| mature miRNA: TTGACAGAAGATAGAGAGCAC species: Gossypium raimondii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48820033|gb|CO121346.1|CO121346 GR__Eb02H21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02H21 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTTCCAAGGCACCTCCTCGTCAGCAAGTGAAGACATCAATGTTTTCGATGCAGCATTGAGCATTCAGGGATTATCTGGGATTTCGGATTCTGTTTGTGCTCTCTCTCTTCTGTCATCTCAATCACACAGCTCTTCAAGCCACTCATCAGGAATTCCCATGGCCCGTTCCCTGGTTATTCCAGGCTACCATAACCATCACATGACTCAAGTCTCGGAAAAGCTCGACAGAGTGTTGAATACGATCTCTTCATCAGGGATCAATTCAACCGAAGGCAGTAACATGGGTGCTATACTGATATCTGATAGTAGTGAAGCTGCCAACTTCAATATCACTGATGGACTATCATGCAAAGATGGACCAACGATCAACTTGCTTCAGCTTTCATCGCAGCTTCAGCGAGTGGAACATCAAAGACAATCTATGCAAGAAGCCAATGAAAATGAGCCCTGCCTCCGAATCATTTAAGTACAGATTAAGACAAGTTCAATGTTGCTGAAAGCTGCACAGTTCTCGAGATGTCCAAATAGTCGGAGTAACATAGATGGAAGCATGATGAGAAAGTTCAGCAGCTGCTAACAGGATTCCCCCCCCCCCCCCTCGGTTAAGTTTCACCTAGACTTTTACAAGTTATTTTGTAATCGAAAAAAAAAATTGTTTGATTATGTTTCTCGAATTAAAAATGTTTTGATGAACAAAATTATCAACATTTCTGGAATTAAAAATGTTTTGATGACC | |||||||||
gi|48746369|gb|CO076888.1|CO076888 GR__Ea38G22.r GR__Ea Gossypium raimondii cDNA clone GR__Ea38G22 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TCATGAACTATCCATTACCAATTACAACTAAACCAAGTTGGATTTCTCAAGTCCCTGTTAAAACAATGAAATATTGATACCAAATCAAGACATATAAATATAAGTAAATATTTGTTGGCTTCGTAGTAGTTTACATGAAAAAAAAAGTTTGATAACCTTATTAAAGGTACTTTAAAGAATCTAGAATAATTATAGATATGTAAAACAACATAAAATCAAATCATCAATTACCACAAAAGAGCTTACCCTCAAACAATTTCAACCAAGTTTTGAAAGCCTAATGAACAAAAGCCTCCCTCCCTACCGAAGGAAATTATGATTCGAATTCAGGATATTCCTAGGAAAGGTGAACACCTTGCCAATATGCCACAACTTAGGGTTACTGCTCTAACTATATAGACACTAGTTTTCCTCATAAATGACACAACAGAGATGAAATTAAGAAGTGAGTTAGGAAAATTAGAGGTTGTGTTTAGCCTTTAGTGATGAACATAGCAAGAGAAAATTTATAATGAGTAAAGAATGAATGTTAGAAGTAAAAGGAAGAAAATAGGGTGAGAAGAAAAGGTAAGAGTGGCTTGAAGGTGATGACAGAAGCATAAAGAGCACAAAGGAGTGGGATGCATTGCTTCAAGACTCCTAATTGCACACCATCATCTGTGCTCTCTATCTTCTGTCAACAACAATCACCAATTGCCTCCTCGCTTTCCTCCCCGGCCCTTAGAGTCCCTACACCTACGCACTATTGTTTTAGTTAAAAATTCATTAGACCATAGGAAAGGAAGAAAAGGTTACTTTAAAAGGAAAGGTTGGCCTTAGGAGATGAAAAGTATAACTATTTAAGAAAG | |||||||||
gi|48752263|gb|CO082782.1|CO082782 GR__Ea47I22.r GR__Ea Gossypium raimondii cDNA clone GR__Ea47I22 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TCATATTTCATAAGATGGACATGAAAAATACTAAAAAAAATTAATTAGCGTTAATGCAGTAATTGCAATTCCATTTCCAAGCTTGAACTTTCAAGGGAGCGGTGGTAGTACTGAACATGGATCAATAAAAGTCTTCTTCTACGGAGCCGAAAAATGAATATGTCGGCTATATTTATACATGTTATGCTCTATTATACCATGGATAAAAACATAGAATTTTCCACAAGCAAGTGGTACCCTTGGATAAGGGGAATCACTTTAATGGTAATATCTAACAAGCATATAAAAGCATAGCATCCGAATTATTTTGACAAAAACATCACCAAGACTTATCCTCAAATTTGTGCGTAAGCTACCTGTATACGGAAGTCAAAAAAGACAAGATAAACAAAATTATACCAATCGATGTTGATGTTGGAACCTAACATGAACTTACATATGTTGAAGATCAAATTACATGACGAAGACCATCATCAATCTCTTAGTCCTGTAATAAATCTGTAAATTGCAAAAAAAAAAAAAGTAAACCACAAACAACAAAACCCATACATACACAGAAGAAATGTAATTCAACGGGTTTAGGGTTTAAAAGAGGGGCTATGAAAGGTGATGATGACAGAAGCATAGAGAGCACAAAGGAGTGGGATGCATGCACATAGGCAACACCATCATCTGTGCTCTCTATCTTCTGTCAACAACAATCACCAGTGCCTCCTCTTCAACCAACACCTCCCATATATACTATATAATATTATAATTATATATATGCTCCTTGAACTAATGTTTTCTCATCAAAAGAATCATTATAAAAAAGACCATAAATGTTACTTTAATAGGAAAATGTTCCCTAAAGAATGAAGTGAGAGAGTGAGAAAACATATAGGAAGTAGG | |||||||||