| mature miRNA: TTGACAGAAGATAGAGAGCAC species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308703647|gb|DK480947.1|DK480947 DK480947 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGCCGAAAACCTGACAAAGAGATCATCATCATAGCGTTCACTAATGGTGCCTCTCTGCTCCATTGATTCTCTCTGACAATCCTCTCTCTCTTTTGTCAACGCCTCAAAGAAGGTCATCAGCTTTTCTAATTCAAATTCCGATTTAGGGTTTAATCGAATTTCACTCATCAATTATTATTATTATTATTATTATGTTTTTGCTGTGAGCGAAAATCGATGCTGATTGATTCGTTGATCCAAATAAATAATTCAGCTTTCGTAATCAATAAATAATTCAATAGTATCATTAAGAGCCCCTCTTCTCACACGCAACCTCTCTCTCTCTCTCTCTCTCTCTCGAGTAGTTCGACAATCCAAATCTCCCAACTTGCTGCTTCCTGTAAGTCTCTCTCTCTCCCCAGACGAAAAAGTTGGGAATGTTAGATTAGGAGTTGATGTGATTGGGTTTTCTCTCTTGTTTGGTTACAAAACGATGCTGCTCTCTGGTTCTTTTCAATGAAGGTCTTGTGGTCTCTATATAGTTCCGCTTGTTCTTGATATTATCTGCTAATAAGCTTTTTTTTTTCCTTGCTCAAGCTTCACTCTTTTTAACTTTTCACTTTACAAAGATCCTACCTTTATTTATTAACTTGCTATTTATGGATTTCGATACAGCGAGGGAAGCTTTCTTTTGCTTCATTGCGCGTGTCCCATCCTCTTCTCCACAAGTAAAAGATGGAGGTCAAGCTATGGAACGACAAGCGCGAGCGCGAAACGTACGAGAACTTCTCCGAGCTCTACGCCATCATCAAAGCCACCGAGAAGCTCGAGAAGGCCTACATCCGCGACCTCATCTCCCCTTCCGACTACGAAA | |||||||||
gi|308678292|gb|DK490112.1|DK490112 DK490112 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCTAGCGAGTTATCAACCGAGCCGCTCTCCGAAAGCATAATCGAACCTAGTCACAGGTACTTGATGCTTCTATGTTCTTTCTGAACAATCTTTCATTGATTTTTTTCACTGTTTCTAGCAGCTGCTTTCCTTTGTGATTTACTTTTGTAGACCTTTTGTGATGTTTGGTTAGTTAGAATCTCAGACTAGACTCCGGATTAATGGATTCCAAGTATGTATGATATATATATATATATATTTTTTTTGGTAATTTGGTGACTAATAATCAGCTGTTATTTTTTTTGACATGGTTTCAGATTATAAAAAAAAATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCAATTATGATCCTCGAGGACGAGGGTATTTCTATCACGTCCGACAAGATCGCTACTTTGGTCAAAGCAGCTGGCGTTGAGATTGAGTCATACTGGCCAATGCTATTCGCCAATATGGCTGAGAAACGTAACGTCACTGACCTCATCATGAACGTTGGTGCTGGTGGTGGAGGCGGTGCCCCTGTTGCTGCTGCTGCTCCAGCTGCCGGTGGTGGTGCCGCTGCTGCTGCACCTGCTTCTGAGGAGAAGAAGAAGGAGGAAGTGGCGGAAGAGAGTGATGGTGATTTGGGTTTCGGCTTGTTCGACTAAGCAGCCTGCAATTACTCTTTTTGCTTGTTCGTAGTTTGGTTTTTCATCAATTTGAGACCATTATTTTGTTGCATCATCCGAGTTTGTATTCTGCTGTATTAACTTATGTCTATCCAGTCGTCTCTGTCTTTTGTTAAAATGGATTTTGTTCTTCCTTCTTT | |||||||||
