| mature miRNA: TTGACAGAAGATAGAGAGCAT species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74391045|gb|CJ745865.1|CJ745865 CJ745865 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf32p02 5', mRNA sequ TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGAGGCGGCGGCTGCTTCTGAAGTAAGTAAACTTCACAGTTCACAGAGCTCTTCCTTTCTTTCTTCTGTCAATGGAAATTCACAAGAGTTCATCTGATGATGGTGATGTTTCATTGAATCTGGAGCTTCCAACAAATGACCTCTGGTTCAAGAAAAAGAAGAAACTACTGGAGGACATGGGTTCTAATCCATTGGGACCTTTGCACGTACAAAGTTTTGCTACTGCTGATCAGCTAAAAACAGCATTCACTTTAATACTTCAACAAGCTAGAATCATAAACTTAGATGAGCTAGAGCTTTATTTTGGTGGTGATGATGCCAATAATCTGGTTGGTTTCAATAGTCCAAGGAATGAGCTAGAAGCTCTTCATTCAGTCCTTGCAGCCATTGATCAGGCATTTCCCAGCAGTAAAGATGCTAATGTGGTTGCATTGCAAGATCTACGCCAAAAAACTGTTGATTTGATCAGCGAATTCTCCAATAGAATCAAAGAGGACACTAAAATTTGTGCAGAGTGTACAATTGAAAAGGAAAACTCTTTGTTACAGTGGGCTGAAAGCAATGGTGTGAAGTCAAAGTTGAGGATAGCTTATGTTGAAGGAGCTGGAAGAGGGGNCCATAGCAACACAAGATCTGAAAGTTGGAGACATTGCACTGGAGGTCCCTATATCTGTTATCATTTCTGAGAACCTTGTACAGGAATCTGACATGTATTCTATTTT | |||||||||
gi|27244820|gb|BJ563000.1|BJ563000 BJ563000 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm38k23 5', mRNA TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): CTGTTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGTCAATTGCTAGA | |||||||||
gi|27250005|gb|BJ568177.1|BJ568177 BJ568177 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm1j12 3', mRNA TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GAGAGTAGTAATTCGTATCTACACGAAATGGCGGGGCAAGATTTCGTTCCACGGGCTGTCTATCATCATAGCACGACGTTGGGTAGTGAAGTTCTGAGCTGTTCTATTCAGGGCCTGTCTGGGATATCGAATTCTGGGCGTGCTCTCTCTCTTCTGTCATCCCACTCGCAGACTTCCGGGGCTCATTCCCTTATCAATCCGGGGACTAATGAACATTATGATATGGCACAAGTATCTGAGAAGTTGTTGGGGGTTAGTCCACCTGCCTCAACAACCGCTTTGTCTCCATCTGAGGATGCTCGCTTGCAACAGATGATGCTGTTTTCTAACGCTGCTCAGACGTATGCAATCAACCCGATTGTTCAAGGATCGGGATATGTGAATGTGAAGAACCAAATTTCTGGCGAAGAACAACATGGCCCTACTATCGATTTGCTTCAGCTCTCATCACAGCTTCAAAGAGTGGAGCACGAAAGGCACTCGGTGCAAGTGAAGCAAGAAAGTGGCGCTTTCTCTGGCCTTAGAATCACCTGACTGCTAGCTAGCTATCGATCTGAGAATCTATCGAGGAAGCACAAAGAAGCCAGGAAACGTTTGTGGTGTTGATTCTTTTCGTTTACTTTTTTCGTGTGCTGCTGACAATGCAACTACTGTTCTTTCAAACTTCTTCTTCTGCTTTCATATGCAAATCATTGGTTTCTCTGATGCTTAAT | |||||||||
gi|74409400|gb|CJ764220.1|CJ764220 CJ764220 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf32o02 3', mRNA sequ TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): CTCTTCTCCTGCTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGTCAATTGCTAGACTTCAATTACAAATCATTGCCTCTATGTGTGGTTTGTAATTCATTCAGCCTCCATCCCCTCTCCCAGTGGGAGGGTGATTCAGGGGAGCATTATCATTTGGATGAAGTTTCCTATATCTTATTATCATTGAGGCTG | |||||||||
