| mature miRNA: TTGACAGAAGAGAGAGAGCAC species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211618987|gb|GE496435.1|GE496435 CCFS7486.b1_L23.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS7486, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGTCGGAGGAGCCAAAGGAACGGACAATTTCCATTTTTATCCTTCTTTTTTAGAAAGAGAGAGAGAGAGAGAAAGTGGATGCGAACGAACAGAGATTAAAACCTAATCAAGCGATTCCGGTATTGATTCTGACGATGATAACGATTATTACTATTATGCATCTGAAAACGCTACATTCTTCATAATTCATCATCATCTGACGGGTTGCCATCTCGAAGAATAATAGGCGCCAAACGGCGATCCTGAATTTCTAGATCGATAATTTGTTCCTTCACCGGTTAATTAACGAAAGCGATTAAGAAGAAGAAGCAATGGCCGGTGCTGGTGCAGATGTTACGGCGGCTCCGGCAGGGCCGCCTCCGCCGCTCGATTGGAAATTCTCGCAGGTGTTCGGTGAACGGACCGCCGGTGAAGAAGTTCAGGAAGTTGATATAATTTCGGCTATTGAATTTGATAAAAGCGGTGACCATCTTGCTACTGGTGATCGTGGGGGAAGAGTGGTATTATTCGAGAGGACTGATACAAAGGAGCATGGTCATGGTAGAAGTAGAAAAGATTTAGAGAAAACCGATTACCAGAGTAATAGGCATCCAGAATTCCGTTACAAAACTGAGTTCCAGAGCCATGAACCTGAGTTTGATTATTTGAAGAGTTTGGAGATTGAGGAGAAAATTAACAAAATTAGATGGTGCCAAACAGCCAATGGTGCCCTTTTTCTTCTGTCTACAATGACAAAACAATCAATTCTGGAAG | |||||||||
gi|211634211|gb|GE504230.1|GE504230 CCFT420.g1_G09.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT420, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTCACAATGGACAGCCTCAAATCACAACTATTACACATTCTACTTGCAACTTGCAAGTAACCTGCTTTTGTTCTTCTTTTTTAAACTGTAACATTATTCATTGTTCCAGAGAACCAAAATCGAGCAAGGTCACAAGTTACAATTTCTTTTACCAAATGCGGTAAATGGTGATACAAAATCAAACAGAAGTCCATTAAAAGAACCTTCTTTTAAGAAGCACGCTGGTGTGACTTCTTACATACAATAGAAATGTTTTCAGATTCGATGTTCTCACCTTACAGTGGCGGTGTGTTCAGACAGATATACCATAGTTAGATATCTTTTTAACCTCTTTATTAAGAACCCTTCTCTCGCGTTTAGCTTGTGATGCAAGTTGGGACACTTCGGACCGGAATCCTGATGCGTCTCTCTTAGGAAGCTCTGACAGTATATCCTTCAAGCCCCCTGCTTGTCTTTCAATCTTATAACCCGAGCTTATGACACCCTGGATTTGCTTTCCTGCTTGTCTTAGTTTTGTCGTTGCCCGTTTTAGCTCTACTTCTGCACCTAAAGAGAGCTTCTCCAATTGCTTCCTTTCTTCTGTTAAGGCTCTAACCGACTCCCGTAACTTTTGTACCTTGGCATTAGCTTTAGCAAGCATGGCCTCGTCATTGCTAAAAAGACGCAGGGTGCTGTAGTATAAAGAGCGCCTTGTCCGTTTTAGGGCCCATATCCCTGAGCCAAAAACCAGTCCAGTTGTAGCAAATGGATGTGAAGCGGTAAAGTAAACAC | |||||||||
gi|90452132|gb|DY914015.1|DY914015 CHAX9455.b1_M12.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX9455, mRN TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AAAGGAACGGACAATTTCCATTTTTATCCTTCTTTTTTAGAAAGAGAGAGAGAGAGAAAGTGGATGCGAACGAACAGAGATTAAAACCTAATCAAGCGATTCCGGTATTGATTCTGACGATGATAACGATTATTACTATTATGCATCTGAAAACGCTACATTCTTCATAATTCATCATCATCTGACGGGTTGCCATCTCGAAGAATAATAGGCGCCAAACGGCGATCCTGAATTTCTAGATCGATAATTTGTTCCTTCACCGGTTAATTAACGAAAGCGATTAAGAAGAAGAAGAAGCAATGGCCGGTGCTGATGCAGATGTTACGGCGGCTCCGGCAGGGCCGCCTCCGCCGCTCGATTGGAAATTCTCGCAGGTGTTCGGTGAACGGACCGCCGGTGAAGAAGTTCAGGAAGTTGATATAATTTCGGCTATTGAATTTGATAAAAGCGGTGACCATCTTGCTACTGGTGATCGTGGGGGAAGAGTGGTATTATTCGAGAGGACTGATACAAAGGAGCATGGTCATGGTGGAAGTAGAAAAGATTTAGAGAAAACCGATTACCAGAGTAATAGGCATCCAGAATTCCGTTACAAAACTGAGTTCCAGAGCCATGAACCTGAGTTTGATTATTTGAAGAGTTTGGAGATTGAGGAGAAAATTAACAAAATTAGATGGTGCCAAACAGCCAATGGTGCCCTTTTTCTTCTGTCTACCAATGACAAAACAATCAAATTCTGGAAGGTCTAAGAAAAAAGGTTAAGAAAGTTGCTGAAATGAACATGGATTCTTTAAAGGGCTGTGGAAATGGAAGTAT | |||||||||
gi|22308424|gb|BQ909645.1|BQ909645 QHA11N06.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHA11N06, mRNA sequenc TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCATCTTCTTGTTGAGCCCAAGAGTGTTCTCTATCTTCTGTCAAATTCGAAACACACGATACATAATTCTTCGGTGTCTGATCCAACTAACAACCTGGTACAGTTCAATGGTTCAGTGAGTCAGCATTCAGGTCCACGTCTTCTGTCACGAGATGTAACAGGACCGAATAGTGGTCACGCTAATAATCAGTTGATTGGGATGGTTCACTTCCGGACTGAAGGATTGTTAGAAAATGAAGCGGCACGGGTCCTCTCGTTTTCTTGGGATTAATCACCATCTCAAAACTTGGCTACCATATTAAAAGTGATGAATTGTTAAGCAACTGTAATGATAAAATAAACTGTTTGTTGATTGTTATGTAACTGTAATGATCCAATCTACAATGATTGCTCAGCAGTAACTGATTGGCTGTTGTATTATGTATTTAGTTTGATGTTG | |||||||||
gi|90467030|gb|DY928909.1|DY928909 CHAZ3643.b1_F23.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ3643, mRN TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TATGAGTTGGTGAAATACCGCAGAGTATACATGGTGTGTAAATACCGCGTCAGTTGCCATTCTGTATTTGTGCTGCACAACTGTGCATGTAACACATCCGGGCGATCCTCTATCGTATCACGCTGCTGTTCGAGCTCGAAATGTACTGAGTCATATTATCCGACTCCAAGCTGTATCACTCACAAGCCACTCGGGGTGTCAGTATCTTGCACAGCCTCCAGCAGCTTGCGCTGCTCTAATGCCCACTAGATTTTGTCAGCCAAGATGCCGGTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACTATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCCAAGGTTTATCCTAGACAATCCAACTTAAACTAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGGACTGAAGGTAAT | |||||||||
gi|22385698|gb|BQ968177.1|BQ968177 QHB33B17.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB33B17, mRNA sequenc TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGTTAGAATTTGATGGGAAGAAGCGGAGCTGTCGCCAGAGGCTTTCTGACCACAATGCCCGTCGCCGAAAGCCACAAAAAGAAAAAGAAACTGTCCACTTTAACTCAAGAAGTCAGTCTTCATCATTTTATGATGGGCAACATCAAATAAGTTTTGTGTCTAACAATGTTCCTGAACTGGTTCAACCCGAACCTGCTTTGAACTCTATTTGGGAAACCACACGCAATTCCCAGCACACAGCCGGTGTTTTTCATCAAGGTTTGTTTTCCTAATTACTCTATCGACAGTAGTTTTGATAATTTATCGTATGATTAGTTACTTTCGTATGCATGTTCCAACGCAAAAGCATACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATGTGAGTCGGACTTCAGCGCACTTGACCAACCCATGCATGCAAATGGTACCACTATGGCGCAACATGGGATGCATTCCGCTCACCACAATTTGTCACCTGAGAACTGGCAAGTTGACCCCCACATTCAAGAATCTCATATTCTCAAAGAACCGTATGGATATTATTAATATGTGAATTAAATTG | |||||||||
