| mature miRNA: TTGACAGAAGATAGAGAGCAC species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|51455574|gb|CV017222.1|CV017222 tbt_004734 Normalized Nicotiana tabacum cDNA library Nicotiana tabacum cDNA clone tbt_004734 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACATCTACTTATAACTACTAAAGTTGATAGTTATATCAACTCATTAGATTTTAGACTCTTAGAAATGGCTTCTAAGAAAACTACTTCTCTTGCTCTCTTTCTTCTGTCAACCTTCTCTTTTTCTCCCTTGTGAGTGCATGTGGCACTTGCCCAAGTCCTAAACCAAAACCAAAACCAAGTCCTAGCCCATCCAAAGGCAAGTGCCCAATTGATACTCTAAAATTAGGTGTTTGTGCTAATGTTTTAGGCAATTTGCTTGGACTTGTGATTGGTAATCCTCCAAAGAAACCTTGTTGCACTCTCATTCAAGGTGTTGCTGACCTTGAGGCTGCTATTTGTCTATGCAC | |||||||||
gi|94330117|gb|EB683719.1|EB683719 KR3B.113F06F.060119T7 KR3B Nicotiana tabacum cDNA clone KR3B.113F06, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCCTCTGTATCATTGAGAGAGAAAGCTAGAGAGAAACAAAGAGAGAAAAAATGGGAGTTTTCACATTCGTTTGCAAAGGTTCAGGAGATGAATGGAGTGCTAAGCAACTGAAGGGTGATCTAGAAGCGTCTGCTTCTTGCACCTATGATCTTCAGCGCAAGCTTGTTCAAGCTGCTCTTTCCACTGACTCTTCTGGTGGCGTTCAGTCCTCTTTCTCCTACGTTACCCCTTCCTCCGCTGTCTTTCAGGTGATCATTGGTGGCGGTGGGGGCGGTGGCTTCATTGGAAGCGGTGCTGCAGCAGCAGCGGCTCCTTCTGGTGGTGCAGCAGCTGCAGAAGCACCTGCAGCTGAGGAAAAGAAGGAAGAGAAAGAAGAGAGTGATGATGATGACTTGGGATTTTCACTCTTTGACTAAATTGGTTATATAGTAGTACAATTTTCAGTTGCTCTGCATCTTCTGTCAGTGTCACTATGTTGGCCCTAAATTTTTTATAAGCATTGGATTTATCAGTTGTTGCTAGTCATCTAATCTAGTGACATTGTGCTCTATGG | |||||||||
gi|190861693|gb|FG151964.1|FG151964 AGN_RNC109xn13r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TCCAAAGCCTTGAAAGAGCTGCAGTACAAATGGCTGTCATTATTGCCAGGGATCCAGTTGTCACGGGCCGTGGGTGCACACAGTAATGTATCTAGCTGCTTGCTCTTGCCCTCCAAGGGCCACACATCCGAGGTTTTCAATCGAGGTGCCACGGAATCCATGTTCAATATGGGTACAGGACGGGAATTTCCTCGTGCTCTCTCTCTTCTGTCAACTAATTCATGGGGTTCATCCGAGCCTGAGACTGTTTCACTGAACAACCCAACACACGCGAATCAGAGCAGCATGCCCGAGCAGATGATGCAGGCAATTCCACAAGGTGTGCCACTTATGTCCTGTGAATACTGGCAGGGTGAACAACCCTCATCCGATCCTCGTGACCATACATTGGCTGCTAATAGTCATGCTGGTGGTAGCTTTCAGGGAATCGAGCTGTTCAAACCTCCATTTGACACTGACTTTTATCTCAATGCATTGAACTGAAGCCAACATTTGATGCCTTTAGTGGATTTTGGCCAGCTCCTGTTTTCGCTTTTTGACTCGAACTTGGATCAAACAGGAGGTTTATTAGTAGGCTATTTGAAGCAGTTTGTTTGCCATTTTAAATTAGTACTGGTATATATAATATATATATATATATATATATATATAGGTTGGGCTTTGAAACTCCAAGAAAGTTTGCTTGATTTAGGCAGTGACAAGGGTTTTTAAGAATTGTAGTTTCTTTATTTTGCAACAACTGCACAGGCCCCGAATGATTGTTTTTCCTTTTTCACCATTT | |||||||||
