| mature miRNA: TTGATGATGCTGCAGCGGCAA species: Vitis shuttleworthii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|51575591|gb|CV093427.1|CV093427 FAMU_USDA_FP_1450 Vitis shuttleworthii L., grape Vitis shuttleworthii cDNA clone JLVs079_B09 TTGATGATGCTGCAGCGGCAA EST sequence (targeted fragment marked with yellow): AGATACTATTAGCTTTTCTCTTCACATTCTCTCATCTTTTCAAGTTTTTGATTGTGGGTACATGTATAGAGTACCGTAGAATAGCTTTTCTACCAAGTGGGTCTTGTTTATTTCATAAGCTGAGATATGGTTTTGAAGCGTTCTGCTGTCCTTCCTTGCATTTGCCTTTACTTTTTCCTTCATAGAATGTGGTCTTGAGGTTAGGGCTAGGCTCCTTCTTCCTTTACATCTCTTTTTACTCGTTTTCTTTCTTTATTCCTTTACTTTTGCATGGATTCATATGATGAAAGAAGATCTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCACACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTG | |||||||||
gi|51575587|gb|CV093423.1|CV093423 FAMU_USDA_FP_1446 Vitis shuttleworthii L., grape Vitis shuttleworthii cDNA clone JLVs079_B05 TTGATGATGCTGCAGCGGCAA EST sequence (targeted fragment marked with yellow): ACTCCAATGCCTATCTTGACATGGCCGGTGTCAAGGACAGATCGAAAATTCTGTTGGTTGAGGACCCTATTAGCCAGGAGAAGCGATATCTCGAGATGCGAAGAAATGCTAAGATGGAAAAGGCCTCAAAGTCCATCTCCGAAATCAGTTTGGAGGTTGACAGGCTCGCTGGCCAGGTATCAGCTCTTGAATCGGTTATTTCCAAAGGTGGTAAAGTTGCAGAAAAAGTGATGTTGAATCTCACCGAGTTGTTGATGAATCAGTTGATTAATTTGGACAGTATAATCGCGGATGGAGACATTAAATTGCAGAGGAAAATGCAGGTGAGAAGAGTGCAGAAGTATGTCGAAACTCTAGATATGTTGAAGATAAAGAACTCGACCCCTGACAGCGATGGAGATCAAATGCCGATGCAGCATCAGCAGAAGCGACAGTCTAATGGGCAAAGACCACCACTAGCAGCGCCACCACTAGTTCAACAGCTGCAGCAACCA | |||||||||
gi|51580149|gb|CV097985.1|CV097985 FAMU_USDA_FP_6008 Vitis shuttleworthii L., grape Vitis shuttleworthii cDNA clone JLVs146_C10 TTGATGATGCTGCAGCGGCAA EST sequence (targeted fragment marked with yellow): GTTTGCAGCAGCAGCAGCATCAGCAGAAGTGGGAAGATCCGTCTGTGCTAGATTACAGTGTTAGGATTGAACCAGCTTTCCAGGAATTCAACCAGACTTCTGCAACCCCATCATCTCTTCCTTGCAACCCTAATAGTCAAATCAAAAACTTGAACAGAGAAGATTGTCAGATGAATGAGATGCTAGAACCCAATAGAATCCAAGACTGGGATCCAAGAGTGATGCTTAGCAATCTCTCTTTCCTGGAACAGAAGATACATCAACTCCAGGATTTAGTCCATCTGATTGTTGGTCGGAGAAGCCAAGTTTTGGGTCGAACAAATGAACTTGTAGCTCAGCAGCAGCAGCTTGTCACTGCTGATCTCACTTCTATTATTGTTCAATTGATCACGACTGCTGGTACTCTTCTCCCATCTGTGAAGAATACCCTTTCGACTGCTAGTCCTTCTGTTGGACAGCTTGGGCAGCTTGGTGGAGTACTGTTT | |||||||||