| mature miRNA: TTGACAGAAGAGAGAGAGCAC species: Nicotiana benthamiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|39857286|gb|CK284078.1|CK284078 EST746800 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAAACTGAATGGGGGGCACCTTTTATTATTTATCAATGATTTGACTCGAAGAAGGTTGTGATGAATGGGCTCAGTAAGTCGGAAATGGAACTTCTGGCTTCTGCTTCTTCTTCTACTTCTACTAATTCTACTTCCCCTGACTCTCCTCCCAACACTTTAAAATTTGGTCAAAAAATCTACTTTGAGCATGTTGGACTTCAGCACCTCAAATCAGCAACTGGGTCGTCGTCGTCATCGCCGCCGGTCATCGGAACTCCGGCGCCGGCGATGTCCAAGAAAGGAAGAGGGGGTGGTGTAGTTCAAGGTCGGCAACCACCTAGGTGTCAAGTTGAAGGGTGTGAAGCAGATCTGAGTGATGTTAAGGCTTACTATTCAAGGCACAAAGTCTGTGCTACACATTCTAAGTCTCCTGTGGTCATTGTTGCTGGTCTTGAACAAAGATTTTGTCAACAGTGTAGCAGGTTTCATCGGTTGCCAGAATTTGACCAAGGGAAACGCAGTTGCCGCAGGCGCCTAGCAGGCCATAATGAGCGTCGGAGGAAACCTCCACCTGGATCTCTTTTGTCTAATCGCTATGGAAGTCTTTCTTCATCAATATTTGAAAACAATGGCAGATCTGGAAGTTTTCTGGTTGACTTCACTGCATATCCGAATCTCACTGGAGGTGCATGGCCAAATACTAGATCATCTGATCGAGGATGGGATAATCAATCCACTGCGTCAGGGAAGCTTCTCCAAAGTCATTGGCTGAACAGTTCTGAAAATCCGACATCCGACCTTGTTCTGCAAGGTTCAGTTGCTAGGGGTGCCAATTATTCTGGTCCTGGTATTATTCCTTCCGGAAACTGCTTCTCTGGAGTCTCAGATTCCAATGGTGCTCTCTCTCTTCTGTCAAATGAGCCATGGGGCTCGAGGAACCATCCTCTAGCCTCGGGG | |||||||||
gi|39864108|gb|CK287504.1|CK287504 EST750226 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATCAAAAACATTAGCTTTTACCATCAGAGTTAGCAAAATCAAAAAGGATAAAGAACATATTTACATAATTTTGTAAGCCTGTCGAATCAAAAAATACCCATAACACTACCCTCAAAAATCTAACGGAACTCATTCCTTAATGCGATCTGTTCTGGACCTGGTGTTATAGGAATTAGAATTTGTGCCTTCTTTCTTCTGTTGGGATGATGAGGATGAAGAAAAAAACAAAGGAAATCCAAATTTTGAAGAACCTCTTAAGGAACAAACTGGAACATTAAGAACAGGAGTAACACGGACATTAGCTGAATAAAATCTCTCCATTCCTCTGTGCTTATATCTAGGCCCACCATTGAAGGGGCTGGGACTGCTTGAGCTTCTCTCTAGGCTGTGAAATACAATCTTCCCCGACGAGTTCATG | |||||||||
