| mature miRNA: TTGACAGAAGAGAGTNAGCAC species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88349886|gb|CI634421.1|CI634421 CI634421 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GGACAGAAACAAACACGAGTACAGAGTTCAGAACAGAACTGAAGATGATAAATTCAGAGCCCCCCCAAAAAGTGTCCCTTTTAATCTGTTGGGCAGTCTAATTCTAAATTATTCTCTCCAAATTGCAGGATCATATATATGAATACCTGATATTCTGATGATGCATATGATTTGTGATGATTTTCAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGNGGCCCGGCCGANGTTCAGGCCGG | |||||||||
gi|44671936|gb|CR285370.1|CR285370 CR285370 Oryza sativa library (Han B) Oryza sativa cDNA clone p648f11p3, mRNA sequence TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTGAGCAAAATACTTTTGATTCAACAGAAAGAGATCCAATCTATGATGTTTGGCAGTACCAAATTCAGGACATGAAAAGCAAAAGGGAGAAATTTTATAGTCTCAACAACATGAACTGTAGCCAAATAACAGATAGGCTGCCAACATGGTGGCCAAAGGAACGGAGATATTGTCATCCACAACATCATTGACAGGAATACACTCCACTACAGTAGCTGCTAATGCAACAAGAGCCAGTTTACCAAGTGCCAGATCCCAGCAGACAGTGAAGTAACCAAGGCAAGAGAAGTAGAACAGCATCAGTGCAGATAGAAGGAAGCCAGAAATGAACATTGAGATGCTTCCTATCCAGCTCTTGTTCTCATTGAATGGCAGCTTCGCGGAGCCATACCTTCTCCCAACAATGTCAGCAAAGCCACCACCACCACCAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCAATGGCCAAGATACTTCATTTTTGCGCCCCA | |||||||||
gi|88348825|gb|CI631912.1|CI631912 CI631912 Oryza sativa (japonica cultivar-group) callus 2ppm ABA(abcisic acid) Oryza sativa Ja TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): AGGTGCATGCTGCAGGCAGAGCTCACTCTCTTCTGTCAACTGCCACCCACCAAAACCAAGAAAACAGAAAACCATTAGGTAGACAGACATAGCCACATAGGAGCGAGAGAGCCACTAGCTGCCGGCTGACCGGCCGGCGGCGGAGATGTGCCGCCGGAGTGGGAGAAGAAAGGTGGGCGCTACCTAGCTCAGATCTGTGTGCTTCGATTGATTGGTGGTGTGTGACCATAGCCCGGTGGATGCAGCATTATATATAGAGGGGGGAAGAGACCATGGTTCATAAATCCTTTACCCCATATCTCTCTTTTCCTGCTTCCCTCATGATATGCCATATACGGCTGCTGTTCTAGCTTAGGGTTTGGCCGGCCGCCGCTGGCGTATCCCGGAAAGGATACAATATC | |||||||||
gi|58599831|gb|CK010359.1|CK010359 28709rsicef_5939.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCGATTCTTGATCCAGAAGAGCATCGCAGGTTCAGAAGCTTTACGTTGGATTTCTCCTACCCAAGGGTTCCAAGCAGCGTAAGGAATGCATGGCCAGCAATTCAACCAGGCGATCGGATCTCCGGTGGTATCCAGTGGCACAGGAACGTAGCTCCTCATGGTCACTCTAGTGCAGTGGCGGGATATGGTGCCAACACATACAGCGGCCAAGGTAGCTCTTCTTCAGGGCCACCGGTGTTCGCTGGCCCAAATCTCCCTCCAGGTGGATGTCTCGCAGGGGTCGGTGCCGCCACCGACTCGAGCTGTGCTCTCTCTCTTCTGTCAACCCAGC | |||||||||
gi|117252138|gb|CT844319.1|CT844319 CT844319 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): AATCTGTTGGGCGGTCTAATTCTAAATTATTCTCTCCAAATTGCAGGATCATATATATGAATACCTGATATTCTGATGATGCATATGATTTGTGATGATTTTCAGGTGTGGATCCAGCCTGTGCCGTCGTGTCCTCCAACTCGAATGGAGCCCCGGATCTTCGGCGTGCTCTCTCTCTTCTGTCAAGCGATTCCTGGGGCCCGGCCGACGTTCAGGCCGGCTCCCAGGTGCATCCCGGTGGAGTGATGCCGCCCCTCGCCGTTGCCGCCGCCACCGTCACCGCCCCGACGAACCCTGTCAGTGTGATGCATGCTCTGCACCCGTCCACCGGAGGAGGAGGATTCTGGCAAGACGGCGACGACCCGCCTCCGCTCGATCATGCCTCGCAGGCTCAGGCGTTCATGCATCCCGGCAATGGCAGCAGCTCCGGCTATGGCCATCTGCACTGATTCTGCTGCATCTATTTGGAACGGGTTGATGACTGGTTACTCCGTTCATGATCTTACCCTGTCAGTGATGGACTCTGAATAATTTGGGGGCGAATTGTCCTGCAACCCCAGGATTTATTATTTCTATTTTTGAAACCAAACCACCAGGATATTTGCCATTGGATGAGAAGTGTTCATGATCATGAAATGATCTGTTTTGTTCCACAGAATCTGACATATCTACTACTCGTCTGGGGAATGAGCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|58655060|gb|CK043740.1|CK043740 43023rsiceh_10157.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGAGAGAGAGACATACTACACGCACCACCAAATCCCTCTTGGCATCAGCAGCAGGCAGGCAGCATTTCGTTGGCTCCACCTCTGACGGCGGCCGCCGCTTCCCTTTCCTCCAGGAAGGCGAGATCAGCTTCGGCAACGGCGCCGGCGCCGGCGGCGTGCCAATGGATCAGGCAGCAGCTGCTGCTGCTGCTTCAGTGTGCCAGGCACTTCTGAAGACGGTAGCTCCTCCTCCTCCTCCTCATGGCGGCGGCGGCAGCGGCGGCGGCAAGATGTTCTCCGATGGTGGGTTGACACAAGTGCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCAGCTCCGGCGAACTCCACGGCCATCGACGTCGGCGGTGGCCGGGTGGTCGTCCAGCCGACCGAGCACATCCCCATTGCG | |||||||||
