| mature miRNA: TTGAGCCGTGCCAATATC species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|257190535|gb|GT050697.1|GT050697 CLS_cLiFproots_79a4_1_l22cLibkit5LD_F11 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): CAACCTGTTTACGGGAACAAAAATCAAGTTTGGACGACATTGAAATTGCGATTCTTTCTTAATTGTATTTTTTTATTGGGAAAAAAATATCATCAGTTCTCTACATCTTGTACTGCATCGAAATTACATCTTTGTGATTGTATGGATTTTTTTTAACTCCGAGGCAGAATCAAAATTGCTTCTTTCATAACTGCAATGTTTGTGTTGCTTTACGAGAAAAAGTCTGTACCTATTGTACTACATCTAAATTGTACATCTTTGTGACTATGAGAATTGTAACTCTTGTACTACATTGAATTTCTTTACGGGAGCCATGGAGGTGAGTTCATTGTCCTTTCGTTTCCCCTAGGTCCACTCCTAGTTACTTCAAGTTTGTATCAACCCTGATTTGTTTCCATGCCAAATGCAGGAAGACTGCGGAGATGATAGAATCAGCACCTTGCCCAATGACATTCTGCTCAACATTCTTGACCGACTCCATGTCTCGGACGCTGCAAAAACCAGCATCCTCTCCAGGCGGTGGAGTCAGCTTTCCGCCAAGCTCCCCCGACTTGTAATAAACCCTCTGCCCGAGGGTGTGTTAAGCCTATTTGGAAGAGATGAGTCACGCACCAACATCTCTGATGGTGATTTGGCTCGGCTCAATGCAGCTACTTTCAAAGCGACAAAGAGTGTACTAGCACGCAGAGATCCAGGCAAAGACACCATCCGCCTCCTGTCTACGATGTTCTACTTGATAGGTGATGTCCCCATATCCATTGGACATGTTGTTGGCGAGGCCATGGCGGTACACCAGATTGAGAAAGCTGAATTCACAATTTTGACAGTGAAGGGCCGCGATCATTGCACACTTAATGATGTGGTGAACTACGGGAAACAGTTTGTGTCCTTTTTTAATGAGTGTCGGAATGCATTTACTCGTTTGACACGACTCTACTTGGAGAATTTGAGATTTGCTGAATCTGACTTCGTCTCCACATCTTGTCACTTGCAGCTATTAAAATATTTAGGACTTTTCATTGCGACA | |||||||||
gi|74423209|gb|DT679384.1|DT679384 s13dFA03B10DS080_76417 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arundi TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCGACTTATAATAAATCCTGTGCCTGAGGATATGTTAAGCCTATTTGGAAGATATGTGTCACGCGCCAAAATCTCTGATGGTGATTTGGCTCGGCTCAATGCAGCTACTTTCAAAGCAACAAAGAGTGTACTAGCACGCCGAGATCCAGGCCAAGACACCATCCGCCTCCTGTCTACGACGTTCTACTTGATAGGTGATGTCCCCATATCCATTGGACATGCTGTTGGTGAGGCCATGGCAGTACACCAGATTGAGGAAGCCGATTTCACAGTTTTGACAGTTAAGGGCCGCGAACAGTGCAGTCTTGTTGATCTGGTGAGCTATGGGACACAGTTTGTGTCCCTTTTTAATGAGTGTCGAAATGCATTTATTGGTTTGACACGACTCTACTTGGAGAATTTGAGATTTGCTGAATCCAACTTAGTCTCCAACATCTTCGTGACTTGCAAGCTATTAAAATATTTAGGACTTT | |||||||||