gi|39881795|gb|CK296424.1|CK296424 EST759138 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTAGAGACATAAAATAGAATAAATATCTAGATTTAGTTATAATTTCGTCTCTTTTCCTTTGCAATTTAGGGCTTAATTGGCTAAAGAGTTTGAAGCTAACTTATCCAAAAAATAAAAAAAATGGAATGAAAAATAAAGGGTCCGAATGTTTGCCCATGGTAAAGACCCATTTATTTTATTAGGTATTTTATTTTGTACAGTGGAAAAATATATAAATGAAGGGAAAGTAATGACTCACTTAAGTGATAAGTGTGATATGAGATATCCAGTGGATGAAACTAGCGCACAAATTTATAATTAATAGAGCGTAAACAGCAGAGTGAGGATTAATGTATTTCGTATCTATTGGCGTTAGGGCTTAATTAAGTTGGAAGCTCTTTTGTGCAAGTTTTTCCATTATAACAAGTCATGTATTTTTTCAAGTTTTCTATCTGGTATAAAGGGAAAGAAGAATATTCTTTTATGGTAAAAACCAACGCCCTCAAACTGCCAACCTAGGAGCTCAACAGTGGGCCCTTCTCACGTATGCTCTCTTTGTGACTCTAACTCCAGCTTTATCGGGGGGGGGGGGGGGGTCCTTACGACCAAGCGCTCTCTCTCTCTTTTGTCACAATGGAAAAAGATTTATAAGCACATCAAAGAAATAAGTAGTGTCATATTGTCTTTAAAGTGACATGAGTTTTTTTTTTTTGGTTTATGCCATAAGTTCTTAGAAATAAGCACAAGCAAAAGTGGAAGGGGTAGCCCATCTATTTGATACGAGCTATAGAGAAAGACCCAATTAGACCAAGGATCAGATAGTCAACTAACTTTCCCTTT | |||||||||
gi|39876278|gb|CK293650.1|CK293650 EST756364 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AATGATTTGACCCCTTAAAGCTGTGGAATGAATGGGCAGTGGAATTCGGTAATGGAACTGGGTTCAGTTTCTTCTCCTGGTAGTAACTCAAGCTCCTCCGACTCTCTCAATGGTTTGAAGTTTGGCAAGAAAATTTACTTTGAAAATGTGGGTGGTGGGTCATCGCCGGTGACGGGAGCCGGGAACTTGCCGCCGGCCTCCAAGAGGGGGAGGGGTGGGTTGATGCAAGGTGGTCAGCCACCTAGGTGTCAAGTTGAAGGTTGTCAGGTAGATCTGAGTGATGCTAAGGCTTATTATTCGAGGCATAAAGTTTGTGGTATGCACTCTAAGTCCCCTACTGTTATTGTTGCTGGTCTTGAACAGAGGTTTTGTCAACAGTGTAGCAGGTTCCATCAATTGCCAGAATTTGACCAAGGAAAAAGAAGTTGCCGCAGGCGCCTGGCATGCCATAATGAGCGCCGCAGGAAGCCTCCATCTGGATCTCTTTTCTCTACACATTACGGGAGCCTTTCTTCATCAATTTTTGGTTTGATAGAATTCCTTTCCGTTTTCTCTTTGTCTGCACTATACTCGAAAATTTATGCTCTTCTCTTTTCCTTTTATAAAAAGGAAAGAACATTATGCTGACTCTGGTTATTTTGATTTGAACTGATAGAAAATAATAGCAGCAAATCTGGAAGCTTTCTGTTAGACTTCAGCTCACACCCACATGTCAACGAGAGTTCGTGGCCAAATACTAGAGCATCTGAACAAGGATGGGATCATCAATCTACTGCATCAGGGAAGTTTCTTCAGCGTCCTTGGCTTAATAATTCTGAAAACGCTACATCTGAGTTAGTTCTGCAAGGTTCACCCACCAGGACCAATTATGTTCCTTCAGGGGGAATGTTTTTTCTGGAGTCTCAGACTCACGAACTGGTGCTCTCTCTCTTCTGTCAAATCGGTCCCTGGGGAT | |||||||||
