| mature miRNA: TTGAGCCGTGCCAATATCA species: Citrus reticulata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188448934|gb|EY767854.1|EY767854 CR05-C1-102-021-C05-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citr TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTCTTCCTCCTGTTCTCACCTATTTAGTATTTAAACATCCATCAGAAGAATGGTTTCCATTCTCTTGAAGAAACTCTTGACTCTTCAAATTTAAATTTCCATAGCGTAAAGACTTATTCTCAAGAAATTAAGATGCAGCCTTGCAGCAGCAGCGGAGAAATGCAAGGAATCAGCTCGCTCTTGAGCAACGGAAGCCACGAGCAGCAGTCGCAGATCCATCAAAGCGCGACGTTTGATCCAACTTCGCAAGACGACTTCTTAGAGCAAATGCTATCCTCTCTCCCATCGTGTTCTTGGACTGACTTGAAGTCTCCCTGGGGGGTTGTTGACCTTAACCCTAATAACAATAATAATAATATTAACAACAAGCAGCCCAGAGACTTATCCGACGAAACGGCGCCGTCCACTACTCAAGAGAATAATGTCCCTGCAGGGTTTCAGTTCGACGAGTCCATGATTTTAGCTTCCAAGATGAGACAGCATCAGATCAGCGGGAATACTGGGAGTGGGAATAATAATTCTGCTGCAGCAAAGTTTATGATGCAGCAGCAGCAACAAATCATGATGGCTGCTGCTAGAGGTGGCATCGGGTTGCCTTTATCACTTGGAAATGGTGGCGATAACGACATCGTTGATGTCTCATCATTCAAGTCCCAACAGGGGAGGAGATGGCTCAGTGCAAGCACTCTACAATGGCTTCACTGGATCTTTGCATGGCTCAACCCACCCTCAACTTTTCATCATCTTTCGGGGAGGATCGATGCCCCGGGCAGACCTTTTGGGGGACCAGGGCCG | |||||||||
gi|188241232|gb|EY762606.1|EY762606 CR05-C1-100-056-E05-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequen TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGCTCAAATCCGTGTCAGCGCGTTGAAGAAGCTAACAAGTCTTGCTGGCCTTTGCACTTTCCGTCCACTTTCAACATTTTATTTTGCATGCTTTGATTGAATCGTGGGGATTCTTAATATTTGCTCATGATTTACATGAGAATTTCAATTCCCATGTGTTAAAGTAAAGCAACACTTTTTTTTTTGGGATTTTTTTTTGCTTCGTTCTAGAAATTTAGAGTTATTATTTGCTCAATTGCGGCTGGATTTTACTGAACAACACTGTAGAGAAATCAATTTTTCATTTTTCTTTGCTGTTTGAGCTCGTATGATTGCTTGAAGGGCAGTTAGTACACAACCCATTTAAAAAATCTGTAGTGTGCTGTTTTATGATCTGTATCAATTAGTTAAAGCTTAAAGATCGAAACTTTAGTGACTACTATTTTTATTTTGGGTCTGAATTGTTACGCTGCAAGGGTTCCGTTTATATATTAGAGAGGATTTGTGGTTCTGTTTATTGGTGAAGATGGTTCAAACTAATGAAGTAGTGAATGATAGTTTGTCCTCAAATGGGTTGATTCATCATACCAACGGTTCTTTAGAAGGAGAGGCTCGATGAGCTTCGTCGTCTTATGGGAAAAGCAGAAGGTGATCCCTTGANGATTGTTGGGGTTGGGGCANGTGCCTGNGGTANTGTTTTCACTGCTATGTTGCAAAATAGTTATGGTTATTTAAGAGATAAGGGTCTTATTAGGATATTGAGGAGACCTGGAAGATCAGTTGATAAGGGCACGGCTGAGCACTTGTTTGAAGTGATCAATCCAGAGAAAAAGTCTTGAGGAGATGT | |||||||||
