miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGAGGTGCAGGTGCAAGTGC
species: Populus tremula x Populus tremuloides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|38594004|gb|CK109679.1|CK109679 N020D06 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N020D06 5' 

TTGAGGTGCAGGTGCAAGTGC
 |.||.|||||||||||.|||
TATTCTACGTCCACGTTTACG

EST sequence (targeted fragment marked with yellow):
GAAGGAAGAACAAGAGATGCCAGTCTCATTGTATATAATACTACTGGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTATATAATACTGCTAATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCTTTTGTTTTGTTCTTGACTCCACAAACAAAATCAACTTCTGTCGATACAGTATGTGGTACAATTAGCTATGGAAACTCATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTTCACTCATATATATATATACAGCAGTGCTGCCTCTTTTCTTTTCTTCTGTCTGTGGTTAATTTGCAGCTTCATGGTGGCAGAAATGTACTGGGAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTTCTTATTAATTAACTATGAGAGCAAATTAATGTGTTTTCAACAACGACAGGCCATGTGTAAAATTCTTTATGCAGGTGCTTGGTGTTTATAGAGATGGTGATGAATTGAAGAATATTACAAGGGTTTTCCAGTAATCTTTGAATTAAGTACTTGGAGGACAGATCTTCCATGATCAATATGCAAGGCGCCTGTGCTCGATATGTAGCTGGATCTCTTGATCTTCCATTTGAAGCTAGGGTTTTCAAGGTAATATATATAGAAAGTACATTCCCTCTCTAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAA


gi|24020602|gb|BU837806.1|BU837806 T105H03 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, 

TTGAGGTGCAGGTGCAAGTGC
||||.||||||| ||| |||
AACTTCACGTCCTCGTCCACT

EST sequence (targeted fragment marked with yellow):
GGGGGAGTCGTCATGATAAACGAAGAAGAAGCTTAGATATCATCGAGCGGAGTCAAAATCAAACCATCACCTGCTCCTGCACTTCAATTTCTTCTTCATCATCTTCTTCTTTGGAGCTTCAAGAGAAACATCAACAACAATGGCTGCTGCTACTGCTATTCTTTGGAATCCTTTAATTCTAACCAGAAATCCTCAAGGACTCCACCTATCTCCAGCGTTGTCTTCTTCTTCTTCTTCTATAAAGCCGTTGGACAAACGCGCCTTGAGTGGTGGTCCTGGAAAACTGCGAATAACTAACTCCATAACCAGAAGCTCACTCACAGTCCAAGCTGCTGCTAATGCTGCTTATAGTGATGGAGGAGGAAGGCCAAGCAATGCAAGCATTTTTGTTGGTGGCTTTGTTTTGGGAGGACTTATAGTTGGTGCTCTTGGATGTGTATATGCTCCTCAGATCAGCAAGGCATTAGCTGGCACTGACCGGAAGGATCTTATGAGGAAGCTGCCCAAATTCATCTATGATGAAGAAAAGGCTCTGGAGAAAACACGAAAAATATTAGCTGAGAAGATTGAACAACTGAACTCGGCCATTGACAATGTTTCCTCTCAATTCCGATCAGAAGATGCCCCAAATGGAGCAAATGTGCATCCTGATGACATTGAAGCTGCGATATGAGCTACCTCTGTCTACGCGGCAGTCTACCTGGTCTCCACTACCAGTAATTTCCATACTGATCTTTAATAGCAGTTGAA


gi|38583529|gb|CK099204.1|CK099204 A056P51.5pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A05 

TTGAGGTGCAGGTGCAAGTGC
.||||||||||||||  | ||
GACTCCACGTCCACGACCTCG

EST sequence (targeted fragment marked with yellow):
CCCTGCTAGCACCACCCACCACAGTGATCAGGATTCAACTTTTGCTCCAGCACCTGCACCTCAGTCAGATGGTTCTAGTACACCAACACCCACACCCAAGACCGAAGTTGTGCCAGCAACTGGATCGCTTCCTGGATTAC


gi|3855461|gb|AI164176.1|AI164176 A056P51U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequ 

TTGAGGTGCAGGTGCAAGTGC
.||||||||||||||  | ||
GACTCCACGTCCACGACCTCG

EST sequence (targeted fragment marked with yellow):
ACCACAGTGATCAGGGATTCAACTTTTGCTCCAGCACCTGCACCTCAGTCAGATGGTTCTAGTACACCAACACCCACACCCAAGACCGAAGTTGTGCCAGCAACTGGATCGCTTCCTGGATTACCTCCAGCAAGCGGCCCGGTTGGAAGTTTTTCTTTTTCTTACTCAGTCAATCCATCAGCCACTCTCATGATCGCAGCTGTGCTACTCTTGTTTGCCATGACCTCCATTCCATTGTAGTTTTNCATGAACTGCCTGCTAGATGGTTCGGTTGGTGTGGTTGCTGCTGGGACCGCAATCTATGTATATG