gi|88337573|gb|CI630870.1|CI630870 CI630870 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GGTGCATGCTGCAGGGAGAGCTCACTCTCTTCTGTCAACTGCCACCACCCAAAACCAAGAAAACAGAAAATCATTAGGTAGACAGANATACCCACATAGGAGCGAGAGAGCCACCTAGCTGCCGGCTGACCGGCCGGCGGCGGAGATGTGCCGCCGGAGTGGGACAAGAAAGGTGGGCGCTACCTAGCTCAGATCTGTGTGCTCTGATTGATTGGTGGTGTGTGACCATAGCCTGCTGGATGCAGCATTATATATAGAGGGGGGAACACACCATGGTTCATAAATCCTTACCCCATATCTCTCTTTCCCTGCTTNTCTCATGATATGCCATATACGGCTGCTGTTCTAGCTTATGGTTTGGCCGGCCGGCGCTGGCGTATTCCGGAAAGGATTAAATATCATGCTAT | |||||||||
gi|58686075|gb|CK074762.1|CK074762 69454rsicem_14759.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): CACGAGGAGTGATCACCATGCGTTCAGCAGCCATGGTGGCTCAGCGGCTGGGGCACCAATGCTCCACCACCCTGCCTTTGAGCTCACCTCAGGTGGATGTCTCGCGGGAGTCGCCACCGACTCCAGCTGTGCTCTCTCTCTTCTGTCAACTCAGCCATGGGATACTACCCAAAGCACCAGCAGCCACAACCGGTCCCCGCCAATGTCGTCAACGGCCAGCGCCTTCGGAGGCGGCAACAACCCGGTGTCGCCCTCGGTCATGGCAAGCAACTACATGGCGGCGAGCCCCGGCTGGAACAGCTCCAGCCGGGGCCATGACGGCGCCAGGAACGTGCACCTGCCGCCACCGCACGGGGTTGTGCTGAACGAGGTCCCTCCGGGCTCTGTCCACCACGGCCATTTCT | |||||||||
gi|58674377|gb|CK063063.1|CK063063 54169rsicek_2301.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GGCACGAGGTGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCTGCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTTCGTTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTATAAA | |||||||||
gi|38479620|gb|CF963715.1|CF963715 8914rsiced_12594.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GTGGATCCCCCGGGCTGCAGGTGACCGTCCTAAGCAGATGCAAGGCAACAGGCAAGTTTTCTATTGGGTCAAGCTCCTTATGGTCAGATGGGAAGCGGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGACATTGACGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGG | |||||||||
gi|117220961|gb|CT845473.1|CT845473 CT845473 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TTGACAGAAGAGAGTNAGCAC EST sequence (targeted fragment marked with yellow): GCATGTGCGCAGTTCTCGACTGGATGGACCCGTGCCATTTTTGTTTCTTGGAGAGGCATAGGCATAGATTGATTTTGCCTCGCACTGTCTAGTAGCATGGTCATATTTAGCATTCTATCCTAATGTTTTTTTTTGTTTCTACTACTGTACTACTACATAATATGTAATGGGTCATTTCTTGCATTTTGTTAGTCAAACTACACAGTAAAATCCTCAAAATCCAAATCTTGTATTTCTTGTAGTAAGTTGTAACCAAATCCAAAAACCCTAGCCACCAGATCCTGTCATCGCGGGCGAGCCATTACTATTTACTAGTCGTCTTCAAGTTGAAGCAGTTTTTTTCCATCGTTTGTCTTCGTTCTCTTCTGTCAAAGCAGCAGCAATTGCCTTCAGTTTGCCTCGTCCATCCGTCGTCCCCCACCGCGTCTTGTCGTCTCGTCAATCGGCACCGTCCTCGTCGTCGTCGCCGCGTTTCCCTTCGCCAGTTGCAGCCGCCACCGGCAGCGCTCATCTTCACCATCGCCGGCGGCAACCCCGTCCGCCCATCGTCCCGCGGGCGTCCTTGCACCAAGGCCGTTGCCGCTTCCATCTGTCGATTCCTGCCGCTGCGGCTTTAGCTAATGCCCACATTCTAAGCTGCTGCTATGTGCAGACCTGCTGCTGAGGGCTCATCTATTTGGGATCATTTCAGTGGCTGGCATTGTGTCCAACCCAGCAGCTCCTGTTACTACCATTCTTATCTCTGCTTCTCCTGGCTCTGTTTTCCTTCTGTTGTCTCATGAGGATTTTGTGACACTTTAGTTGTGCACTATGTACTAATAATATTACAGGTTGTGCTTGATAGTGTAAGGAAGATATTGTTTTAGAAAATTTACAATCTTGTTATGTTTTTCTGCTGATATTGATATTAGTATTGATTCCATAGCAAATTCGTGTCGTTTTCCATTCTTAGGCAAATTTAAGACCAGTCTTTTCTGCATAGAGTATGTTCGTCAGCTATCTTTGTAGTCCTTGCATTGCTAGAAGTTCCAGAACATCTGGACATGTGAATAGTAGATTTCCAACATTAGGCACACATTTGTGCT | |||||||||