| mature miRNA: TTGAGCCGCGCCAATATCAC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164258557|gb|ES822840.1|ES822840 UFL_246_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): GGCACGAGGATATTGGCGCGGCTCAATCACCAGGTCTCCCCTGGTAGGTATGCCCCTCCAAAGGGCTGCTTTCTACTTCAAGGGAGGCTTTACAAGTACTCCTCCTCATGAATAACCCAGTCTCTCCCCCGCCTCCAAGGAGCCCCACCGCTTTCGATGTTATCTTCAAAATGGGGGCTTACAAGGTCTTCTCTGAAGTTTCTCCGCTCATCCAATTCGTTAATTTTACTTGCAATCAGGCTATCCTTGAAGCTCTTGATGATACTGATCGGATTCACATTGTGGACTTTGATATTGGTTTTGGTGCTCAATGGGCTTCCTTTATGCAGGAGCTTCCCATGAGGAGTAGAGGAGCTCCCTCATTGAGAATTACTGCCTTTGCCTCCCCTTCAACGCACCATTCTATTGAGCTTGGGCTTATGCGTGATATTCTTATGCAATTTGCTAATGAAATTGGTCTAAGTTTTGAGCTTGAGGTGGTTAATTTCGATTCTTTAGATCAGAACCCTCATTCTTTGCCAATGTTTCAATCAAATGGAAATGAGGCAATTGCTGTGAATTTCCCTCGTTGGTCTTGTTCGAATCGGCCCTCTGCTTTGCCCCATCTTATGCGCTTTGTGAAGCAGCTTTCACCATAAATTGTGGTGTCTTTAGACCAAGGGTGTGATAGAAATGATCTGACATTCCCACAACATGTGATCCATGCCTTCCAGTCATATACAAACCTATTAGAATCACTTGATGCTGTTAATGCGACATCTGATGCTGTGAACAAGAATGAGAGGTTCTTTTTGTACCAGAAATGAAACAGCGTGCTGGG | |||||||||
gi|78349823|gb|DT570097.1|DT570097 EST1080737 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): TGGTGACGCAGGTGACCATTCCTTTGGCATCAAACAGCTGCTCCAGAGTGGGAGTACTGGTCCTAATCAGGGTCATGATTTTGATGGCAATGCAGGGTCGTGGGTTGTTGACCCAAGTCCAGGGTTTGAACCAATTGGTAGCCTTGCTACTTCCGGTAATGTGTTATCAAGCGCTGCTCCTATTTTGGGTGGTTTTCCTGATTCTGGGTTTGTGCCAAATCCCAACAATAATGATAATGGGAAGGTTGGTGTAGCGACGCCAAGTTGTTCTTCAGTTGAGGGGGTTAATAATCACAAGGTTCTTGGTGCTACTGTTGGGTTGGATATTAGTATTCAAGATATAATATCTGCTTCTCCAGATAACAGTATTGGTCTTCCTGTTACTTTGCCTACGCTTTATCAACAGCAGCAGCAGGACCTTGAGAAGCCTCAGATTTTGATGGGCCGGCAACGGCATCAACAGCGTCCTCAAAATCCAAACTTTTCCTTTCCATTACCTCAAGAACAGGACCTCCTTGAGCCCTTGCCAAAGCGTCTCAATGCGGGTAACTTGGAATTTTCTTCTCAGATCCCAAAACTCGCCGGGCATGAGTTGTTTATCAGAAAGCAGCTGCAACAGCATATGGTGGCAGAAGAGGAAGTGTTGGAACTGCTTCACAAGGCTGCAGAGTTGGTAGGGACTGGGAATTTTGCACACGCGCGCGGGATATTGGCGCGGCTCAATCACCAACTATCTCCGGTTGGTAAGCCCTTTCAAAGGGCTGCTTTCTACATCAGGAAGGCTTTACAATTACTTATCACGAATAACTCAGTCTCTCCCCACCTCCGAAAAGCCCCACCCGTTTTGACGTTATCTTCAAACTGTTAGCTTACAAGTCTCTCTGAGTCTCTCGTTTATCCAATTTGTAATTTACTCACCAGGCTCTGCTGAGCTCTTGATGATGCTGACG | |||||||||
