| mature miRNA: TTGACAGAAGAGAGAGAGCAC species: Capsicum annuum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22781974|gb|BM061856.1|BM061856 KS01035E08 KS01 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAGAAATCAAAAGCTTTTCTCTTTCCTCTCTTTCTTCTCTCAAACGAATTAGGGTTTGAGTAGATTGTTTCTTTCGATTTTCGATCATCTTCTACTCTAACATGGTATCAGCGCCAGGTTTCTGGTAGATCTATGGCGGGGCTTTCAATCGATATTACCCTCGTGTGGAGTCTTTCGATTTGTGGAAGCTGATTCGGCTCGTGTGGAGCTTTTCGAGTTTTTGTGGGAGCTTTTCGAGCTTTTCCAAGTTTTCGTGGCTGATTTGGTTTTGGAGTAGCCTCATGTGGAGTTTTCGCATACTGTGGAAGCTGAGCTGGTTTTGACGCTGTTTTCAGTTGCACAAGACCTCGCCTTCTTCAGGTTTAAGAAGAAGGCCGGTAAAATCCTTCCGTATAAACTCTACTTTATTCGATCGAGTGATTTTTGGTTGTCTGACTGTTCAGAATTATTCGATCTGAGATTTGGTGTTCAAATATTCCGTGTAATTGCTTAAACTGTTTTAGTATGACGACTACTCAACGAGAGAACAATAATGCTACTTCGACCACTCGTAATACGAATGGTTTCGATGAATTTACCCTCGATGCATCACA | |||||||||
gi|224645765|gb|GD068308.1|GD068308 KS15052F10 KS15 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGTTCTTTTGTTCTCACTATCTTCTGTCAATGTTGTTGTTGCTGGAGATGGAGAAAGTTCTGGTGAATCTGGGAACCCATTTACACCAAAGGGTTATCTGATTAGGTACTGGAAGCAACATGTGTCAAATGACTTACCAAAGCCATGGTTCTTTCTCAACAAGGCATCCCCATTGAGTGCTGCACAATATGCAAAATATTCAAAGCTTGTTGCTGATCAAAAGGCACTCACCACACAGCTTCACTCCTTTTGCTCTTCAGCAAATCTCATGTGTGCACCTGATTTGTTACCAAATCTTGAAAAGCACAAGGGAGATGTCCATTTTACCACTTATGGTGACAAGAACTTTACCAATTACAACACTAAAGTATATGGTCTCGGATTTAACTCATTCAAGAACTATTCCGAGGATTTTACTGGAGGTATAAATTCTTTCAGGCGTTATGGTAGAGATTCTCCCCGTGACAATCAATTTGACAACTATGCTCCTGATGGCAATGTAGTTGATCAAAGTTTCAACAGCTATAGCACAAATACTCCAGGGGGTTCTGGCCAATTCACAAATTATGGGCCAGATACCAATGTCCCCTCTCTAAAGTTCAATTCCTATTCGGACAATGGTGCAGGCTCGGACCAAAATTTCACAAGTTATGGC | |||||||||
gi|22785044|gb|BM064926.1|BM064926 KS01072H11 KS01 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGGGGAAATTTCTGTAGGGCAAAACTCCTCTTGTGCTCCCTCTCTTCTGTCAACAGGCATTTCATCAACTCTGCCTTGGATGGTTCAAGGAAACCATAATGCCTACATTAAAGGTGATCATCTTAATCTTGTGAAATCTGCCAGAGTTGGTGTTACAAGTAGTTCAACACCAATCGAGTTATATTCATCTGAAGTAGTTGAGCAAGACGGGGTCGTTGTTCAAGTTCCTGGTAGTGAGGCTGTTTCATTTGGAATTCAGAGAGATCACGGACATGGTCAAAGATCGAGCGCTATAATTTCCAAGAATTGCCTTTCTCCAGAAGGTGGACCTACCATGGATTTAGTGCAGTTGTCTTCGCACCTACAAAGGGTGGAGCAGCAGAAAAATTCTGTCCAAGTGAAGCAGGAAAATGATATCTTTTGTGCTTTTACTTCCACTTGATACAAGTCTGAAGGGTCAACATCCAAATG | |||||||||