gi|308676942|gb|DK484330.1|DK484330 DK484330 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAGCGAGTTATCAACCGAGCCGCTCTCCGAAAGCATAATCGAACCTAGTCACAGATTATAAAAAAAAATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCAATTATGATCCTCGAGGACGAGGGTATTTCTATCACGTCCGACAAGATCGCTACTTTGGTCAAAGCAGCTGGCGTTGAGATTGAGTCATACTGGCCAATGCTATTCGCCAATATGGCTGAGAAACGTAACGTCACTGACCTCATCATGAACGTTGGTGCTGGTGGTGGAGGCGGTGCCCCTGTTGCTGCTGCTGCTCCAGCTGCCGGTGGTGGTGCCGCTGCTGCTGCACCTGCTTCTGAGGAGAAGAAGAAGGAGGAAGTGGCGGAAGAGAGTGATGGTGATTTGGGTTTCGGCTTGTTCGACTAAGCAGCCTGCAATTACTCTTTTTGCTTGTTCGTAGTTTGGTTTTTCATCAATTTGAGACCATTATTTTGTTGCATCATCAGAGTTTGTATTCTGCTGTATTAACTTATGTCTATCCAGTCGTCTCTGTCTTTTGTTAAAATGGATTTTGTTCTTC | |||||||||
gi|308677653|gb|DK463832.1|DK463832 DK463832 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGGAGTACGAGAAGAAGCAACGCAGAAGGGAAGAGGAGTTTAAGAGAAATGAGTGAGGAAGAGGAGGATACATTTGAAGAAGAAGACGGAGAAGAGCAGGAGGAAGAAGAGGCTTCAGAGAAGAAGCAGAAAGGCAAAGCTACAAGTAGTAGCAGTAATAGTGGAGTTTGTTGTCAGGTGGAGAGATGTACTGCGGATATGAGCCGAGCCAAACAGTACCACAAACGACACAAAGTCTGTGAGTTTCATGCCAAAGCTCCTGTTGTTCGGATCTCTGGTGGTTACCAACGTTTCTGCCAACAATGCAGCAGGTTTCATGACCTCCGTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAATGAGAGAAGGAGGAAAAGCACAAATGAATAAAACCTGTCTGAATGTTAATGAAACAGGCTTTGCTTGCTCTCTTCTGTCAAGTCTCTTTTTAAGCTCCTTGTAATCTTATGTGTCTCTCTCTGTTTCTCAATACTGTATGGAATCAAAAGCTATCTGCTTAACCTAAGACATCAATAAATGCATTGAGACCAAAAAAAAG | |||||||||
gi|308688640|gb|DK564348.1|DK564348 DK564348 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCAGCAGGTAAATGAGAATATGCTACATATTTGAATGTTTTTTTGTGTAATGATTAATGTTAAGATTTGTGTATAATCAGGTTTCATGCTTTGGAAGAGTTTGATGAAGGCAAGAGAAGTTGTACGAAACGTCTTGATGGACACAATCGAAGAAGACGGAAGCCTCAGCCCGACCATATCTCTCGTCCTGCAAACTTCTTTGCCGGTTTCCAAGGTTTCTGTTCTTTGTTTCTTGTATCCAGTAGACTTAGTCCTTAATTAATAGAAGAAGCATCATCTTGTCAGGTAGCAAAATGTTGGAATTTTCCAGCTCTTCGTATGTGTTTCCAACTACATCTGTTGCGAGCCCGAGCTGGGGAAATGGTCTTGTGAGCGTAGCTATGGCCAACGGTTCGAGTAACGGGCAGAACCAGGGAGTTTCTGGTTCCTCTCCTGCAAAGACAGGCATAATGTTCCCAATATCTTCTTCTTCAAGCAGCAGAAGGAAACTATTACCCTCCTTGCAAGAACAAGAGAGCTCAAGAACAGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTGCTCTCTCTCTTCTGTCATCCTCTTCCTCTTCGGTCCCTCATTTGCTTCAGCCGCCACTTTCTTTGTCACAGGAAGCAGCAGAGACGGGTTTTTATGGATTGGGATTGTTTGAGAATGCGACTGCAGTCTCGGATGGATCGGTTATATCCAGTATTGAGGCTGTG | |||||||||
gi|75972943|gb|AM062388.1|AM062388 AM062388 AAFC_WHRI_BoE01a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE01a022C02 