gi|27238212|gb|BJ556392.1|BJ556392 BJ556392 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm1b20 5', mRNA TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): CTGTTTGAGTTACTTCTTCCCAACTTCTTTTACCATCAAAGAAATGGAAACAAGCAAACCAGAGGGGAAAAGAAGCATAAATGAAACTGACTCGGTGGCAGAGGGGGGAGAAGATGAAGACGAAGATGTTGAAGAAGACAACAAAAAGAAAAGAGCATTGACTCTATCTGGAAGGAAGTTAACTGGTGGAGGGTCAACACAGCTGTTCTGTCAGGTGGAAGACTGCACCACAGATATGACAGATGCCAAGCCATACCATCGCCGCCACAAGGTCTGTGAGATTCACGCAAAGGCTCCGTCAGTACTTATAAATGGAGTCCAACAGCGCTTCTGTCAGCAATGCAGCAGGTTTCATGAATTAGCCCAGTTTGATGAAGCTAAGAGGAGTTGCCGGAGGCGATTGGCAGGTCACAATGAGCGCCGCAGGAGAATTACATATGATCCTCGTGGTGAAGGGTCAACCTGAAGACGTAATACCAGTGGGGGGACAAACCAACTCCTTATTGGAACTCATAAGAAGATTGGTCTCTGAACCACATAGCTTATCAATGTAATTTCTAGCATGCTCTCTATCTTCTGTCAATTGCTAGAC | |||||||||
gi|74387298|gb|CJ742118.1|CJ742118 CJ742118 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf23h20 5', mRNA sequ TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGTTTTTTAGGCAACGGACAACCGCCGTTTATTTCTGCCAAAACAACCAAACTAATGTCACATATCTCTCCCATCATGCTTTCCAGATCGCTCATGGGGATCTGTACTCTTTCTTCCACTCACTCACCCAATCCTTATTAGACCTTCTTTTGCTTCCTAATTTCTCCAACAATCATCGCTTTGCTCTTTCACTCTTTTCTCTTTCATGGATTCTCTGCGTGCATTGCACAACGCTAAATATGCATACCCATACCGCCATATTCCGAGCGCCAGGCGCACAAGTCTGGGAAAACTGAAATTCAGTGAGCCCAGATTGATATTGGAGCCCCAAGGGATTCCGGGCTCCATAATGAACCGACCAACAAGAGGACTTTCCTCTCGAACAATATGCGCTGTATCTTCTGTTGAAACCAGGGAGGTAGAGAAGAAAGGAAAGGAAAAAAGATCAGCTCATGAAAATTTGAAGCTGAAGATTTGGCTTGATCACCAAGTTGAATACGGTGAGCACATTGCGATTATGGGATCAACAAAAGAACTGGGGTCATGGAAGAAGAATGTGATGATGGACTGGACAGAAAAAGGTTGGGTTTCGGAAATGGAATTAAAGGGGGGTGAG | |||||||||
gi|74388604|gb|CJ743424.1|CJ743424 CJ743424 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf27b13 5', mRNA sequ TTGACAGAAGA-TAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGAACCATCCATAGCTTCTAGCAGCATACATATAGACAGTGCAAAAATAGCTAATACAGGAAAAAACTCATCAACTTTATTCACTATTCTTTCTATATATATATTTGTCAATCTCTCTAGCAGGGTGAAGAGACAGCGTGGTGATGAGTTGACAGAAGATAGAGAGCACAGATGATGAGGTACACCGTCCGGTGGCCGGAGCTGAGGATGCATGAATGTGATCGGAGAATTGTTAGTATATATATTGTGTGTATCTTCTTCTTTGTGCTCTCTACTCTTCTGTCATCACCGCCGGATTCTCTTCACTCCATGTATGTAGCACTTGCCCATTTCCTACTTTCTGCTTTCTTTAATTTGCGATTTTAATTGTTCATAATTTATCATCATTTACTGCATGTGACCGAGTGCAATGCATGGATGATGCAAAATTAGCTGGTTTTTGTAGTAGATATATAATTACTTGCTTACAGAAAGTGAAACTCCCTCGCCTGATCTACAGGGCCCCATGACTCAGCAGGGCAGAGACCCATTAAGTGAAAGGACTAGTACTGCGGTCTGCTGAGCGTTCATAACCAACCTACCACATTGGGTGAAATTCTCACATTGTCCCTACCGGGGCTTANGTTTATGTTCTTGTCTACACTCTACCACTCTAGAACGAACCAATTGAAATGTCGATGTAGACATCGGTGTGTANTGTANGTAGAGAAAGAAGGGGCTGGCTGTATGGACATGGTGGTTGACAGAAGATAGAGAGCNCGATGATGA | |||||||||