gi|74450364|gb|DT706539.1|DT706539 s13dFA04E08ST055_100230 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCGATCATCACCCCACCCGGATCACCGAGACCGGAGAGCGGCGATGAGCTCCGAGCCGCAGCAGCCGCACGCGGTGCTGATCCCGCAGCCGGCGCAGGGCCACGTCACGCCCATGATGCACCTCGCCAAGGTGCTCCACGCCAGGGGTTTCCACATCACCTTCGTCAACTCCGAGTACAACCACCGCCGCCTGCTCCGATCCCGCGGCCCAGGCTCGCTGGACGGCGTCGCCGGCTTCCGGTTCGAGGCCGTCCCGGACGGCCTGCCCCCGTCCGACGACGACGACGTCACGCAGGACATCGCCGCGCTCTGCCTGTCCACCACCAAGCACAGCGCCGCGCCGTTCGGGGAGCTGCTGGCCCGGCTCAACGGCACGCCAGGGACGCCGCCCGTGACCTGCGTCATAGCCGACGGCGTCATGAGCTTCGCGCAGAGGGTCGCCGAGGAGATGGGCGTCCCGGCCCTCGTGTTCTGGACCACCAGCGCCTGCGGCTTCATGGGGTACCTCCAGTTCGCCGAGCTCGTCAAGAGAGGCTACGTACCACTCAAAGATGCGAGTGACCTGACGAACGGGTACCTGGACACGGCCATCGACTG | |||||||||
gi|257184074|gb|GT040559.1|GT040559 CLS_cLiFproots_30a4_1_b04cLibkit5LD_A02 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): AGACGCCGTTAAAGAACACGAATACATTTTGGTTGAATTTTATGCCCCATGGTGCGGACACTGCAAGGCATTGGCGCCCGAATACGAGAAAGCCGCCACGCAGCTTAAAGAAGAAGGATCTCCACTCAAACTTGGCAAGGTTGACGCCACCATCCACACGGAATTGGCGAGCAACTTCGAAGTCCGTGGTTACCCCACGTTGAAACTGTTCAAGAACGGAAAACCCAGCGAATACGGTGGCGGCCGTGATGCAGCTTCGATCATCGCATGGCTCAAGAAGAAGACCGGCCCGCCAGCCAGGGAGTTGAAGAACGCCGACGAAGTCAAAGATTTCAAGGAATCGGCCGAAGTTGTTGTCGTCGGATACTTCAAAGACTCGACGACAGATGACGCCAAAGTGTTTTTGGAAGCCGCCGGCTCAATCGACGATATTCCATTCGGTTTGGTCCACGACAAGGATGCCGCCAAGGCTTTGGATGTGTCCAAGGAAAGCATTGTTCTCTTCAAAAAGTTCGACGAAGGCCGCGCTGAATTCGACGAAAAATTGGCAGTTGATAAGATCAAGTCTTGGATCCAAGCTAACCGCTTGGCGCTCGTCTCCGAATTCACGCAAGAAACCGCATCGGTCATTTTCGGCGGTGAAATCAAGTCGCACAACTTGTTGTTCGTCTCAAAAGAATCGTCCGAATTCGACAAATTGAATGATGAATTCCGCGCTGCGGCTAAAGAATTCAAAGGAAAAGTGCTTTTCGTTTACATCAACACCGATGTTGAGGACAACGCCAGGATCATGGAGTTCTTCGGGCTCAAGAAAGAAGATCTGCCAGCCATCCGCCTCATTTCGCTCGAAGAAGACATGACCAAATTCAAACCCGACTTCAAGGAAATTACCACCGAGAATATTGTCAAGTTCACTTCCACGTATTTGGAGGGCAAACTAAAACCGCATTTGATGAGCGAAGAACTCCCCGAGGATTGGGACAAACAACCCGTTAAAGTTTTGGTTGGAAAGAACTTCGAGGAGTTGCCCGTGACAAAAAAGAACGTTCTCGTCGAATCTATGCCCATGGTG | |||||||||
gi|74338552|gb|DT674373.1|DT674373 s13dFA11A05DR033_102848 Tall fescue, Festuca arundinacea Schreb, Drought-stressed roots Festu TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGCTGACGAACACCGAGGGGCTCAGATTCGGCGTGGTTGTGGCACGGTTCAACGAGATAGTGACCAACTTGCTTCTGCAAGGGGCTCTAGAGGCATTCGAGCGATACTCCATCAAAGGAGAAAATATAACAGTTGTTAGTGTTCCTGGCAGTTTTGAAATTCCTGTTGCAGCACAGAAGCTTGGGAAGTCTGGAAAGTATGACGCAATTTTGTGCATTGGGGCTGTGATTAGAGGTGACACAACCCATTATGATGCTGTTGCAAACTCTGCTGCATCAGGTGTACTCTCTGCTGGATTGTCTGCTGGTGTCCCCTGCATATTTGGTGTTCTTACCTGTGATGACATGGACCAGGCTCTAAATCGTGCTGGTGGCAAGGCTGGGAACAAGGGCGCTGAAACCGCTATAACTGCTATTGAGATGGCCTCTCTGTGTCGGCATCACCTAGGCTGACACCAGTCTTTGAGACAGCAAGATTTCTCTTTTCTCCTATCCACGGCTATCAGAGTTTTTTCTTCATGATTGTTTCANACTTTTTTTTATTGCTGCAGGCTAGTGTTTGATCTGTCGTTCCAAATTATTTGTGTCTGTATTACTCTGATT | |||||||||
gi|74430344|gb|DT686519.1|DT686519 s13dFA23C10FM082_445088 Tall fescue, Festuca arundinacea Schreb, Floral meristem Festuca arun TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTCGTGCCGCCTGTGCGTGCGTGCGGGAGGCGCTGGCGCGGCTCAATGAGGTGTGCGCGGACGCCTCCGCGGCGTCGCTGCAGCTGGAGGGCTGCTACGTGCGCTACGACGGCAGCGACTTCGTGGGGCGGCCCGACACGGCCATGGTGTACCGCAAGTGCAGCGCCAGCACCAGCGCCGACGGCGGCTTCCTCGCGAGCCGGGACGCCGTGCTGGGCGCGCTGCAGCAGGGCGCGGGGCCGAACGGGTACAGGGCGAGCAGCTCCGGGAGCGTGCAGGGGGTTTCGCAGTGCCTCGGCGACCTCGCCGCCGCCGACTGCGCGGCGTGCCTGGCGCAGGCTGTCGGGCAGCTCAAGGGCACCTGCGGTACGGCGCTGGCCGCCGACGTGCACCTCGCGCAGTGCTACGTCAGGTACTGGGCCAGCGGCTACTACTTCCGCCCCTCACAAGATTATTCGCAAGATGACGTTGGGCGGACCGTGGCGATAATAGTGGGCATCCTCGCAGGCCTGGCCCTCATCGTGGTCTTCATCTCCTTCCTCAGGAAATCATGTTAATCCCTAATTCTAATTAG | |||||||||
gi|74441871|gb|DT698046.1|DT698046 s13dFA59E05LF035_98462 Tall fescue, Festuca arundinacea Schreb, leaf Festuca arundinacea cDNA TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGGCAGGGTGTGCGTCACCGGAGCTGCCGGCTACATCGGTTCCTGGCTCGTCAAGAAGCTGCTCGACAGAGGCTGCGCCGTCCACGCGACCTTACGGAACATCGGTGATGAGAAGAAGACGGCTCTGCTCAAGGGGCTGCCCGGCGCGGCGGAGCGGCTGAAGCTGTTCGAGGCGGACATCTACGACGCCGTCACCTTCGAGCCGGCGATCCAGGGCTGCGACTTCGTCTTCCTCGTCGCCACCCCGCTGATGCACAACTCCGGCAGCTCAAAGTACAAAAACACCACGGACGCGATCGTGGACGCGACACATGCTATCCTAGAACAATGCGAACGGTCCAAAACGGTGAGGCGTGTCATCCACACAGGCTCCATCGTGGCGTTGGCACCGCTCAGGGAGGATGGCGAGGGCTACAAAGAGTTCATGAACGAATCCTGCTGGACCCTGCTTGGGGTTCCCTACTGTCACAGCAACGAATTCTTGGACGCTTATGTATCCTCCAAGACCCTCTCTGACAAGGAGCTACTCAAGTACAACGACTCTTTCTCGTCCTCCTCCC | |||||||||