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AACCGAGCCGCTCTCCGAAAGCATAATCGAACCTAGTCACAGATTATAAAAAAAAATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCAATTATGATCCTCGAGGACGAGGGTATTTCTATCACGTCCGACAAGATCGCTACTTTGGTCAAAGCAGCTGGCGTTGAGATTGAGTCATACTGGCCAATGCTATTCGCCAATATGGCTGAGAAACGTAACGTCACTGACCTCATCATGAACGTTGGTGCTGGTGGTGGAGGCGGTGCCCCTGTTGCTGCTGCTGCTCCAGCTGCCGGTGGTGGTGCCGCTGCTGCTGCACCTGCTTCTGAGGAGAAGAAGAAGGAGGAAGTGGCGGAAGAGAGTGATGGTGATTTGGGTTTCGGCTTGTTCGACTAAGCAGCCTGCAATTACTCTTTTTGCTTGTTCGTAGTTTGGTTTTTCATCAATTTGAGACCATTATTTTGTTGCATCATCCGAGTTTGTATTCTGCTGTATTAACTTATGTCTATCCAGTCGTCTCTGTCTTTTGTTAAAATGGATTTTGTTCTTCCTTCTTTGACTCGAGTCAAGATATTTAGATCTAG | |||||||||
gi|122027318|gb|EH416183.1|EH416183 OL2223R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGACCACCGTGCAAGTAGACTCGTGAGTTTCAAAGATGAACCTAAGCCAGCGATGGAAGCTTCTGGTGTATCTTATATTTGGGACTTACAAGAGGCGGTGCCACGCTCTACTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCCCAACAACACTTGTCTGCAAATAATCCAAACAAAAGCTTCTCAATCACTCAACCATGCCAAAACCTCAACCACTCCACAGGAGACTATCATCAGATGCAGCCGTTGAGGATCGATCCTGGTAAGAAGACCAAATCTGTTACTAGTTCTAGTTCATGTAATGGAAACGGATCATCCACGGTTGATCTACTGCAACTCTCATCACATCTTCAGAGAATCCAGCAACAACAGAGGACTTTCACTGATGATGTGAAGCAGGAATATAATGAGCTTTATTTCCCCTAGCTCCTAATTAAAATAACGCAAAGCTAAGGCTGCTTGGTTTGGTTTGATTAGTTTGTGAGATTGGTTTGGTGATTTTACTGGATTCGTGAGATGGTTAGATTAGGGGAATGAAGATCAAGTCTGGGTACAACTTACACATGTTTTTTTTTGTAACTGATACTTGTTTATTCTATCTATGCCTGCTTCCTTTG | |||||||||
gi|308637856|gb|DK478648.1|DK478648 DK478648 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clon TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGTACTGTTTAGTTCGAAGTTTGAACCATCTCTGCAACGTGATACTGACCATCCGATTTTTACCGCTACACAACCGTACACCGTCCGATGTTCTTGCTCAATTTACCGCATCACCCAAACGGGCAAACCAAGTAAAAAAATATCCACTTCCTTTCTTCGTAACTTTTCAAAAATATCTTACTGCTTTCTTCTTCTGTCAAAATATTAAATATCTACTTCGTACATTGAAGCCTTTTTTCAGTAATAAAATAAAATTTGAACAAATCTCTTTCACTCTCTTTAACCCCATTGGCTAGCTAGCTACTTTCTAAATCTGTTTTTTTTTTTTTGCCTTCTTCTTCTTCTCTCTCTCTAACTCGATTCCCACAAACCCTAATTTTCTCGGAACCTCTTCTTCGCGGGGGAGATTCGAATCTAGGTTTTAGCAATGGAATCAGATCAGGGAAAGCTCTTCATCGGCGGGATTTCATGGGACACCGACGAGAATCTCCTGAGAGAGTACTTCAGCAATTACGGAGAGGTTTTGCAGGTGACGGTGATGCGAGAGAAAGCTACAGGTCGTCCGAGAGGATTCGGATTCGTTTCCTTCTCCGATCCCGCCGTCATTGATAGGGTTCTTCAGAGCAAGCACCATATCGATAACAGAGATGTTGATGTGAGAGAGCAATGTCTAGAGAGAGCAGAGTCCTGTGTAGTAGACCAGGGGTAGTTTAATGCTGCGTCTAGGAGTTTGATAGTGGAGCTACGTGAGGACCAGAAGATATTCGTGGGAGGTTTGCCTCCTGCGTTGAA | |||||||||
