| mature miRNA: TTGAGCCGTGCCAATATCAT species: Triphysaria pusilla database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159582999|gb|EY134999.1|EY134999 CBTH474.g1_C23.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusill TTGAGCCGTGCCAATATCAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTATGAAATTGATCAAATTATTGGCAACAGTGACGAAGTTTGAAATATATATCAGGGAGGCCTAAAAATCACCGAACAACTTAGACAACTTAATCGGGGGGCCGGCCTAATATATATAATTTTTTCGAACGAACTATGAATAAAAAATACACTATTTATATTTTTTCTTAACAAATTACAAATAAAAATACACTACTGCACAAAAAAATTGGGGGTGAGACCCCCCTGAACATGTAGAAGCTTCGCCCATGATTGGCAGGGCTTTCATTTCCCAAATAAGGCTATGAAGCTTATGATGCTTAGTTTCTTGCCTACAACTCTTGGATCTTCCAATTGAACAAGCAACTAAACATGTTTCCAACAACAATTATCATAAAATAATCACTTAATATTAAATGTAAAAGAATTTCCAGGATTTAGACTTTAAGAACATAATAATACTTAATCAATTATCATAAAATTGACGAGACGAGACGAAAAGCAAAGCGGAACATGATATTGGCACGGCTCAATCAAACTAAAGGACCCAATTCTTGGGAGATTTGATTTGATTGAGCCGTTCCAACATCATAACTAGCTACTACAAAAAGTGTGGCTTAGTTTTAATTAAAAAAAAAAAAAGTTTACCTTTATTGCAATCCTCACGTGGAAGTTTGAGTCGGATCATCAAGTCATTGCGATTTAGGATGTCTTGGTGAAGAGAA | |||||||||
gi|159701541|gb|EY145734.1|EY145734 CBTN10025.b1_A11.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi TTGAGCCGTGCCAATATCAT EST sequence (targeted fragment marked with yellow): AGTGCGCATGCCAAAGGTGTGAAAGTTGTTATGGCCTCGGATTTGTTGGCTTTGACGGTTTTGAAGCCGCCGGGGGAGTTTGGAGCCGATATAGTTGTGGGGTCGGCTCAGAGGTTTGGGGTGCCGATGGGGTACGGCGGGCCCCATGCTGCGTTCCTGGCTACGTCACAGGAGTACAAGAGGATGATGCCGGGGAGGATTATTGGGGCTAGTGTTGATTCGTCGGGTAAGCCCGCTCTTCGTACGGCAATGCAGACGAGGGAGCAGCATATTCGGAGAGATAAGGCGACGAGTAATATTTGCACGGCTCAGGCACTGCTTGCAAACATGGCTGCTATGTACGCCGTTTACCACGGGCCAAAAGGGCTTAAAACCATTGCCCAGAGGGTTCATGGTCTAGCTGGAACTTTAGCTGCTGGTTTGAAAAAGCTCGGGACTGTAGAAGTCCAGGGCCTTCCCTTCTTCGACACCGTGAAAGTCAAATGTTCGAATGCAAAGGCCATTGCTGATGTTGCGTATAAAAACGAAATAAATTTACGGATTGTTGACCAGAACACCATAACTGTTTCTTTTGATGAAACGACCACGTTAGAAGACGTGGACAAGCTTTTCCAAGTGTTCGCAGGTGGAAAACCGGTGACATTCACTGCTACCTCTCTTGCACCGGAGGTCGAGAACTTGATCCCTTCAGGGCTTGTTAGGGAGAGCCCATATCTGACTCAATCGATTTTCAACTCGCACCACACTGAACACAAGCTTTCTAGATACATTCATCAGCTTCAGTCGAAGGATCTTTCATTGTGCCACAGTATG | |||||||||
gi|159595952|gb|EY170071.1|EY170071 CBTI2513.b1_A06.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TTGAGCCGTGCCAATATCAT EST sequence (targeted fragment marked with yellow): AAACACCATCTCAATAACCCATATTTCTTTCTAAAGAAACAAACAAACAAAAAATGTTTAAATCTCATGAGCTCCCCGAATGTATCTACGAACCAAACCAGCCCATTTTAATCCCTCCCAAAACCTCAACTCCTACAAAAACTATATATCTCTCAAATCTTGATGATCAAAAGTTCCTAAGATTTTCAATAAAATATCTCTATATTTTCAGAAAAGCCGTCAATATAGAAACCCTTAAGGAATCTTTGTCTAGGGTTCTTGTTGAGTATTATCCGTTTGCCGGGAGGTTACGAAAGTGCGTCGATAACGACGAAGATGGTAAGCTTGAAATCGACTGCAACGACGAAGGAGCTGTTTTTGTTGAAGCCAAAATGGACTTAAGTGCTGATGAGTTTATAGAGTTTTTTGCGGCAAAGCCAAACAGGTCCTTGAGAAAATTCATGTACATAGTCGATGCACCTAATTTCTTGGATATTCCACCTCTTGTAATTCAGGTGACTAATCTAAGTTGTGGAGGCATAATTTTGTGCACAGTAATTAATCATTGTTTCTCCGACGGTATTGGCACGTCTCAATTTTTACACGCCTGGGCCCGCACGTGCCAATCTATCAATTCTCCCAATCCCACGAATTTACTACCACCAATCCACGACCGCCACGTGTTAAGTCCGCGTACCCCACCACAAATAACATTCCCCCACCCAGAATTTACCAATAATAACCCTAGTAATATCCCACAAACCAAC | |||||||||