gi|188362320|gb|EY809328.1|EY809328 CR05-C3-702-023-F02-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): GACCTGCAGTACGGTCCGGATTCCGGGTCGACCACTTCGTGAGTTTGAGTGCGGCGATTCTGTTCCGCGATGCCGGCTTGAGCGTGGTGTGGCCGGACTTGCTGGCGCTGGCGGGGATTGGGTTGTTGTTCTTTGCGGTGGCGTTGGCGCGGTTCAGGAAGAGCCTGGCTTCCTGAGTTGCCTGTCAGGGCCTCTTCGCGANNCNNNTCNNGAGGGGGCGGAGCGATACGCGAGGGCTGCAACATGCCGATCGTACAAACCCCCACCCTAATACCAGCGACCGATCTCAATAGATGCGCAGCGCCTTGGGCGCCGACCCGTCACGGCGAGGAATGTGTTGGCACTGACATAGGGACCACGGGATAGCGCGGAGACCCGCTCCATAATCCAGCCCCCACACAGCCACCACACATCGCGCCAACCCCCGCACCCCCCATCGCCCCCATCCCGGCCCCCCTATGCTGGGGGGGGGGGGGCGAGCACGGCACCCACACAGAGCCGCCTCCCCACATTCGCCAGCCCCCACCGACCCACCCACACCGCCACCCCACCAGCCCAAGGCTGCCCCCCCCGCGCTCCCGCCCGGAGCCCGAACCACCCCCCCTACCTCCCCCCCTCATGCCACGAGACACGACGCTCGACTCGCCAGAAGAAACCCGACCCCTCGGCCCGCACACACACTACTTGCCTACAGCAATCGACACACAGCAGGACCCAAGAGAAAAACCCGGCCGGGCACCAGACCGGCCGCGCAACGGAGCCCGGGATCAACCGACCGCCACACGCCGCTGCAGAGCGCTCGCGCAACATCAACACCGCCCACGCCCAGCCACCCGGCAGAAAGACCGACACGGGCGGAGGATTAGCGGCCCGAGACAGACCAAGGACGGACGTCCCCACATCCGCGGCACCGAGACGACCACGCGCGGCCACCGACACTCGACTAATCATTCCGCGCGAGCACACACCGCACACGTGACGAACCTCCCCGACACGGCGAACTACTGCCACCGCGCGAAGCCCCGGATCCCATAGCCACACGCGGACGACCCATACGCCCCCCGACCCCCGCACGCACAACTAC | |||||||||
gi|188394219|gb|EY776197.1|EY776197 CR05-C1-103-015-B07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATGAAGTTCTGTTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGTTCAACTGAACAAGTTTATAGATTCAAAAAAAAAAAAAAAAG | |||||||||
gi|188357410|gb|EY775888.1|EY775888 CR05-C1-103-011-D10-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAAAATGGCATGGCTCAAGATCTTTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATTACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCAATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATATGAAGTTCTGTTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACTCTCCTGAAATGAAAAAGTTCAACTGAACAAGTTTATAGATTCAAAAAAAAAAAAAAAG | |||||||||
gi|188268780|gb|EY779648.1|EY779648 CR05-C1-103-053-H07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): GACCGCAGTACGGTCCGGATTCCGGGTCGACCACGCGTCCGTTTTTTTTTTTTTTAGAATCTCCTTTTTGGATATATATATATTTTTTTTTTGATGACATGACACTATTGCTCAAATTACAACTCATATTACATGAGAGTATAACTGATATGTACAATCATATATATATACTGAGTCCTGTTGGCATTAATGCTGATATGGCACCGCTCAGATTTTTAACTCTCTCAAATATTCGAAGGATGTCAAACTCCCCTCCTAGGAGAAAGACTGTCTTCACTCAAGCTCTGGAGCTCCAAGAAAGGACATTTAAATTAAACCCCTACAATGCGTCTGCGGAGGCTCGAACCCCCTCCCTCACATTTGTGAGGGAGTGGAGCCCAAGTGGTTCAATCTTGGAGAATTAAATACCTTTTGTTGCACCACTTCCATAAACAACTACATCATCTTGTGATTCGGATTGACGAAGCAAGACATTCACAAAGTAAGAACCATAGAGATTTGCTGAGACAAAGGTTATAGGGAATTTTAGCTGCCTCTACAATTCTACTGCCCTTCTTACCATTCGTTTTTTCCTCCAAGTAAGCTTTAAAAGGAGGCAAAGGCCTTACCCTGTCTCTTCACATCCAAACTCAGAATGGAAGAAACCTCTAACAGCCAAAACATAGTATGTTTAAGATCTGTTCTATATAAACAAATTTGAAGCAATTCAGCACTGAATTGTAAAAAAACACTAAAATGTACAAAGACTCAAAAATACTAAATTAAAATTTGTGATTTTAAGGAATTTGCTAAATTTCTAACCCCCCCTATATATTTTTTACTCCTTTTTTTAAAAAAACAACAATTGGCCTAACTTAAATCCACATTTTACCAAAGGGGGGAACCTCCCCCTTTAAAAATCCCCTAATATTTTCCCTTTTAATAAAAAAAATT | |||||||||