gi|308714613|gb|DK468435.1|DK468435 DK468435 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAAGTACTCCCTTTCTGTCTGAGTAAGAGGAAACGAAAATGGATAGGGGTTCCAACTCGGGTCTTGGTCTTGGTCCAGGCCAGACAGAGTCGGGTGGTTCATCCACTGAGTCATCCTCTTTAAGTGGAGGGCTCATGTTTGGCCAGAGGATCTACTTCGAGGACGCTGGAGGTGGAACCGGGTTTTCTTCCTCCGGCGGGTCAAACAGAAGGGTACGTGGAAGCGGGTCGGGTCCTTCGGGTCAGATACCAAGATGTCAAGTGGAAGGTTGTGGAATGGATCTAACTAATGCAAAGGGTTATTACACGAGGCATAGAGTTTGTGGAATGCACTCTAAAACACCAAAAGTCATTGTCGCTGGTATAGAACAAAGGTTTTGTCAACAGTGCAGCAGGTTTCACCAGCTTCCGGAATTTGACCTAGAGAAAAGGAGTTGCCGTAGGAGACTCGCTGGTCATAATGAGAGACGGAGGAAGCCACAGCCTGCGTCTCTATCTGTGTTGTCTTCTCGTTATGGGAGGATCACTCCTTCTCTTTACGGAAATGGTGAAACTACAATGAATGGGAGCTTTCTTGGGTCTCAAGAAATGGGTTGGAATAGTGCAAGAACGTTGGATACAAGAGTGATGAGACGGCCACCGTCGTGGCAGATCAATCCTATGAATGTGTTTAGTCAAGGATCAGTAAGTGGAGGAGGAGGAGGAGGGATAAACTTCTCATCTCCGGAGATTATGGACACTAAACCAGAGAGCTACAAGGAATTGGCAGCGACTCAACTGTGCTCTCTCTCTTCTGTCAAACCCACATCAGCCACATGACAACAACAACAGCAA | |||||||||
gi|122030298|gb|EH419163.1|EH419163 OL3738R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CCGAGCCGCTCTCCGAAAGCATAATCGAACCTAGTCACAGATTATAAAAAAAAATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCAATTATGATCCTCGAGGACGAGGGTATTTCTATCACGTCCGACAAGATCGCTACTTTGGTCAAAGCAGCTGGCGTTGAGATTGAGTCATACTGGCCAATGCTATTCGCCAATATGGCTGAGAAACGTAACGTCACTGACCTCATCATGAACGTTGGTGCTGGTGGTGGAGGCGGTGCCCCTGTTGCTGCTGCTGCTCCAGCTGCCGGTGGTGGTGCCGCTGCTGCTGCACCTGCTTCTGAGGAGAAGAAGAAGGAGGAAGTGGCGGAAGAGAGTGATGGTGATTTGGGTTTCGGCTTGTTCGACTAAGCAGCCTGCAATTACTCTTTTTGCTTGTTCGTAGTTTGGTTTTTCATCAATTTGAGACCATTATTTTGTTGCATCATCCGAGTTTGTATTCTGCTGTATTAACTTATGTCTATCCAGTCGTCTCTGTCTTTTGTTAAAATGGATTTTGTTCTTCCTTC | |||||||||
gi|308716595|gb|DK491818.1|DK491818 DK491818 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GATGTTGCGTTTCATTGAAGCTTTCTTTTCTCTTTAGGTTTCACCAGCTTGCTGAGTTTGACTTGGAGAAAAGAAGTTGTAGAAGACGTCTAGCTTGTCATAACGAAAGAAGAAGAAAGCCCCAAGCAACAACAGCAGCTCTTTTGGCTTCTGGTTACTCTAGAATCGCTCCATCTCTTTACGGAAGCGTTTTGGGAGATCCTACAACGTGGTCAACCGCAAGATCTGTGATGGGACGGTCCGCACCGTGGGATAGCCATCAACTGATGAACGTTTTGTCACAGGGAAGTTCAAGGTTTAGTATAACATACCCAGAGATGGTGAACAATAATAGCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACTCAAACACAACTCAGCAGCAGCAGCAGACATCAACCAATGCTTACTTGATGGACGCAGAAAGGGTTACAATGGCTAAGTCACCGCCTGTTTCAGTACACAATCAGTACTCGAAACAAACCTGGGAGTTCATGTCAGGCGAAAAGAGCAATTGGCCTTGTGTGTCGTCCCCTGTTTTGGGACTGAGACAAATCTCTGAGCCAGATGATGATCTCCAGTTCCTGATGAGCAATGGCACCACAATGGGTGGATTCGAGCTGAACCTACAGCAGGAGCAGGTTCTGAGGCAATACTCTTCTACTCAAAATTTTACTTGGCCTCTTTGAGACTTTCTACCAAGAGCCCTTACCAGTAGAAAGTTGCTAGTTGCTACTAAGACTTGATAGTCTCAAGATCTTATTAAATTATATATTTTTCTATGCTACTTAAAACCAGACAATGGCCTTGAATCTGGATATTATTTTTAATGGTTTTGGCTCTTGATTTTAAGCCA | |||||||||