gi|254628464|gb|FS415621.1|FS415621 FS415621 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR004 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGTTTTTATCTTCTGTCAGGGCAAGTGATTCCGGCACACTCACAGATCTGTCCGCCGTTGCCGAACACTCAGAGATCTGTGAAGATGTACACGTCAAGGCAAAAGATTCACAAAGACAAAGATGCTGAACCTTCTGAATTTGAGGAGTCCGTTGCACAGGCTTTGTTTGACTTGGAAAACACCAACCAAGAGCTGAAAAGTGAATTGAAGGATCTATACATCAATTCAGCAGCTCAAATTGATGTGTCTGGAAGTAGGAAAGCTGTTGTTATTCACGTGCCATACAGACTGAGGAAAGCTTTCCGCAAGGTTCATGTCCGGCTTGTTAGGGAGTTGGAGAAGAAATTCAGTGGAAAGGATGTGATCTTCATTGCCACAAGGAGGATAGTTAGGCCCCCCAAGAGAGGCTCTGCTGCCCAGCGACCACGCAGCAGGACTCTTACTTCTGTTCACGATGCTATATTGGAGGACTTGGTTGTACCAGCTGAGATTGTTGGGAAGCGAACTAGATATCGTATTGATGGATCCAAGATAATGAAGGTCTTCTTGGACCCCAAGGAGCGCAACAACACCGAGTACA | |||||||||
gi|190137415|gb|FG635584.1|FG635584 TT-04_M11 Samsun trichome library Nicotiana tabacum cDNA, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATCACAATTTCCTCCATTAATTCTTCGTCTCTTTATCAACTTTTTAAATGGAAGCAGCTGATAATAATGACTTGTTCATTTTTGCCACTGATAATGACGACAAGAAGAAGAGAACCCCCAGTTATAATAATAGGAGTAGTAGTAGTAGTAATAATAACAATGAAAAGATCAAAGGGTCAAGTACTTCAATGAGGTGTTGCCAAGCTGATAAGTGTACTGTTGATTTAAGTGACGCCAAACAATACCATAAGAGGCATAAAGTCTGTGAATACCATGCAAAGGCTCAAGCCGTCGTCGTCGCCGGACTCCGGCAACGCTTTTGTCAACAATGCAGCCGATTTCACGAGGTAGGAGAGTTTGATGAATCGAAAAGGAGTTGCAGAAGGCGTTTGGCTGGGCACAACGAAAGGCGAAGGAAGACTACTACTACTTCTTCATCATCAGATCAGTCTAATGCTGAAGTTTCATCGAGTAGAAAAGCCATAATAGGGACAGACACTCATCAGATAATAAACTTCCAAGAAAATGCAGCAGCAGGTTATAAACACTTTCAGATTGGATGAAAAACTGAGGCAAAAAAATGGATACGATATGCTTGCTCTCTCTCTTCTGTCATTCTCTAATAAGTTCAGTTACTATAATAATTATCAGTTCGCTGTTTGTGACTTTTATAATCATGAAGTTTGAAGTCTTGAACATATTATTAAATCCAAGATCCTCAGTGGTAGTTTTGTACCACTTTATCAAAAATAAATAATGATCTATGGATGTTATTGTATAATTAAACAGCCTCTCTATCTTC | |||||||||
gi|156658313|gb|AM829237.1|AM829237 AM829237 DL, diurnal library Nicotiana tabacum cDNA clone nt005059071, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CATGCGGCCGCTGGACAACCTGCTGTAACAACGAGCAGTATTAACGAGAGTGCCATCTCATCTATGCATGATATGCGAGGATCAGATTTTGTTTCCCCTTCTTTGTTCCACACCAGCTCAACTGGATCTGAAGTCTTGCATGTTTTGGACACATCTTCTACTATTCATGGGCTATCAGGGATATCGAACTCCAGCAATGCTCTCTCTCTTCTGTCATCCCAATCACGGGGCTCGTCAAATCATTCCACTGTTTTTCGTGCCGCTCATCC | |||||||||