gi|257187007|gb|GT048324.1|GT048324 CLS_cLiFproots_73a1_2_k01cLibkit5LD_F01 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): TAGAGACCAAGTCAGTTTCAGCTGATGGACCTGAAGGTTCTAGTTTAAGCAACCCCGAGAAGCAGGAAGAGAAAAAAATGGTATCAGACGATATTCGAATGAAAAACAGCAAGAACGATCATGTGAAATCAACAATACCATCCCCGACAACTCCGTGGGCAGAAAATACTGATCCTGTAGCTTCCAAGCCTGGTAAAGGCAAGGCTCAAGGATCAGAGGCTACAGAACGACAAGGAGACAGTTCAGTTCCGGTGACTAATCCAAAGAAGGAATCAAGACCTGCATTTGAAGATAACATTGTTCTTGGTGTAGCTCTTGATGGCTCCAAGAGGACACTCCCAATTGATGAAGGAATGAACCCTCATCTATCCCTATCTGAACATGAGCAAGACACCGTTGAGGCTGCTTCATCGCCTAAGAAAGGTCAAAGCTATTCACTGTCAGGTCAAGAGAAGCCTGACCAAAGGAATCCTGACAGGTGATCCATGCCGTAGTATATCTTTACCAGTGATGAAAATGATATTTGTCACCAAGCCAACCTTTTTTGTGCGCTTGTGCAAATGCAATCTGTCACCTGGCTCGCTTATATATGTTTAAGATGTATAAAACGCCAGTGGTACTTCTTTTGTCCGGGGAATGTGCCTGTTCAATTGCACATTAGGAATTTACTGCCAGGCTTGTTAAAGTCGCAAGGGGTTTTCCGTACAATACTCTGGTACATATGTTGGATCTGCTGTAATGGATCTAGATAAAGATGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|74426871|gb|DT683046.1|DT683046 s13dFA44F10DS079_124102 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arund TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGGTTTGTCCAAGCATGCAGAAGCGCAATCTCTGAGCTTTATGAAGATCGGCACTCACCTGCGCCGGTCCTGCTTCCTCCAGTCCTTCTCCGTCGTCTTCCTGTACTACTTTTACGTGATTTCATAATTGGCCCTCTCAATCCTCCATTGCTAGTAGTACAACTTTCCTCTTCTTCTTCTTGCTTCGACAAGTGATAAATAAGAACGGTAGCAGCAGCATCAGCAGCAGTAGCCAAGTAGGGATTCATTTCGGTGCGAGCGAAGATGTCGTCGTCGTCTCTGTCGCCGGGAGGAAGGCTGTCCGGGTCGGACGGCGACTCGGCGGGAACGTTCGCGGCCGGGGACAACCGGCGGGAGAAGCGGCGGCTGTCGAACCGGGAATCGGCGCGGCGGTCGAGGCTGCGGAAGCAGCAGCACCTGGACGAGCTGGTGCAGGAGGTGGCGCGGCTCAAGGCGGAGAACGCGCGCGTGCTGGGGCGCGCCAACGACATCGCGGGGCAGTTCGTGCGCGTCGACCAGGAGAACACGGTGCTCCGGGCGCGCGCCGCCGAGCTCG | |||||||||
gi|74446971|gb|DT703146.1|DT703146 s13dFA34E10RT083_86033 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cDN TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGCATTTCGGTGCGAGCGAAGATGTCGTCGTCGTCTCTGTCGCCGGGAGGAAGGCTGTCCGGGTCGGACGGCGACTCAGCGGGAACGTTCGCGGCCGGGGACAACCGGCGGGAGAAGCGGCGGCTGTCGAACCGGGAGTCGGCGCGGCGGTCGAGGCTGCGGAAGCAGCAGCACCTGGACGAGCTGGTGCAGGAGGTGGCGCGGCTCAAGGCCGAGAACGCGCGCGTGCTGGGGCGCGCCAACGACATCGCGGGGCAGTTCGTGCGCGTCGACCAGGAGAACACGGTGCTCCGGGCGCGCGCCGCCGAGCTCGGCGACCGCCTGCGCTCCGTCAACCAGGTGCTCCGCGTCGTCGAGGAGTTCAGCGGCGTCGCCATGGACATCCAGGAGGAGTGCCCGCCCGACGACCCGCTGCTCCGGCCGTGGCAGATCCCCTACCCAGCCACCGCCATGCCCATCGCCGCCACCGCAACGCACATG | |||||||||