gi|188356024|gb|EY772324.1|EY772324 CR05-C1-102-064-A09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citr TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CGAAGCTGCAGTACGGTCCGGATTCCGGGTCGACGCACTTCGTGAGTTTGAGTGCGGCGATTCTGTTCCGGGATGCCGGCGTGAGTGTGGTGTGGCCGGACTTGTTGGCGCTGACGGGGATCGGGTTGCTGTTCTTTGCGGTGGCGTTGGCGCGGTTCAGGAAGAGCCTGGCTTCCTGAGGTGCCTGTCAGGGCCTCATCGCGAGCAATCCCGCTCCCACATTGAACCGCATTCTCATGTTTTAACTCAGATTAGGTGAGAGTATCGGTCTTGACATGGAAAGCATCCCGACATGGAAGAACGATATGTACACCGAGTGTGGTCGCCACACAGCTTGGACAGAGTACCCTAAAACGGTTGAACCGTAATTCGGCGGTGGGATCCATTTTCTTGCGCTCTTCCCTCCTGGAGCGGTGCACACCCGAGGACTTTTCCTTTTCTATTCGCACAACCGAGGCTAAAGAATCTACGGGCTAGCGGGGGGGGGGGGGGGGCGCGCACTCCCAGTCCCTCGTTATTCTTCCCATCCCCCAACAGCAACCTCTGATTAGGTAGCTCCTTCTACCTCGCTACCCACCGAATGGGGGGGCGCGGCCCACCATTCGACCTTTGTTGCTCGGACCGCGCCCGACCTCCCCCCCCGAAATCATATTCCCCCTAGACATCCTTATCACCAGACCCCCGTGCGTCTCCTGCGAGCGTCTGGATAACGTAAGGCGGACGCTGCGCCATAACGGACTTTGCGACACCCCTCTCGGCTCTGGACCATCCCATCATACTGACAAAACAACCTCTCTATCGCCGTCTTAGAATGATGCCCACATCTCGCTACAACGAATACCAACCCTCTTTTCGCATGGACTTCGCCACGCCTAATCGTCGCCTCTAACCTTCACAGCACTTCAGCACGACAGCATGACATGAAGTCCGGTGTTACCATNAAATTAACGATCC | |||||||||
gi|188367608|gb|EY784233.1|EY784233 CR05-C3-700-044-B04-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TTGAGCCGTGCCAATATCA EST sequence (targeted fragment marked with yellow): CACGCGTCCGAAATCCTCGAAATTTCAAACCTATTGAATTGCATTAGGCTAGTTCTGAGATGGCGGAGGAATCATCGCGTCCGATAAGGTTGATGAATTTCATATCGGAGGAACAGTTGGATGAAGCTAAAAGAACAAGGGGCGAACGAGTTGATGATGGCACTGCTCAGAGAGATAGGCCTCTCTTTGAGATACTGAAGGAGAATAAAGACAAGAAGGATGCAGAATTCAATGAACGCTTCAAGCACAGACCACCCAAAGCTCTGGACGAAGATGAGACTGAGTTTCTTGAAAAATGGGAAACGTCTAGGAGAGACTATGAGCGTCAAGTGGCTGACGAAGAGGCCCAACAGCTTCGTAGTTTCCAGGTAATTTTCTCTCCAATTTTGATTTGTANAGTCGCTTTACGGTTTAGGTGCAAGAAAACAGATGCCCTATCCTTTGTTTTATGTTAGAATAATATAAGTATGGCTCAACTCCCCAACACGTTCACATATATATACTTATTAAATGTGCAGCATTTTAGGTTTGGATATGTGTGAAACCAATGAATATAGGCGTACCTAGGCTGGGAGGTTACTTACGGGCTGGAGCTGTCGATGAATGGTTGTCGTANTGATTGTTATGGCCCCAGGCCCCTCCCTAATTATTCCCGGAGGGGTGGGGGCATCCTCGCGCCGGGCCGTAGAGGGTGATGTCGCCGCCCTTCGTCCCGGCCCCCCACCGCGCTGCCGCGCGGAGCTTCCCGGTTGGGCCGTGGAGGTTGGAGGGGAAACGTGCCGTGCGGGTTTTCGTATGGCCGGGCGCAACCGCGGGCGGGAGTCGTGGTGTTGATGGCGTGTGGAGGCNNTGGTCTTTGTTTTGGGCGCCCGGTAGTGCGGCTCCGGCCTCCC | |||||||||