gi|190774487|gb|FG173957.1|FG173957 AGN_RNC125xd10f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTAAACTCCACAGAAAGAAAGAATTTATGTTATCTAGGTGCTAGGTACAAAATCTTGGCGGAGTTCTCAATCTGTTTCCTATATAGTTAATAGCTTACTAATTTGACAACAACAACAAGTTCTATTATTTTTAGAATTTTTTTAGGCCTTAACCTTTGATAAAAAATTTCAGGGGTTTTGGTTTTACTCCTAAATATGGCAGTAGTGGGAGATTTAGCTTTGATGGGGACTAAGATCAGTCCAAACAAGTTAATTAGTAAATTGGAGAAAAGGGTGTTTGGTGTTCCAGTTTCTTCAAGTCAAAGGTTTAGTTTTTCTCATGCTAGAAATTTGGAAGTTATAAAAAAATCAAGAATTGCTGTCAAAGCAGTGATGCAAGTGGGGTTGGAGAAAATTCAAAGTTCAAGTGAATTGAAGAGTTTAAAAGAAGAGTATTTAGGCTTTGATGTGGTGACAGAAAGGGAACTAAAGGAAAATGGATTTTTGGGGTTAAGGAAAACAAAGTTAGTTTGCACAATTGGACCAGCTTGTTGTTCTTTGGATGAGTTGGAGAAGTTGGCTTTGGCAGGTATGAATGTGGCTAGGCTAAATATGTGTCATAATTCAAGGGAATGGCATCAAGATGTGATTAGGAAAATTAAGATGTTGAATCAAGAAAAAGGTTATAGTGTATCAGTCATGATTGATACAGAGGGGAATCAAATACAGGTGGTTGATCATGGCTCTTCATCTTCTGTCAAAGCAGAGGAGGATTCAATCTGGTACTTTACTACTGAGAGTTTGAGTCTCGTCGTTTACAATCAGCAAATATGAGTTTTCTGAGTGTCA | |||||||||
gi|92028761|gb|EB440466.1|EB440466 KN6B.106F23F.060104T7 KN6B Nicotiana tabacum cDNA clone KN6B.106F23, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GTGTTTTCTCTCTTGTGTCAGTTTCTGCTTAGCTTCTCAAAATCTGCTGTCCCTTCAAAATTCCTCTTTCTGTTTTCTGCTTTTTTCCTATCTTCAGTTCTTTTTGCTTATTATAAGCATAATTTACTTTAGTTGTGTTCAAAAAAAATTGTTCCCGTGATTTCAGAGCTTTTTGCAGTGTAATACTTTCTGAATTATTGTCAGAAAAACATGAATGTGTGATTAGTTATTCTTGGAGATTACACAACTAGCACAATTTCAAGAATGGCCTGTTTTTCTTCACTATTTGCATTACTGTAGTTTACATGCTCAAGAAAAGCTGGAGTCTTTTGTATCTCTTCTAATGGCAAACTATATACAAGACGCAAGTGGGTTTTGAATGATTTTTTTGGCATAGTAAAAGGAAAATGACATTAAAATCAAAGAAAGGATGGAAATCAGTAGTGCCCCTCCGTTTGAAGACCAAATCATCAGCAAATTTTTGTTTGCTCCCCAGAGTGAAGTCAGATCGTTTTGGTCCTGGTGAGACGCCAGTGTGTCTCAACGTGTATGACTTGACCCCTATGAATAACTATGTCTATTGGGCTGGCTTTGGTATCTTTCATTCTGGTGTGGAAGTTCATGGTGTAGAATACGCATTTGGAGCTCATGACTACCCGACCAGCGGTGTCTTTGAAGTTGAACCGCGGCAATGTCCA | |||||||||
gi|156644086|gb|AM783587.1|AM783587 AM783587 COL, cold overnight library Nicotiana tabacum cDNA clone nt006014010, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AATGGCCTCCTTCTCCAATCTAAAACTACTGCAGATTCTACCCGGGGAACCTCTGAAGTTCCCAAGTTCACAATAACAAGAGGGTTAACTTCAAAGCCTTACAAAGCTGGCAGTATTAATGTGCGGTCACTTGTGGGGGAAATCAAGCTTCCAGGGGCAACTAAAATGCAGACTGATGCATCCAAGGGCACCACCACCGAGGTCTTCAGCCAAGGTGTGAAGGAGAACATGTTGTCTCTCAATATGGGTGCGGAACCAGAATTACCTCGTGCTCTCTCTCTTCTGTCAAATAAATCTTCATCCGAGCCTGAATCTACTTCAATTGGCCACCCCACACATGTAAATTCAATTGGCCACCCCACACATGTAAACCAGATCAGCATAACGGAGCAGCAGGTGATTCTTGAGAATTCGCCACTTGGGTCCACTGAACACTGGCAGGCCGAGCAATATCTACTCAATCCACGCATCCATGCTTTGGTTGCTAATGGTCATAGTGGTGGT | |||||||||
