| mature miRNA: TTGAGTTCTGCAAGCCGTCGA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188324474|gb|EY719831.1|EY719831 CS00-C3-702-107-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD TTGAGTTCTGCAAGCCGTCGA EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGGACGCGTGGGCGAAGGAGGCTCCAGTAGGCTTCACCCCACCGCAGCTAGACCCAAACACCCCATCCCCTATCTTCGGAGGAAGCACTGGGGGATTGTTGAGAAAGGCCCAAGTTGAAGAATTCTATGTCATCACATGGGAGTCGCCAAAGGAACAAATCTTTGAGATGCCGACTGGTGGAGCTGCCATTATGAGGCAAGGTCCTAACTTGCTTAAGTTGGCTAGGAAAGAACAGTGCTTGGCTCTTGGTACTAGATTGAGATCAAAGTACAAGATCAAGTACCAGTTTTACAGGGTCTTTCCTAATGGTGAGGTTCAATATCTTCACCCCAAGGATGGAGTTTATCCTGAAAAAGTGAACCCTGGTCGCCAGGGAGTGGGAGTGAATTACAGATCAATTGGGAAGAATGTCAGTCCCATCGAGGTTAAGTTCACTGGGAAGCAAGTCTATGACTTGTGAGATGCAGATGATTGTTTAATCTCCTTGTTTTGTGTGATTGTAAATTCTACTGTTTCTTTACTTTTCTTTTTTTAAATGTATCTTTTTAAAAATATTTTCAGGTGCTTAACTGTCCCCTAGAGAAAAAAAAAAAAAAAAAAAAATAAAAAAGGGGCGGGCCGGCTCTAGAGGGACCCATGCTTAAGTTCCGCGTGCTTGTGGAGTTCATACGCTCTTCCTATAGGGGCCCCTGATATCAATTCAATGGGCCGGGCGTTTTTAACCCAGCCCGGGATGGGGAAGAAACTGGGGGGCTTGCAGAATTTAAGGCTCCCTTGGACAAGAGGCACCCCCCATTTTCACGCATGGGGGGAAGAAAAACATGAAAGGAGCCCCCAGCAAAAATAACCCCCTAAACACTCACATGTAGACACCAACACTTAAAAAGAATAAAAAGGGAAAAACTG | |||||||||
gi|188352128|gb|EY684640.1|EY684640 CS00-C2-003-015-F02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ TTGAGTTCTGCAAGCCGTCGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAGAAACTCGACGGCTTGCAGAACTCAATCGACGGGGTGATGGCTATGATGCACGGAATGACGCCTCTGTCTGGGCTCTGCAGTCATCAGATTATCCAGAACAGGAATCATCAGATTATAATGGTTCTAGTTATGGTAGCGGTTTATTGAATTCTCAATTGGACGGTGAGCAGGTCGTTGGCCAGTTCAATTCACGGAGGGATTTTCAGACTGAATACTCTCCTGAGGAAACTGTAGAGACCACTCCTGACTTCTTCACATCAAAGTCAGATGAAGGAGTTTACATGGAGGGTGGCAGTGACGCGAACACTGGAACCGAATCCTTCATTGAATGGATAGATGTACTCTTTGACTATTAATAGTACTTCAGTGGCATATATGTTAAGGACCATCAAATCCTCAAGGAGGGTATTAGATTATTACGGATGTCGTAATATAGCTTCACTTATGGTGTATTGTAATCCAAACTTTGTGCTCTTTGAGAGTTAGTTCTTTAGGGCACTTGGATGCTTTTCTCTGTCGTATGTAATATCTACAAGTAATATTGCTTCAAAAAAAAAAAAAAAAG | |||||||||
gi|188290775|gb|EY703285.1|EY703285 CS00-C3-701-017-H04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD TTGAGTTCTGCAAGCCGTCGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGATCGTCGAAGATTCTGTTCAGGCAGAAACTCGACGGCTTGCAGAACTCAATCGACGGGGTGATGGCTATGATGCACGGAATGACGCCTCTGTCTGGGCTCTGCAGTCATCAGATTATCCAGAACAGGAATCATCCGATTATAATGGTTCTAGTTGTGGTAGCGGTTTATTGAATTCTCAATTGGACGGTGAGCAGGTCGTTGGCCAGTTCAATTCACGGAGGGATTTTCAGACTGAATACTCTCCTGAGGAAACTGGAGAGACCACCCCTGGCTTCTTCACATCAAAGTCAGATGAAGGAGTTTACATGGAGGGTTGCAGTGACGCGAACACTGGAACCGAATCCTTCATTGAATGGATAGATGTACTCTTTGACTATTAATAGTACTTCAGTGGCATATATGTTAAGGACCATCAAATCCTCAAGGAGGGTATTAGAGTATTACGGATGTCGTAATATAGCTTCACTTATGGTGTATTGTAATCCAAACTTTGTGCTCTTTGAGAGTTGGTTATTTANGGCAGTTGGATGCTTCTCTCTGTCGTATGTAATATCTACAAGTAATATTGCTTCACTTATTTTATTTTATTTTACTTAAAAAAAAAAAAAAAG | |||||||||
gi|188346536|gb|EY712260.1|EY712260 CS00-C3-702-017-C06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD TTGAGTTCTGCAAGCCGTCGA EST sequence (targeted fragment marked with yellow): GAGTGGGTTATACACGAGATAGCTGTTGAAAATAGCCCTGACTTTGAGAAGGATTTTGTTGTGTGTCGCCTTGAAAGAAAACGGGAGAAGAAGACGCTTGGTGTTGTTTCCACTAAGAGAAAACGGGAGAAGAAGACGCTTGGTGTTGTTTCCACTAAGAGAAAGCGGGAGAAGAAGCTTGGTGTTTCCACCAGCGATGGTGATCAATCTTGTCAAAATTTAACTTTTAAAAAAAGTCATGTTGCAGAAGATACTAATAGAAATCATGTTGCAGAGAAAGTAGATTTGGTTTCTATTGCAGGAAATATTGTTTTGGTCCCTGAACTTCAGGTAAGGGACCATTCGATTTCTTATTACAGAAATCATGTTGCAGAAAAAATCGTCGAAGATTCTGTTGAGGCAGAAACTCGACGGCTTGCAGAACTCAATCGACGGGGTGATGGCTATGATGCACGGAATGACGCCTCTGTCTGGGCTCTGCAGTCATCAGATTATCCAGAACAGGAATCATCAGATTATAATGGTTCTAGTTATGGTAGCGGTTTATTGAATTCTCAATTGGACGGTGAGCAGGTCGTTGGCCAGTTCAATTCACGGAGGGATTTTCAGACTGAATACTCTCCTGAGGGAACTGTAGAGACCACTCCTGACTTCTTCACATCAAAGTCAGATGAAGGAGTTTACATGGAGGGTGGCAGTGACGCGAACACTGGAACCGATCCNTTCATTGATGGATAGATGTACTCTTTGACTATTAATAGTACTTCAGTGGCATATATTGTANGGACCATCAATCCTCANGGAGGGTATTNAGATATACGGATGTCGNATATAGCTTCACTTATGGGTATTGTATCCAACTTGGGGCTCTTNGAGAGGTAGTCTTTAGGCACTGGATGCTTTCCTGGCGATGGATACT | |||||||||