| mature miRNA: TTGAGGTGCAGGTGCAGGTGC species: Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161935490|gb|DB877261.1|DB877261 DB877261 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTGAGGTGCAGGTGCAGGTGC EST sequence (targeted fragment marked with yellow): GGGTGTCCGTGTTAACCACACGTCATTCCCAATTTTCTGGTTATTTCCGGCAGCAACCGACGCATCAACTTCTTCTGAAAAGGAAGCAATGGATTTTTTGCTTGAGGGAACAAATGAGGACACATCTGAATGCCATTTTGATGACAAGGACATTCAGAGATGCCCATTTTTGAGGAACATCAACAAGCCAACCAGCTTTTCGTTCTCTCCTGTGAATTTCCTTAATCCTGTACAAGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCGAATTTTGGTATGGCGTTTAAGCTCTTTCATGGCAAGGATGGGGTTGTCCCACTCTCAAATCAGTCCAGCTTTCATGATAACACTTTGGAACCTGAGCCTGCACCTCAATTCAATCCCTTAGCTGCAAAAGCTGCCACCATCAGTCTCTCCGCATTTGGTCCTGGTGGACCATTTGGCTTTGGTTCCTTCAACGATAAGTGGAAGAATCAGAAAAAGAAATCAGAATCAGCTAGCAAGAAAGAACCATCTTCTCAGAAAGGAAACACATCAAAACATGAGGCAATGGGAAACGAATGGTTGGAAACAGGCAACTGCCCCATAGCTAAGTCCTATAGAGCTGTGAGCCGTGTACTCCCTCTAGTAGCATC | |||||||||
gi|161928880|gb|DB882975.1|DB882975 DB882975 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTGAGGTGCAGGTGCAGGTGC EST sequence (targeted fragment marked with yellow): ACGGGAGTCGTCGTGATAAACGAAGAAGAAGCTTAGATATCATCGAGCGGAGTCAAAATCAAACCATCACCTGCTCCTGCACTTCAATTTCTTCTTCATCATCTTCTTCTTTTGGAGCTTCAAGAGAAACATCAACAACAATGGCTGCTGCTACTGCTATTCTTTGGAATCCTTTAATTCTAACCAGAAATCCTCAAGGACTCCACCTATCTCCAGCGTTGTCTTCTTCTTCTATAAAGCCGTTGGACAAACGCGCCTTGAGTAGTGGTCCTGGAAAACTGCGAATAACTAACTCCATAACCAGAAGCTCACTCACAGTCCAAGCTGCTGCTAATGCTGCTTATAGTGATGGAGGAAGAAGGCCAAGCAATGCAAGCATTTTTGTTGGTGGCTTTGTTTTGGGAGGACTTATAGTTGGTGCTCTTGGATGTGTATATGCTCCTCAGATCAGCAAGGCATTAGCTGGCACTGACCGGAAGGATCTTATGAGGAAGCTGCCCAAATTCATCTATGATGAAGAAAAAGCTCTGGAGAAAACTCGAAAAATATTAGCTGAGAAGATTGAACAACTGAACTCGGCCATTGATGATGTTTCCTCTCAACTCCGATC | |||||||||
gi|161906893|gb|DB879236.1|DB879236 DB879236 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTGAGGTGCAGGTGCAGGTGC EST sequence (targeted fragment marked with yellow): GCAGCTCTTCATTTCCTCCACCCCTTGTGAAATTTCTTCCTCTTTTACTTTCTCCTAATTTACCGAGGTTGTCTGAAAATTTAGACGAGAAAGAAAGATGCCGGGATCGGAGACAGGAGTGATGACAAGCAGGGAGCCTTTTAGCGTGACAGGACTCCAACAAAAAACAGCGGTACAATCACAGCCGTTTATACAAAACATGCGTTTAGACTTCGGTACTGACGGTACTGCTGTTTACAAACCGATATCCACCGTCACTACCACTTCCGCGGTGTCACCTACCTACCCGCCTGGAGGAGGGGAAGGACCGGCTGGTGGGGCGGTGGTATCTCCTCACGGGATTGATGTGAATATGGGAGGAGGGATTGGAGGAGAGTCAATGAAAAGAAAGAGAGGGAGACCAAGGAAGTATGGGCCAGATGGCACTATGGCATTAGCTCTTGCATCTGCACCTCAGTCTGTTGCTGTAACCCAACCAACAAGTACAGCCACTGGAGGTGGTTTCTCTTCTCCTCCAGCTCAGACTCACCCTCTTGTTTCTCCTCCTCCTCCTCCCCCACCTCCTGGATCTGATATTGGTGTCGTTGGTGCTGCTGGTGTTGTTTCTTCTTCCCCTGTCACTC | |||||||||
gi|161921624|gb|DB905107.1|DB905107 DB905107 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTGAGGTGCAGGTGCAGGTGC EST sequence (targeted fragment marked with yellow): TGATCAGGGATTCAACTTTTGCTCCAGCACCTGCAACTCAGTCAGATGGTCGCAATACACCAACACCCACACCCAAGACCGAAGTTGTGCCAGCAACTGGATCGCTTCCTGGATTACCTCCGGCAAGTGGCCCAGTTGGAAGTATTTCTTTTTCTTTTTCAGTCAATCCATCAGCCACTATCATGATCGCAGCTGTGCTACTCTTGTTTGCCATGACCTCCATTCCATTGTAGTTTTGCCATGAACTGCCTGTCTAGATGGCTTCGGTTGGTGTGGTTTGCCTGTCTAGGATCGCAATTCTATGTTGTATGTAACCTTGTTAATTTTTATTTCTACCACATGAACTGATTTATGGATGCGGGCAAATGTGGGCTGTCTCTGTGCCTGGCTGGTATTTTTCATCTACTCATTCGCTGTATTATGTACTGCAAGTCGAGGCATGGGCAGTTCTTTTGCGACACATTCTTTGCTTAAATTATCCAGAGCTCTATGGTATTTCCCC | |||||||||
gi|161910299|gb|DB880478.1|DB880478 DB880478 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTGAGGTGCAGGTGCAGGTGC EST sequence (targeted fragment marked with yellow): GAGATCTGACTCACTCTGAACACATAAAGAGCAAACCGAAGTGAGTTTTTCTTTCGTTTAATTCCATCCATGTCCTGAAAACCAAAACAAGGTTTCCCCCTTATTTTCTTTGTTTCGCAGAGATGAAGAGAATGAGAGATGATATTTTCTCTGCCTCAGCCTCAGCCCCAGCGCCAGCCCCTGCCCCTCAATTTAAACGGCCCTTAACTTCGACACGTGGAGAATCCTATGGGCAAACACAAATCCCTGGCGGCGGTGGCGGCGGAGGTAGCGGTAATTCGCAGAAACTAACTACCACCGACGCCTTACAATATCTAAAGGAAGTAAAGGACATGTTTCAAGACCAGAAGGAAAAATATGACATGTTCCTCGAAGTCATGAAAGATTTCAAGGCTCAAAGAACTGACACTTCCGGTGTCATTGTAAGAGTAAAGGAGTTATTCAAAGGTCATAATAACTTGATATTTGGATTCAACACCTTCTTGCCCAAGGGATATGAAATAACCCTAGATGAGGATGAGGCAGCTCCGCCAAAGAAAACTGTTGAATTTAACCAAGCTATCAATTTTGTAAACAAAATAAAGAAACGTTTCCAA | |||||||||