gi|254626623|gb|FS402309.1|FS402309 FS402309 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR000 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GGGGTTTTTATCTTCTGTCAGAGCAAGTGATTCCGGCACACTCACAGATCTGTCCGCCGTTGCCGAACACTCAGAGATCTGTGAAGATGTACACGTCAAGGCAAAAGATTCACAAAGACAAAGATGCTGAACCTTCTGAATTTGAGGAGTCCGTTGCACAGGCTTTGTTTGACTTGGAAAACACCAACCAAGAGCTGAAAAGTGAATTGAAGGATCTATACATCAATTCAGCAGCTCAAATTGATGTATCAGGAAATAGGAAAGCTGTTGTCATTCACGTGCCATATAGACTGAGAAAAGCTTTCCGCAAGGTCCATGTCCGTCTTGTTAGGGAGCTGGAGAAGAAATTCAGTGGAAAGGATGTAATCTTCATTGCCACCAGGAGGATAGTGAGGCCCCCTAAGAGAGGCTCTGCTGCCCAGAGACCCCGCAGCAGGACTCTTACTTCTGTTCACGATGCTATATTGGAGGACTTGGTTGTACCAGCTGAGATTGTTGGGAAGCGAACTAGATATCGCATTGATGGATCCAAGATAATGAAGGTCTTCTTGGACCCCAAGGAGCGCAACAACACCGAGTACAAGCTGGAGACCTTTTCTGCAGTT | |||||||||
gi|254639759|gb|FS411996.1|FS411996 FS411996 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR003 TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GAAAGAAGTGAGAGAAACTGAAAAAAAGAGAGAAAAAGAGTGTGTGTCTGTGTGTTTTCTCTCTTGTGTCAGTTTCTGCTTAGCTTCTCAAAATCTGTTGTCCCTTCAAAATTCCTCTTCTGTTTTCTGCTTTTTTCCTATCTTCAGCTCTTTTTGCTTATTATAAGCATAATTTACTTTAGTTGTGTTCAAACAAAATTGTTCCCGTGATTTCAGAGCTTTTTGCAGTGTAATATTTTCTGGTATTGTCAGAAAAAATGAATGTGTGATTAATTATTCTTGGAGATTACAGAACTAGCACAATTTCAAGAATGGCCTGTTTTTATTCACTATTTGCATTACTATAGTTTACATGCTCAAAAAAAGCTCAAAGCTGGAGTCTTTTGTATCTCTTCTAATGGCAAACTATATTCAAGACGGCAGTGGGTTTTGAGTGATTTTTTATTGCATAGTAAAAGGAAAATGACATTAAAATCAAAGAAAGGATGGAAATCAGTAGTGCCCCTCCGTTTGAAGACCAAATCATCAGCAAATTTTTGTTTGCTCCCCAGAGTGAAGTCGGATCGTTTTGGTCCTGGTGAGACACCAGTTTGTCTCAACGTGTATGACTTGACACCTATTAATAACTATGTCTATTGGGCTGGCTTTGGTATCTTCCATTCTGGTG | |||||||||
gi|190872059|gb|FG164766.1|FG164766 