gi|90449914|gb|DY911797.1|DY911797 CHAX7105.b1_A02.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX7105, mRN TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TCCTTCGTTTTCCAATTCTCCTTTTAGAGAGAGAAAGTGTGTGTGTGTGTGAAGAAGAGAGAGAAAATAGAATAATCGCATCGTAATCTCTGAATGAATTGCGATTTGGTGATGTTGTTGTTGATGATGATAATGATTACGACGATGCTCGATAATCGTAATTGATTATTGAATCTGAAACAGGCTCTTTTATTTTATATACATATGTATTGTTTGTTGATGGAATTAACTGAGGATTTCGGAGGATACGATCGTGTAGAAATAGCGATTGAATCATCGATCGCGTGATTGTTGTTGTTGATTTGGTTTTAGTTTGGATTCAGTTGATCGATTTATCGTTTGATTGATTTGAATATCGAAAAAGAGGAGAAATGAACGGTGGCGATGGCGGAGATGTTGCGGCAGCTCCCGACGGTCCTCCACCGCCTCTTGACTGGAAATTCTCTCAGGTGTTTGGTGAACGTACCGCCGGTGAAGAAGTGCAGGAAGTTGATATCATATCCGCAATTGAATTCGATAAAAGTGGTGATCATCTTGCTACCGGTGATCGTGGGGGCAGAGTAGTATTATTTGAGAGGACTGATAAAAAGGAGCATGGTGGGAATAGAAGGGATTTAGAGAAGACTGATTATTCAAGTAGTAGGCATCCAGAATTTCGCTACAAAACTGAGTTTCAGAGCCATGAACCTGAGTTTGATTATTTAAAGAGTTTAGAGATTGAGGAGAAAATTAACAAAATCAGATGGTGCCAAACAGCCAATGGTGCCCTCTTTCTTCTGTCTACGAATGATAAAACCATTAAATACTGGAAGGTCCAAGAGAAGAAGATTAAAAAAGTTGCTGACGTCAGCATGGAGCCATCTAAACTAACTGGGAATGGCAATGTTGCTAGTTCCAGTGTTATTTC | |||||||||
gi|22389665|gb|BQ972142.1|BQ972142 QHC1d05.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHC1d05, mRNA sequence TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGAGGGTGGTATTATTCGAGAGGACTGATACAAAGGAGCACGGTGGAAGTAGAAAGGATTTAGAGAAAACCGATTACCCAAGTAGTAGGCATCCAGAATTCCGTTACAAAACCGAGTTCCAGAGCCATGAACCTGAGTTTGATTACCTAAAGAGTTTGGAGATCGAGGAGAAAATTAACAAAATTAAATGGTGCCAAACAGCCAATGGTGCCCTTTTTCTTCTGTCTACTAATGACAAAACCATCAAATTCTGGAAGGTCCAAGAAAAAAAGATTAAGAAAATTGCTGACTTGAATTTGGAACCTGTAAAAGCTGTTGGAAATGGAAGTATTGCAAGTTCTAGTGTTTCTTCAGTTAATAATTTGTTACATACTGGAAATGGGGAGTACACAGATAAATCTTACACTAGTTTGAACAAGGACTCTTCTTCTTCAGGGGCAATTCAGTCATTGCGCTTACCAGTGGTAACTAGTAATGAGACAAGCCTTGTTGCAAGATGTAGAAGAGTGTATGCTCATGCTCATGATTATCATATCAATTCTATATCAAATAACAGTGACGGTGAAACATTCATATCAGCCGATGATCTTCGGATAAACCTATGGAATCTGGAAATTAGCAATCAAAGTTTCAACATTGTAGATGTCAAGCCTGCAAATATGGAGGACCTCACTGA | |||||||||