gi|74397709|gb|CJ752529.1|CJ752529 CJ752529 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf7j10 5', mRNA seque TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GAGGCAACGGACAACCGCCGTTTATTTCTGCCAAAACAACCAAACTAATGTCACATATCTCTCCCATCATGCTTTCCAGATCGCTCATGGGGATCTGTACTCTTTCTTCCACTCACTCACCCAATCCTTATTAGACCTTCTTTTGCTTCCTAATTTCTCCAACAATCATCGCTTTGCTCTTTCACTCTTTTCTCTTTCATGGATTCTCTGCGTGCATTGCACAACGCTAAATATGCATACCCATACCGCCATATTCCGAGCGCCAGGCGCACAAGTCTGGGAAAACTGAAATTCAGTGAGCCCAGATTGATATTGGAGCCCCAAGGGATTCCGGGCTCCATAATGAACCGACCAACAAGAGGACTTTCCTCTCGAACAATATGCGCTGTATCTTCTGTTGA | |||||||||
gi|74382889|gb|CJ737709.1|CJ737709 CJ737709 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf11p23 5', mRNA sequ TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGGTGCTTTTTTTCTTCTGTTGAAGTTTGGGTTTATTTGAGTTGCGATGGAGGAAAAGTATGAGCCATTGAAGGAGCTTGGTTCTGGGAATTTTGGAGTGGCTAGGCTGGTAAAAGACAAGAAGACCAAGGAACTTTTTGCTGTCAAGTATATAGAAAGAGGGAAAAAGATTGATGAGAATGTACAAAGGGAAATTATAAATCATAAGTCACTGAGGCATCCAAATATCATCAGGTTTAAGGAGGTTTTGTTGACTCCATCACATTTAGCTATTGTTATGGAGTATGCAGCC | |||||||||
gi|27244008|gb|BJ562188.1|BJ562188 BJ562188 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm36c13 5', mRNA TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): TCACGGAGAGAGGAAGGCATCCAAGCTTTGGTGGTTCTTGCACGGAACACATTCACCTATATCGCTTCTTCAATCTTCCTTCCTTCCCTTGCCTTTTGCCATAATTTATTCTCGTTTTCTCTCTAAGCATCCATTTCCTTTCCTATAAAATCTCCTTTGCCGTTGTGACCCTTGCTCCCTCTGCGAATTTTGTTTCTGGGAACTTGCTCTCGCATTTTGTGTCCCACCAATGATGTTCATACTCTAAAAGCTCTTTGAAGCAGGACATTGCTGATTTTTCCTACAATTGGGTGTATTTGATTGTTGGTGAAAGCGAATGCTATTTGTCTTCTGTTGAGTTTTTCTAGTGCTTTTTCAGTCCAGATTGCATAATGCCTTCCCAGATGATGGACCCACAGGATTTGTCTCCGTCCTTCTTTTCTGAGGACTTGCGTTTTCATGATGAGAGCCAGAATGGGTATTGGAAGTCAAATAGCCTGCATAATTTCAATGGTCTGAAAACAGACAGAACATTCAG | |||||||||
gi|27258032|gb|BJ576204.1|BJ576204 BJ576204 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm32f11 3', mRNA TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): TGGTCATAATGAGCGTCGTAGGAAGCCCCCACTTGGATCCATATTGTCCACACATTATGGGACTCTTTCTTCTTCAATGTTTGGAAACAATGGCCACTTTGTGATGGATTTCGCCTCATACCCATATCCGGGTGGTAAGGGCTCATGGCGGCCAAGTACCAATGGCGTGGGGAACTTTCTTCAACAACCATGGCAGAGAAACTCTGAAGATCCCCCACCCAAGCTTCTTTTGCTAGGTTCGGATGCTGCTGCTAGGGCTACTTATCCCAGTCCTTGTGGAGAATACTTCAATGGGGTCTCGGATTCCACCCGTGCTCTCTCTCTTCTGTCAAACTCAAATCAGCCCTGGGGCTCGAGAAACCAACAACCCTCTGGTCTCGGGGTTAATAGCTTACTTAACACTGATGGAACGCTTGCTGTTCATCCATCCGGTTCCCATGCTGCCGTTATCAATGAATTTTCTTCAAGTCCATGGGGTTTTAAAGGCAATCAAGCCACTACCAGCTCAGATAAGATCCTTCCTGATAGTCACTATTCTGGTGAGCTCGAGATGATGGCTCATCAACAAACTGGACGAGCATACATGGGAATGGAGTACTCGACGGGTTATGATTCTTCTGTCCAGAATGTGCACTGGACTCTCTGAATGTTGTTTGAAACACAAGTGTGTTACAAAAGTTTCATCTTTTGTTATGTTGTTAGATACTTGCATTTGCTATTCTGGAGTGTTATTTTGTGCTCTTCTAAGATGACTTTATCTTCCTCTGACTTTCATGAAGCACTAAATAAAGTG | |||||||||