| mature miRNA: TTGCCCTTTTTAAGCAGGGC species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34989685|gb|CF563602.1|CF563602 1115085G08.x2 C. reinhardtii CC-1690 (mt+), Stress III (normalized), Lambda Zap II Chlamydomo TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): CTGGCCGTGCGCCGTGCCTGCTACGGTGTGCTGCCCTTCGTGATGGAGAGCGGCGCCAAGGGCTGCGAGGTCATTGTGTCCGGCAAGCTCCGCGCTGCCCGTGCCAAGTCCATGAAGTTCAAGGATGGCTACATGGTGTCTTCGGGTAACCCCGCCAAGGTGTACATCGATGGTGCCGTGCGCCACGTGCTGCTGCGCCAGGGTGTCCTGGGTAAAAAGGTCAAGATCATGAAGGAGTGGGACCCTACCGGCAAGCGTGGCCCTCGCACTCCTCTGCCCGATGTGGTCAAGGTGCTGGAGCCCAAGGAGGAGGAGGTGTACCAGGAGAAGCCTTACATCGGCAAGGAGGAGCTGTAAACGGAGTTCGCACGCACGATGATGAGCAAAAGCTGTTAGCTAGTAGCGCGGCTTCTGCGAGGAAGCCGTGGCTGGAGTTGGCAGCGCTGTTGTCGCGTCGGCTTGGGTCTGCACCTGCCGCTC | |||||||||
gi|14242094|gb|BG860910.1|BG860910 1024073E08.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): CTTCATATACGCATCCTTCACGCAGCGATATAAACATCAAGCACAAGCAAATAGCAATCGCGTGAGAACACAGACGCATAGCGAACGAGCATCGGCACCGAGGAGGCTCGCCGCAGCCGAAAGGCTGAAGTGGCGTTCATCTAAACCACCCATACCAGAAGGTCTACAACCATGAACAACAACAAGCTAGACGAGGCGGCCATTTTGGCCGGATGCAAGGGTGTGTTCAGCAAGACCAGGTACATCACGCACACTGGTCAAGAAGGGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGGCAAGCAACTAGCGACCGCCCCGCTCAAAGAGGGCAAGACAGTAGACGTCTACTTCACCAAGAAGCACGACTGGATTAGTGACAAAGACCCTTACGTCGACCGCATTCGCTACAAGGACTCCAACCAGGAGAAGAAGAAGGGTTTGTACACCTCAGATTTTTCCAAGCGTGATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCGGGCTAGAAGCGTCGCAATTGCGGACGTCACGCAAGATGGAGCCCGAGGTGTTCATGTACGACCAGGTGTTTGAGAAGGAGGACN | |||||||||
gi|161823914|gb|FC106860.1|FC106860 CACW6670.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDN TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): CCTTTACGCAGAGATATAAACATCAAGCACAAGCAAATAGCAATCGCGTGAGAACACAGACGCAGAGCGAACGAGCATCGGCACCGAGGAGGCTCGCCGCAGCCGAAAGGCTGAAGTGGCGTTCATCTAAACCACCCATACCAGAAGGTCTACAACCATGAACAACAACAAGCTAGACGAGGCGGCCATTTTGGCCGGATGCAAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGTTTGCTGGCAAGCAACTCGCGACCGCCCCGCTCAAAGAGGGCAAGACAGTAGACGTCTACTTCACCAAGAAGCACGACTGGATTAGTGACAAAGACCCTTACGTCGACCGCATCCGCTACAAGGACTCCAACCAGGAGAAGAAGAAGGGTTTCTATACCTCGGACTTTTCCAAGCGTGATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAGGGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTGGGCTAGAAGCGTCGCAATTGCGGACGTCACGCAAGGTGGACCCCGAGGTGTTCATGTACGACCAGGTGTTTGAGAAGGAGGACCCCGGCTTTGACGGCGCCAGCCGCACACACCGTGACACCAAGAACAAAACCATGCTGTCACGCGATCGCGCCAACGGCGAGATGATGACCACCACGGCATTGGCCTTCCAGGCGCCGGACGAGCACCACAAGCCCGAGCACGCACGGAAGCCGCTGGTGCGCGAGACGTTCTTCCGCA | |||||||||