gi|39861945|gb|CK286410.1|CK286410 EST749132 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGTCTCTACAAACTGAATGGGGGGCACCTTTTATTATTTATCAATGATTTGACTCGAAGAAGGTTGTGATGAATGGGCTCAGTAAGTCGGAAATGGAACTTCTGGCTTCTGCTTCTTCTTCTACTTCTACTAATTCTACTTCCCCTGACTCTCCTCCCAACACTTTAAAATTTGGTCAAAAAATCTACTTTGAGCATGTTGGACTTCAGCACCTCAAATCAGCAACTGGGTCGTCGTCGTCATCGCCGCCGGTCATCGGAACTCCGGCGCCGGCGATGTCCAAGAAAGGAAGAGGGGGTGGTGTAGTTCAAGGTCGGCAACCACCTAGGTGTCAAGTTGAAGGGTGTGAAGCAGATCTGAGTGATGTTAAGGCTTACTATTCAAGGCACAAAGTCTGTGCTACACATTCTAAGTCTCCTGTGGTCATTGTTGCTGGTCTTGAACAAAGATTTTGTCAACAGTGTAGCAGGTTTCATCGGTTGCCAGAATTTGACCAAGGGAAACGCAGTTGCCGCAGGCGCCTAGCAGGCCATAATGAGCGTCGGAGGAAACCTCCACCTGGATCTCTTTTGTCTAATCGCTATGGAAGTCTTTCTTCATCAATATTTGAAAACAATGGCAGATCTGGAAGTTTTCTGGTTGACTTCACTGCATATCCGAATCTCACTGGAGGTGCATGGCCAAATACTAGATCATCTGATCGAGGATGGGATAATCAATCCACTGCGTCAGGGAAGCTTCTCCAAAGTCATTGGCTGAACAGTTCTGAAAATCCGACATCCGACCTTGTTCTGCAAGGTTCAGTTGCTAGGGGTGCCAATTATTCTGGTCCTGGTATTATTCCTTCCGGAAACTGCTTCTCTGGAGTCTCAGATTCCAATGGTGCTCTCTCTCTTCTGTCAAATGAGCCATGGGGCTCGAGGAACCAATCCTCTAGCCTCGGGG | |||||||||
gi|120550291|gb|EH369155.1|EH369155 C10_j001_plate_70 j001 Nicotiana benthamiana cDNA 5' similar to Putative squamosa-promoter b TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCGCCTACTCCGCATGGCAGCCCATATCCATGGTATGCCATTGAAGAACATAGCAGAAACAGAGGAGAGTAGCTTGCAGAGGAAAACATTGAATGTTGAAAAGAAAAAAGGGTCAAATAGTGAAGGACCCTGTTGTCAAGTGGAGAAATGTGGGGTTCATCTGTGTGCTGCAAACAAGTACTACAAAAGACATAAACTTTGTCAACTCCATGCTTGCTCCAATTGTTCTTCTTGCTGGCTTAAGGCAGAGGTTCTGCCAACAATGCAGCAGGTTCCATGAGGTCTCAGAATTTGATGGCACTAAAAGGAGTTGTCGCCGGCATCTAGCAGGACACAATGAGCGGCGTCGGAAAACCCCACTAGCCATTAAGCTGGAAGATAACCAATGCAGGCAGATGAATGAGGAAAACAGACAACAGAAAACCTTGACAAACAGAAATGCCTCCTTCAAAACCTATCACATCCTCTAGATGAATGCTTACTCTCCTCTGTCAACCCGTAACATCTTTCTTATCCCTTTGTGTTGTTAACTTATAGTCAGACCCAAATGTAAACGCTAGATGTTTGTTCAGTTATTTCTACAACTGCAGCTATCACATGAAAAAAAAAAAAAA | |||||||||
gi|120551340|gb|EH370204.1|EH370204 C08_j001_plate_52 j001 Nicotiana benthamiana cDNA 5' similar to External rotenone-insensitiv TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAGCTCTTCGTAGCCATTCTTCTTATTCTAAACTTCTGCTTCTCTCTTCTGTCAGTACTGGAGGTCTGTTGGTATATGCAGAATCGAACATAGAGGACGGAAAACAAGTTGTTGAAAATAATCAATTGGTGCCAGAGAAAAAGAGAGTAGTGGTGCTTGGAACAGGATGGGCTGGTACCAGCTTCCTAACGGATCTTGATATTTCTTCCTATGACGTTCAAGTGGTTTCAGCCTGAAACTATTTTGCATTTACACCGCTTTTACCTAGTGTCACATGTGGAACAGTTGAGGCACGTAGCATCGTTGAGCCAGTCGGAACATAATAAAGAAGGTAAAACAAGCTTCGGTGAGGAACTTGTTTTATATCTGGATCTCCGGTTTTTGTTTTCATGTCATTAGTAATTTTATGCTGTACTCACAAGATTTTGTATGACTGGCTGACTGCACAGCTTTGTCCACTCTTTCTTAGAAAGATTCGTTTGCCCATGTAAAAAAAAAAAAAAAAGG | |||||||||
gi|120550256|gb|EH369120.1|EH369120 B02_j001_plate_105 j001 Nicotiana benthamiana cDNA 5' similar to Putative ATPase with chaper TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGAAAAGCTCTTTCCGCCCTAAGAATATACGAGGTTTAAATACATCTACAAGTGATTATAAGTTGGATGTTGCATCCAATCTTCCACGACGTGCTCATTCTCTTCTGTCAAGAAACTCTTTGGGTTTGTATGATCCTACACATACTTCCATGGAGCAGCTTATAATGCCTGCAAGTGTCGGTGAATCACAGCCGTTTGAGCACTCTGTAACACCAAACTGGCAACAAATTTCATCAGAACATTTTCATGTTTTATTTCAAGTGCCTTTCTACTCCCCACGTTGCTTCAATGGATCTGCCTGATATGACATATATGCAGCAGCTCTTCCAAGAGTTTTTAACAGTTTGGCATATTCTTTTTCATGCCAAATAACTCATACCAACAATGCCATCTATTTCTGGTGGACCATAGATGTGGTAACCGTCTCTTTGTGGTCAAATAGTAAGGCAAACAACGCAAAGCATGAGATGTAATATTTCAACCGCATGAGGTCTCTTTGCCACTTAAAATAAGTAGTTTCATGACCAATT | |||||||||
gi|39883761|gb|CK297412.1|CK297412 EST760126 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATCAAAAACATTAGCTTTTACCATCAGAGTTAGCAAAATCAAAAAGGATAAAGAACATATTTACATAATTTTGTAAGCCTGTCGAATCAGAAAATACCCATAACACTACCCTCAAAAATCTAACGGAACTCATTCCTTAATGCGATCTGTTCTGGACCTGGTGTTATAGGAATTAGAATTTGTGCCTTCTTTCTTCTGTTGGGATGATGAGGATGAAGAAGAAAACAAAGGAAATCCAAATTTTGAAGAACCTCTTAAGGAACAAACTGGAACATTAAGAACAGGAGTAACACGGACATTAGCTGAATAAGATCTCTCCATTCCTCTGTGCTTATATCTAGGCCCACCATTGAAGGTGCTGGGACTGCTTGAGCTTCTCTCTAGGCTGTGAAATACAATCTTCCCCGACGAGTTCATGCGAGGACTATCAACAGAGACTCCTCGGGCATGAGTTGTAACAGTACTACTAGAGTCTGCTGCCGGTTGTCTACGAACTGGGCTTCGGCCCGCTCTCGCGGCTTCAGACGATGATACCCTATGCTTCACCATTCGTACCCTGCGAGAATTAGTCATTGCATTGCGAGAGAAATTGCTTGGTTTATCCGAATCGAGGGAAAGCCTAGGAAGATCATCGTGGTCATGGCCTGAAGAGGAGGACGAAAGTGATAATCTAGAAGAAATTGAAACGGACTCGTTATCGGAGTCTTTCTGCAGCAACGGAAGGTTAAGAGACGAGTCTAAAGAAGCGCTCAAGGATTTAGAGCTACGATGAAAATAATTTTTCAAGGATTTATGAGCACTACTACTGCTAGGTAATGAAGACGTTCTCTGTGTATCTTGCTTAGCATTGTTGTTGTTGTTGTTCTGATG | |||||||||
