850805|gb|ES306218.1|ES306218 -53-F02 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence TTGAATAAGACGAATGATCAA EST sequence (targeted fragment marked with yellow): GGGGATTTCATCGGGTTCCTTTGCCTCTGTGCCTTCTCCAATGCCAAGCATATCAAAGTCGGCTTTCAAGATGGAAAGCCGTGTCCCTGCCGCTTGTCCAAGGTGGAGAAGAAGTCCATCCAGTACACGCCACCGCCGGTACTTCTACATCAAACTTTCGGCCTGAGAGGTTTCCCTCTGCAGCTTCCTTCCTACCCTGGTACCGACAACTACATCGGCCAGGAACTCGCCGGAAACACCATCGCTGGCAGCTGCTCGGAATCGACCTAACATGTGAGTTCGAGTACAGTCACCTTCAGTGTCTGGCTGTGCATGTCTTGCCATCTAAAGGTGTCATTCTGCCTTTAATCAGCGTCCGGGTGAACAACATACACATCAAGCTTCACGGACGATTTTCCATCAAGCAGGCAGTAAGACCCTTGACCAAACCTACTCTAATGCAGCGAGGCCCTTCGGCAGAACTTTGTCAGTCTGCCTGTCTACGGCTTGTCTTAGTATGTGTTACTCCCTCCGTCCGAAAATATAAGCATTTATTGATTTTTAGATATCATTTTTGATCCTTCGTCTTATTTAAAAAATTTGTAAAATATAAAATTAAATAAGTCATATTTAAAGTATATCTAATGATAAAGTTGACTATAATAAAATTAATAATAATTTTATAACTATTTTGAATAAGACGAATGATCAAACATAAAATTCAAAAGTCAACAAATACTTATATTTCTGGACAAAGGGAGTACTCTGCTCGTTGGGAGCGTTCATGTATGCACCTGCTC | |||||||||