gi|74447934|gb|DT704109.1|DT704109 s13dFA41C10RT070_106282 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cD TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): GGCACGAGGCAAGATTTTCGATCTCCTGGGTTTACATTTGGGATATTGGGTCCATGGAAGGAGGCAGGCTGCTATATATATGATGGTGTGTTTAATTCGCATCCCGGAGAGCTAGCTATGCTTGCTTGCTTGCCTCTCCGAGGAGGATTACTGGCTTGGAGAGTGCGATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCGTGCCAATATCGCAAGCTTCCTGCCTAGCCCGCGGCCTATGCTGTGAGGAAATACTTGCTTCTTCATAAAGGTTTGAATGCTACATGATTTTTCTTACAGTAGTATTTCCTAGCACGGCATTTCGAAGGAAATTCTCCACCCATTCAGATTTCTTACAAATAATCCTTTCTTTTTCATGTTGTTCCATCAAACAATATTCGGTAAAAAAATCCAGTGATCATGACATTGNCACTACCTGGTTTTATCTATTTATATGCATCTTTAACATCTTGTGTATCAAAGAGGCATACTTAGGATCCTTGGTGTGGGCTACCCTCCATTCCTCAGT | |||||||||
gi|257184830|gb|GT048799.1|GT048799 CLS_cLiFproots_74a3_1_b21cLibkit5LD_A11 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTGAGCCGTGCCAATATC EST sequence (targeted fragment marked with yellow): AGACACAGAAGTTACATAGGAGAGTATTTTTTGAAAAAATTGATCCAAAAACTCAAGCTCTTATGATTTACATATCCTGCTTTGTGGACATCACATTTTGAAGAGTACCTTAATGTCCAGGAAACAGTTATGTTGGATCTTCTTACAATAGTTGGCCACCACAGGGCAAGGCTTGCTACACAAATTAGAACAGTTCAGAAATCATATGGCAATGCGGACATTGATAACATTCCTTTTGGAGAGGATACATATAGTCGTGTACGTGGCCGTCCGATCCTGATCGATACTTCTGCAAGGCTCAGTGAGGACAAGAAACCTCGACCGGCATCACGCGAAGATCAGAAAGTCAAGACAAGTGTATCAGTAGAGACCAAGTCAGTTTCAGCTGATGGACCTGAAGGTTCTAGTTTAAGCAACCCCGAGAAGCAGGAAGAGAAAAAAATGGTATCAGACGATATTCGAATGAAAAACAGCAAGAACGATCATGTGAAATCAACAATACCATCCCCGACAACTCCGTGGGCAGAAAATACTGATCCTGTAGCTTCCAAGCCTGGTAAAGGCAAGGCTCAAGGATCAGAGGCTACAGAACGACAAGGAGATAGTTCAGTTCCGGTGACTAATCCAAAGAAGGAATCAAGACCTGCATTTGAAGATAACATTGTTCTTGGTGTAGCTCTTGATGGCTCCAAGAGGACACTCCCAATTGATGAAGGAATGAACCCTCATCTATCCCTATCTGAACATGAGCAAGACACCGTTGAGGCTGCTTCATCGCCTAAGAAAGGTCAAAGCTATTCACTGTCAGGTCAAGAGAAGCCTGACCAAAGGAATCCTGACAGGTGATCCATGCCGTAGTATATCTTTACCAGTGATGAAAATGATATTTGTCACCAAGCCAACCTTTTTTGTGCGCTTGTGCAAATGCAATCTGTCACCTGGCTCGCTTATATATGTTTAAGATGTATAAAACGCCAGTGGTACTTCTTTTGTCCGGGAATGTACCTGTTCAATTGCACATTAGGAATTTACTGCAGGCTTGTTAAAGTCGCAAGGGTTTTCGTACATACTCTGTACATATGTGGATCTGCTGTATGATCTAGATAAGATGAAAAAAAAAAAAAAAAA | |||||||||