gi|120549092|gb|EH367956.1|EH367956 C05_j001_plate_131 j001 Nicotiana benthamiana cDNA 5' similar to Predicted protein, mRNA seq TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGGTGAGGAAGAAGAAAAGGAAGAGGAATAAAAACAAGAAGAGAAGATTGAGGATGAGGAGGTGAAGAAGCTGAGGAAGACAAAGAAAATTAACGCAGAAGAGAAAGAGGACGAGGAAGAAGAAAAAGAAGAGGAGTAAGCAGCAGAAGAGTAGGCGCGCCTACTCCGGGAAGTTCCTCGTGCTCTCTCTCTTCTGTCAACTAATTCATGGGGTTCATCCGAGCCTGAGACTGTTTCTCTGAACAACCCATTTTATGCAAATCAGAGCAGCATGCCCCAGCAGATGATGCAGGCAATTTCACAAGGTGTGCCACTTATGTCCTGTGAATACTGGCAGGGTGGACAGCCTTCATCCGATCCTCGTGACCATACATTGGCTGCTAATAGTCATGCTGGTGGTAGCTTTCAGGGAATCGAGCTGTTCAAACCTCCATTTGACACTGACTTTTATCTCAATGCATTGAACTGAAGCCAACATCTGATGTCTTTAGTGACTTTGGCCAGTTCCCCTTTTCGCCTTTTGAAACGTTATCAAGCAGGAGGTTTATTAGTAGGCTATTTCAAGCAGTTTGTTTGCCATCTTAAATTAGTACTGGTATATATACTATATATAGGTTGGGCTTTGAAAC | |||||||||
gi|39850815|gb|CK280814.1|CK280814 EST743536 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TTGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CCAAAACCCTGGAGCACCGTCCTGACTTTCCACCGCCTCAGGCCGGCAGCGCCACTCGCAAATCGCCTCAAATTAACGCCATGGAATCCCTATTGTTCCCTCTCCCCAAATCTCTAACTCTTTTCCCTTGAATCACCCTACTTCCTTTTGAATCTTGGATTGAAGTTGAAGCCTTAAAAGCCCAAAACCAAACCCATACATGTAAGGCTATTTCCTTAATTTTTCCTGGTTATTCAAGGTCGATTTTATCACAAAATAATGTTGTTCGCCTGTTCATGATGGAGAACAAGCGATTGAAATTATTAGGGGTTTAAATCGAAATATCAGTCTTGAATTCGAGTTTGGTCGGTGAGTTCCTTCGTTCGTCTTTGTGCTATTTCAACATTCATTGATCTTTATGTCTTCTCTTTCTCTTTTGTTAATTCGACTGAAACTCAACCAAAGTTTCTGGTCGATTTGAGCGGTGATCGCTTGTTCCCTTTAGTTTTCTTTTTTTCAAATCCTATAAGTTGGTTCTTTGATTTTCAATAATCTGTTTAGTTTTATTAATGTTATATTTTAAACCTCTGATTTCATCTTCTTTTTTTAATTTAGTTAAATTATTTTTTTAATAACTTATTTTAATTCCGTATTAATGAGTCCATTAGTTTAGGTTTTAGCGTTTCTTAAAATCATTTAGATGTTTTCTTCCTGTTTGTCATAAATTGCCAAATCCTAAATCGGATTCTATCTCCACTGTTTGGCCCTTCCCCATAAGGCCCCACCGTCGGGGCATAAACGCCCTCTTGCTACCCATATGCGAGGCGCTGTCTTAGCCTTCCCTGACCAGGATCGCTCGCGACCTGTAGCGTTCGTGATCGGGCTCCTCAACTGTGTATCTATC | |||||||||