gi|164337208|gb|ES842236.1|ES842236 UFL_085_81 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): GATATTGGCGCGGCTCCAATCACCAGGTCTCCCCTGNTAGGTATGCCCCTCCAAAGGGCTGCTTTCTACTTCAAGGAGGCTTTACAAGTACTCCTCCTCATGAATAACCCAGTCTCTCCCCCGCCTCCAAGGAGCCCCACCGCTTTCGATGTTATCTTCAAAATGGGGGCTTACAAGGTCTTCTCTGAAGTTTCTCCGCTCATCCAATTCGTTAATTTTACTTGCAATCAGGCTATCCTTGAAGCTCTTGATGATACTGATCGGATTCACATTGTGGACTTTGATATTGGTTTTGGTGCTCAATGGGCTTCCTTTATGCAGGAGCTTCCCATGAGGAGTAGAGGAGCTCCCTCATTGAGAATTACTGCCTTTGCCTCCCCTTCAACGCACCATTCTATTGAGCTTGGGCTTATGCGTGATATTCTTATGCAATTTGCTAATGAAATTGGTCTAAGTTTTGAGCTTGAGGTGGTTAATTTCGATTCTTTAGATCAGAACCCTCATTCTTTGCCAATGTTTCAATCAAATGGAAATGAGGCAATTGCTGTGAATTCCCTGTTTGGTCTTGTNCGAATCGGCCCTCTGCTTTGCCCCATCTTATGCGCTTTGTGAAACAGCTTTCACCAAAAATGTGGTGTCTTTAAACCAAGGTGTGATAGAAATGATCTGACATTCCCACAACATGTGAATCAAGGCTTTCCAATCATATTAAAACCTATTTAAATCACTTGATGCTGTTATGGCAAATCTGATGCTGTGAACAAAATGAAAAGGTCCTTTTGGTCCAAGAATTGAAAACCACGTGCTGGGGATTCTGCAAAACCCTTAAAAAAAGCCCCTTTGGAACCCACTTTTTCCCCACGCTGAATTCCCCCCGTAAATTTACATAAATTTACTGAAAACTCAGGGCAATTGTTTGTGTTAAAAAAAACCTCAATTAAGGGAATTTATTTGTTTAAAAACGCCCCGGTTCTCTTTGTTTCTTTGGTGGCCACCAAAAAAATTTATCCCCACTTCCCCTTGGGGGGCTCTGAATCAACCCCCCAAAAGGCGGGGGGGACTGGGTCTTTTTATCTTCTCCCACCCTTATACACCTCTTCTGCGAGAAATTATTCACCCACATAATCCNGCAATTTCCCCCCCTTATTACACACAAATCCTCCTACGCGGATTTCGTGAACCCCCCCCTCGCTTGTGATCTCAAGAGCACCCCCC | |||||||||
gi|164347837|gb|ES822760.1|ES822760 UFL_427_24 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): GGCACGAGGTCAGATCCCAAAGCTACCATTCTCAGACCATGAGTTGTTTATCAAAAAACAACAGCTTGTTGGGTTTCAAGAACAGAAGCCATTAATGGTGTCTCAACAACAACAAGCAGCCACATTGTTGGACCAGCTTTGTAAAGTAGCAGAGATGGTAGAGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACTTGTCTCCAGTAGGCAAAACATTTCAACGGATTGGTTTTTACTTCAAGGAGGCATTACAATTACTACTCTTCATGTATAACAATACCCCAGTCTCGAAAAATCCGACACCTTTTGATGTTATCTTCAAAATGGGAGCTTACAAGGTCTTTTCCGAGGTTTCGCCGTTCGTTCAGTTTGTTAACTTTACGAGTAACCAAGCTTTCCTTGAAGCACTCGAGGATTCCGACCGAATCCACATTGTGGATTTCGATATTGGTTTTGGTGCTCAATGGGCTTCTTTTATGCAGGAACTTCCTATGAGGAGTAAAGGAGTTGTTCCTTCATTGAGAATTACAGCTTTTGTTTCCCTTTCGACATACCATCCTATCGAACTCAGTCTTATAAGGGAAATCTTGAACAATCGCTAATGAATCGGTGTAATTTTCGAGCTTGAGGTACTTAACTTTGATTCTTTAGATCAAAACCCTTATTCATGCCTATGTTTCAAATGAATGAAAAACAAGCGCTTGCTGTGAACTTTCCGTTTGGTCTGGTTCGTATCAACCTTCCATTTTGCTAATCTGTTACGATTGGGAACAACCTAAAACCGAAAATGGGGTGTCCTTTAAACCAAGGGGGGGAAAGGAATGAAATTGGCCTTCCCCAAACTAAAAACCAAGCGTTTTTATTTCCATAAAAAACCTGTTGGAAAACCCCTGAATGCCCCCCTTAAACTAAAATTCCAAACCCCTAAAAAAAAAACAAAAAGGTTCCCTTTATTGGGCCCAAAAATTTAAAACCCCCATTTTTTGGGGCCCTTTTTGGATTTCCCCTCCAAAAAAAATAGCCCCCCCCGGGGAAAATTTCTTCTTTTTTGGTTTTTCCGGGGGGTTTCCCCCCCCTTTTTATAAAGTTTACAAAAAAATTTTCCCCCCAAAAAAACAAAAAACCGGGAAAAATGGGGGCTCCGGGGAAAAAGAGGGGGCTTCAAGGGGGTTTTCGAAGGGGTTTTTTTTTCAAAAATATCCCCAAAAA | |||||||||
gi|164312135|gb|EV488068.1|EV488068 132F02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): TATCTTTTGTACCACCACGCCGAATAGATCAATTCCGGTACAAGTGGACCGAATTATAAAGTGCCGAAAGTTCAGTTATCGAGTTCGGGACCGGAGCATTATCTCCGGCGTCAACAATTGCTTCAACAAAGGCCAACCACGCCGAAGATAGTGACTGATGAAATGGCGAACCAACAGCTTCAGCAGGCAATAATAGACCAATTAATTCAGGCCGCAGAGCTGATCGAAACCGGTGATCCGGTACTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCTGTAGGTAAGCCCTTTATAAGGGCTGCTTTCTACTTTAAGGAGGCCTTACAATTACTCCTTCGTTTCAACACTACCAACACTTCAACTTTGTATACTACCAATATGATTTTCAAGATCGCTGCTTACAAATCGTTCTCTGAGATATCTCCGACCGTTCAATTCATGAATTTCACTTGTAATCAAGCAATTCTCGAGGTTTTCGAAGGGTGTAATCGAGTTCACATAATCGATTTTGATATCGGATATGGTGGACAATGGGCTTCTTTGATGCAAGAACTTGTATTAAGAAATGGA | |||||||||
gi|164315690|gb|ES814797.1|ES814797 UFL_236_07 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGAAAATANTGGAGTTCAATGCTGGTTTTGGTGTGGTGGATCATGGTTTCGGCTTCGATTCCATTACTAGTAGCGTTAGCTTGATCAACAACGTCGACCCTCCTATAAGCTGCTCTGATTTTCCGGTGACATCAAATCCGCCGAGTCTTTTGCCGCCTCCTTCGCCGTGTGTATTTCCACAACAGCAATCACAGCTTCAGGTTATGGATGAAAAGCCACAGATTTTCAATCCGCAGATGATAATAAACCAGAATCAAGCTCGGTTTACACAAAACCCGACCATGTTCTTACCTCTTTCGTATGCTCAATTGCAAGAGCATAGCCTTTTATCGCCTCCGCCGCCGAAGCGATTCAACTCCGGTGGACCTTTTTCGGGTTCGGGACCGGAGCTTTATCTAAGGCGTCAACAGCAACAACAGATCCAAATGCTTCAGCAAAGGCCAATTACAGGGAAACCGAANATCGTTACGGATGATCTGGCGAACCAGCAGCTTCAGCAGGCGATAATTGATCAATTAATTCAGGCCGCAGAGCTGATCGAAACCGGTGATCCGGTACTCGCGCAAGGGATATTGGCGCGGCTCATTCACCAGTTCTCCCCTGTAGGTAAGCCCTTTATAAAAGCTGCTTTCTACTTCAGGGAGGCCTTACCATTATAACTTCCTTTGAACACTACCAATACTTCAGTAATGTCCAATTATAACATGATATTCAAGATTGGTGCTTACAAATCGTTCTCCGAAATATTTCCAATCCGTCAGTTCCCAAATTTTACTTGTAATCAACGGTTACCCGAGGTTTTCAAAGGGGGGAAAAAGGTTCCTATAATCCAATTTTCAAGTTTGGTTTTGGGGGGAAAAGGGGGTTTTTTTTGAAGCAAGAAACTTGGTTTTAAAAAAAGGGGGGGGGGCCCTTTTCATGAAAAATTCCGGGCCTTTGGGTTTCCCCTTTCAAGTCCATGAAGGATATCCGAACTCGGGTTTCACAATCCGAAAAACCTTAAAGCATTTATGGCTAGTGGAAATCAAAAATGGGATTTTTGATATCCGAAAATCATGAAGCCTTTGAAGGCCTTGAAATTTCGGGGTTCTTGGCCGGTTGCCCTTTTTCCCCTTGGGGCAGAAAAAAAAAAAAAAAATTGGGGGGTTTAATTCCCCCCCCAATCGGGGTTCTTTTTTTTCCATTTTACCCCTTTCCCATCCCTTGGCCCCCCGGGGGGCCCCTTTCTTTTTTTTTTTTTAAAAACAAAAATTTATTTTTCCCCCCCCACAAA | |||||||||
gi|73860795|gb|DT463534.1|DT463534 GH_CHX13L05.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX13L05 5', mRNA sequence TTGAGCCGCGCCAATATCAC EST sequence (targeted fragment marked with yellow): GCGGCCGCGTCGACAATGGTTCTTCCAGGAAATAAAGGGGACGTCTCGTTTTGCATCTGATGCTAAGGGTTGTCCTTTAGATTCGTTCAGCTCTGGATTGGAAAATCCAATTGGTTGTTATGATGGCGCGGTTCAGGAACTTATTGTCATTGATGATCTTCTGTTCGCGTTGGTTGGAATTGAAGGACGATACATTTCAATCAAAAGAGTGCATGGAAAGGCTGATGTTTTTAGTTTCCAAGTTGATGCATCTATGGATTTAGCACTTCAGTTTAACTTTGGATTCAATTCCTTAAAGTAAAGGACTTCTACTAGCAGACTGCTTGAGCATGGTTTCTTTTGGGACTCTTGAAGCACACATGCTTTAAAGCCAGATTGCTGAAGATAAAAGACTATATTTGTGGAAGTAAAAATCTTTCCCTTGAAGACTAGCAATAAGTCACTTCCATGGATCATTTTAGTCTTGGAGTATGATGGAGGAAATAGCAAAACGGATATTTCCTTTGTGTGAGAGCTTTCTCCTGATTGACGAGTTTGTAGAGTCTGGATCTCAGTTCAAGAATGGGCTTGTCAATCATGCCTTGGCTGCTGCATTGTGGGCACTCCTTTTGGCCATGGTTGCACAGCTTGAACACCAATTTCGACTTAGAAGACTTTCTATTCAAGGATTGTGGTTTTGTTATCAGCCCATGATGGGCTCCATGCAAGCATTGTCCACTGTGANTAAGAAGGTTTCAGCTAATAATTATGC | |||||||||