AGN_RNC012xi20r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTCAGCTGATCTATGCAAACTCTGATACTTTTACTGCAGCAGTCTTTCATTAGCAGTCACAAATTTTTCCAAGTGCAGTGTGAGCTCTGCATGGGCTGGCGTAGTCAAAACGGACAGCGACATGGTATTATACAACAATATAAATTGCATGGACAATCAAAACTCGTTCCTGATTCTTCGGCTCGTAGTAGCTACAAAGGAGGAAATCAATTCCAGTTCATGCAAGGCAGTGAGCGTAGTCTCCCTGAAGCTTCAATCTGCCAGCCACTTGTTGATCATCCCAATTCTACAGCAGCAGTTCCTAGCAGCGGACAAAAGATCTTCTCCAGTGGATTGAACGAAATTGTGGACTCTGATCGTGCTCTCTCTCTTCTGTCATCAGCACCCGCTGTAACTAGGGAGATTGGTTTTAGTCACATGGTGCAGCAGCCTGCCTCTATCCCCCGGCCCCGGCCCCAGTCACAATCTGTCGTACATAGCCTGCACTATGGTGGTCTAAGCCAGTACCCTTTTGCTCAGGATTTCAATAGCCAACCTCAAGATTCTGCTGCAGATTCACATGTTAGCAACAGCAGCTCTCTGCATTTCCATGATATGTTACAAAATGCACCAGATGGATCATCTACAAGTGGTGGCTGTCAGCAAACACTAGCCTTTATGTGGGACTAAATAAAATCAAAATTTGGTCTCTGTTAACATCAAGAAAATTCCTTCCAAGCAAATGTTATTCCGATTAAGAATGTTTAGCTTCTAATTAGCGACATAATTTCTTCTCTAAAATGTCGTAAGATCCTATCATGAAGTTAT | |||||||||
gi|92038731|gb|EB450436.1|EB450436 KT7C.106L15F.051219T7 KT7 Nicotiana tabacum cDNA clone KT7C.106L15, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CACAAAAGAATGAAGACGTGGTCCTTAAACGTCACTCTCTAACTTTTCCTCTTCTTTTCTCACAAAATTCCCACTTCATATCATCATCTTCATCCTTTGTTCTTCTTCTTTTCTTCAATTCCTCTTCCACTTTAGTTTTTAATATGGAAACAGCTGGTCATCATAATATTTCTACTAGTGAAGATGATTATAAGAAGAAGAGAGGCAGTTGCAATAATAATATTACAACAAATAATAACCATATTAAGAAAGGGTCATTAAATAATGGAGGGTCAAGTACTACTCAAAGGTGTTGTCAAGCTGAGAAGTGCAGTGCTGATTTAAGTGATGCTAAGCAGTACCATAGGAGGCATAAAGTCTGTGAATACCATGCAAAGGCTCAAGTCGTCGTCGTCGCCGGATTCCGGCAACGCTTCTGTCAACAATGCAGCCGATTTCATGAGTTGACGGAATTTGATGAATCGAAAAGGAGTTGCCGAAGGCGTTTGGCTGGACACAACGAAAGGCGAAGAAAGAGCTCATCATCAACTGCAGAGTCACATAATATTGCAGAAAGTTCAAGCAGAAAAGGGACAGTGCAACTCAATAATAAGGACATTAACATGATATGTGGTCAAGTAAATGACAAGGGAAGAATTCAGATTTCAATTCAAGAAAATTCCACTTTCAAAAACTTCCACCTCCGTTGAAGAAATGCCTGCATATTAATTAATTGCTCTCTCTCTTCTGTCATTCTCTCCAAGTTCTATTCCTGAAATAATCATCACTCACACGGCCATTAGTACTACTGGCTTTATCTGCACTAGAAACAGACTATCAATTATTATGATGATGTATTAGATAGTACTATTAAGAAAAAGCCA | |||||||||
gi|52831479|gb|BP527752.1|BP527752 BP527752 MAT001 Nicotiana tabacum cDNA clone BY12562, mRNA sequence TTGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAAGAAGCAAAAATAATGTGAGTAGCAACTCATATCTAAATGATATTGAAGGATCAGATTTTGTTTCCCGTTCTCTGTTCCACAGCACCTCAATTGGGAGCGAAGTCTTGAATGTTATGGATTTGGCCTCAACTTTTCAAGGGATATCAAGTTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAGGCTCGTCAAATTACTCATCTGTAGTTCCTAATTCTCACCACCTTATTGCACCTAGCGATAATGCCCATTACAATGTGACACAGACATCTGAAAAGTTCCCAGGGATGAGCCAGAAGGATTCAACAAGTAATGCGTCCGGTATATTCAATATATCCGGAGCAATTTCTGCAGAGGGTCGCTTGGAACAGATACTAAGAAACAACTGTGGCATCAACGGGAGTATTCA | |||||||||