gi|224642296|gb|GD061550.1|GD061550 KS14045A07 KS14 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGTCGTAAACGTCTTGATGGACATAACAGACGTCGAAGGAAGCCTCAGCCAGATTCTATGGCCAAAAATTCTGGATTACTGAATGGCCAACAAGGAACGAAGCTCCTGTCATTTAGCAGTCAACAGATATTTCCAAGCGCAGTTGTGAGCTCTACATGGGCTGGTGTTGTCAAAACGGACAGCGATATGGTGTTATACAACAACAAATCACATATAAATTGCATGGACAGTCAAAACTCATTCGCTCATTCTTCGGCTCATAGCTATAAAGGAGGAAGCCAACTCCAGTTCTTGCAAGGCATTGGTCGTAGTCTCCCTGAAGCTTCTTCAATCTGCCCGCCACTTCTTGATCATCCCACTTCTGCAGCAGGAATTTCTAGCAGCGGACAAAAGATCTTCTGCAGTGGATTAAGTGAAGTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCGGCACCCGCTGTAACTAGGGAGATTGGTCTGAGTAACATGGTGCAGCAGCCTGCCTCTATCCCCTGTCCCCGGTCACATGGCCTGCACTATGGTGGTCTAAGCCATTTCCCATTTGCTCAAGATTTCAATAGCAATCCTCAAGATTCACATGTTAGCAACAGCAGCAGTCCTCTCCATTTCCATGAAATGTTACAAAATGCACAAGATGGGTCATCTACAAGTGATGG | |||||||||
gi|25039682|gb|CA525602.1|CA525602 KS12058F05 KS12 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCTATCTGGTGGAGGGTCATCACATCCTTCTTGTCAGGTCGAGCAGTGCACTGCAGATATGGCAAATGCCAAGCCATACCATCGCCGCCACAAGGTGTGCGAGTTCCATTCAAAGTCTTCAATAGTACTTATTAGTGGACTCCAGCAGCGATTCTGTCAGCAATGTAGCAGATTTCATCTGTTAGCAGAGTTTGATGAAGCTAAAAGGAGTTGCAGAAGGCGTTTGGCAGGTCACAATGAGCGCCGCCGTAAAATTTCATACGACTCCCAAGGAGAAAGTTTGAACTGAAGCAGCATCAGCATCACTGGCATGGAAATCACCTACTTTCTGAAGCAAATTACACAAAGCGATGTGGTTTAAGCATGCTCTCTATCTTCTGTCAATTTCCGGATTTCTAAGCCAAATTGTTATTTGTGACCTTCAATTTCTGGAATCCTAGCTAATAGAACTTCCATTTCCTTATGTAAGGGAAGGACCAAACGAATAAGCCGCTGGCACTGCCTGCTAGTATTTGAAAAAT | |||||||||
gi|224694517|gb|GD103289.1|GD103289 KS21046D07 KS21 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCAAAAGCTTTTCTCTTTCCTCTCTTTCTTCTCTCAAACGAATTAGGGTTTGAGTAGATTGTTTCTTTCGATTTTCGATCATCTTCTACTCTAACATGGTATCAGCGCCAGGTTTCTGGTAGATCTATGGCGGGGCTTTCAATCGATATTACCCTCGTGTGGAGTCTTTCGATTTGTGGAAGCTGATTCGGCTCGTGTGGAGCTTTTCGAGTTTTTGTGGGAGCTTTTCGAGCTTTTCCAAGTTTTCGTGGCTGATTTGGTTTTGGAGTAGCCTCATGTGGAGTTTTCGCATACTGTGGAAGCTGAGCTGGTTTTGACGCTGTTTTCAGTTGCACAAGACCTCGCCTTCTTCAGGTTTAAGAAGAAGGCCGGTAAAATCCTTCCTTTTTACAGGCTCCCCAGGTCCCTCATCTTCTGGCTGGCATTCATGTGTTGCGCTATTTCTTAATGCCCCTGATCTTGGGCTTCTTTTCAATAGAAACTCTGATCTCAGCTTACTGGCTTACTCAGATTCTGACTGGGCTGCTTGTACTATTTCTAGACGTTCAGTGACTGGTTTTTTTCACTTTGGGTGGCTCTCCTATTTCTTGGAAGTGCAAGAAGCAACCTACTGTGTCTTTATCATCAG | |||||||||
gi|25016881|gb|CA516324.1|CA516324 KS09056D11 KS09 Capsicum annuum cDNA, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCTCGAGGGTCGCAGGAGGCTCTCCGATCACAATGCACGGCGCCGCAAACCTCAGCAAGAAACTATCCAGTTCAATTCAGCGAGGCTTTCTTCATTGTTTTATGGTAACAGCCAACCTATGAATTTCATACTCAACCACGCACAACTCATTCACTCCAGAGCTGCTGCAAACTCTACCTGGGAGAGGACTCAAGACTCTAAATTCAGTATAACAAGAGGGTTTACTCCAAAGGCTGAAAGAACTGGCAGCACAAATGGGAAGTCGCTACTGGAGGGGATTCAGTTTTCAGGGGGTGTGGGTGCACAGAGTAATGCATCTAGCTTGTTCTTGCCCTCCAAGGGCACCACAGCCGAGGTTTCCCATCAAGGTGCCAAGGAATCCACGTTCAATATGGTTATAGGACCGGAATTTCCTCGTGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCATCTGAGCCTGAGACTGTTTCACTGCGCCCTGCAAATCAGACCAGCATGCCCGAG | |||||||||