gi|90469686|gb|DY931544.1|DY931544 CHAZ6448.b1_P04.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ6448, mRN TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGCATTTCTTTGAGAATAGTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGGAGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGTCACACAGGCGGTGGATCGTCTAGTGTAACGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGCCGTATCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGGCACAATGAAAGGCGAAGGAAGAACAACTCACTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGTTTATCCAAGAGAATCCAACTTAAACTAGATGGAAAACCTAAATAAAGGAATCTATGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAAGGTAATGTATAATTAATTATTCTTGTTTGACTTTCTAAAGTCATATTCACCGTTGAATATAACCAATAAACAATACATGAAAGAATGACCTCAGATTATAGTTTGACTTTCCTAAAGTCAAAATACTGAAC | |||||||||
gi|90448306|gb|DY910189.1|DY910189 CHAX5155.b1_F17.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX5155, mRN TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TGGCGGGGAGAAGAAAGAAAAAAGAGCCAGTGTGTGCGCCAAACAACACACAGATAGATAATTGAATCTCAAATCCATCAACGAATCGATCTTCTGCTCTTCACCATCATAACAAAAAAACCTAATTCAACCTCCAAATGCCACATTATTCTTCATCGATCTGTCTCACACGATCCAAAAAATGCTAATCGGATTCGGTTGATGCGTTCCTGATTCGATTCAGTTTGTAGAGATTTCGGTAATTTTGTTTATTGTTCGGTTGATTAATTAATAGAAGAGGAAATGAACGGTGGTGATGGAGGAGGAGGTGTTGCGGCAGCTCCGGCGGATCCACCACCGCCGCTTGACTGGAAATTCTCACAGGTGTTTGGTGAACGAACCGCCGGTGAAGAAGTTCAGGAAGTGGATATCATCTCAGCAATTGAGTTTGATAAAAGCGGTGATCATCTTGCAACTGGCGATCGTGGGGGCAGGGTGGTATTATTTGAGAGAACAGATACAAAGGAGAATGGTGGAAGTAGAAAGGATTTAGAGAAGATTGATTACGCTACAAGTAGACATCCAGAGTTTCGTTACAAAACTGAATTCCAAAGCCATGAACCTGAGTTTGATTATTTAAAGAGTTTGGAGATTGAGGAGAAAATTAACAAAATTAGATGGTGCCAAACAGCCAATGGTGCCCTTTTTCTTCTGTCGACTAACGATAAAACCATTAAGTTCTGGAAGGTTCAAGAGAAGAAAGTCAAGANAGTTGCAAGCATGAATATGGACCCTTCTAAAGTTGTGGAAAGAGCAATATTGGCAGTTCAAGTGTTTCATCAAGTACTAATTCTCATCTTGCAAATGGGGGATACAAAGATACATCGTCCACTAATTTGATCAACGACTTCAA | |||||||||
gi|90467303|gb|DY929182.1|DY929182 CHAZ4267.b1_E11.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ4267, mRN TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGGGGATGAGGGAGGGAGGGTATGGACGATAAGTTTATAAATGAGATGATGGAAGAATGGATTGAGGATGATGATCATGATAATGATGATAGGAAAAAGGGTATAATGGGAAAGAAGAGTTCTAGTAGTAGTAGTAGTAGTGGTAGCTTTTGCCAGGTGGAAGACTGCTCAAGTGATATGAGTCGAGCCAAAACATATCATCGGAGACACAAAGTATGTGAGTTTCATGCTAAGGCTCCAATCGTTGTCATTAGTGGACGCCAACAACGTTTTTGCCAGCAATGCAGCAGGTTTCACGACTTAACTGAATTTGATGATGCCAAAAGGAGTTGTCGTAGGCGCTTAGCTGGACACAACGAACGCAGGCGTAAGACCTCCTATGGAGAAACTTCTGGTTAACGATAATGATAACGATAATATTATTATCGCCAAATAAGAAATATATGTCCGGTAGCAGTAGCGGTAGCCACGCTCCCTCTCTTCTGTCAGTCCCTAAATATATTATCTATTTCGATGCATGGCCATACTTGTACTAAATAACGCAATGCTAATAAATTAAAGAAACCTTCCAGTTCCNNANA | |||||||||