gi|15371954|gb|BI531380.1|BI531380 1024113D06.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): TTTTTTCATTGATCGGGCTTACAACGAAGCCATGGAGCACCACCGTTGCCGCTGCTCCTGCAGCCAGCTGGCTAGCGAGCCTCGCCACCCGCCGATAGACCCGCCAAGCCGGAGAGCAGCACACCCAATTCGCAAGTTCATTAGCCGGCCCGTGAAGTGACCGTGCCCGCAATGCGTACCGACAAATACTTGACACCAGTGGACACGCAAACCTGCTTGATACAAACCATATGATCTTAGTTTTCGGTAGAAGCAAGGATGCATTGTCGGCTTGTCGGTTTCATTCTGTACTGCAAGTATCGCACCACGTGGATGCCATCACCATGGAGAAAACCTCAAACACAGTGCATTTTGTCGCCGCTCTACTACAAATTCACCAGCCACACAGAAGCATGCCTGCTATGACTGACAGCAAGGTGCCCGGGCCCGCAGCAGGCAGCGCTCCGCGACTCCCCCGCATCGATTTAGACCGGCACCACGCCGCGTGGTGCGCAGCCAGATCGTCACCCTGATTAAAAAGGGCAACAGAGCCAGGATCCCCGTAATGATTGCCGGCACTCATCCGGCACCATCCCAGCCGCTGGCGGAGGCAGTTGCGGTTGAGGCGCGCCCCTGAAGCCGGCACAGTGGCTGCTGC | |||||||||
gi|23365278|gb|BU653098.1|BU653098 1112104D10.y1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): GCACGAGGCTAGGGTTGCGCTCCAGTCGGTGTCTTGTGAGCGTTGATTCCTCGCTGAAAGCTTTATCTTGAGCACCATACTAGTTGAGTCGTGATTGCATTCGCAAGGGCAAAATAACCCGAGGCTTGTGACTACAATCAACAAACGGCAATGCAGTCGCGCCAGTGCTTGAACCGCAAGGCCAGCGGCGCGCGGCCCTGCGCTAACTCGCGCAGCCTCACAGCTCGCGTACTCGCTACGGCCGCGCCTGTCGCGCCGTCCGCCACACCCGCCTCCGCCCCCCTGCCCCTCCCCGATGGCGTTGGCGAGCACAGCGGCCTGAAGCACCTGCCCGAGGCCGCCCGCACTCGTGCGCTCGACAAGAAGGCCAACAAGTTTGAGAAGGTTAAGGTCGAGAAGTGCGGCTCGCGCGCCTGGAACGACGTGTTTGAGCTGTCTTCCCTGCTGAAGGAGGGCAAGACCAAGTGGGAGGACCTTAACCTCGATGATGTCGACATCCGTCTCAAGTGGGCCGGCCTGTTCCACCGCGGCAAGCGCACCCCCGGCAAGTTCATGATGCGTCTCAAGGTGCCCAACGGCGAGCTCACCGCCGCGCAGCTGCGCTTTCTGGCCTTCTCCATCGCGCC | |||||||||
gi|8287317|gb|BE024876.1|BE024876 894006F05.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): TAAACATCAAGCACAAGCAAATAGCAATCGCGTGAGAACACAGACGCATAGCGAACGAGCATCGGCACCGAGGAGGCTCGCCGCAGCCGAAAGGCTGAAGTGGCGTTCATCTAAACCACCCATACCAGAAGGTCTACAACCATGAACAACAACAAGCTAGACGAGGCGGCCATTTTGGCCGGATGCAAGGGTGTGTTCAGCAAGACCAGTTACATCACGCACACTGGTCAAGAAGGGAAGGCTGAAGAGTATGAGAAGAAGGGCGGCCACCGCTCTGCGCTTGCTGGCAAGCAACTCGCGACCGCCCCGCTCAAAGAGGGCAAGACAGTAGACGTCTACTTCACCAAGAAGCACGACTGGATTAGTGACAAAGACCCTTACGTCGACCGCATTCGCTACAAGGACTCCAACCAGGAGAAGAAGAAGGGTTTCTACACCTCAGATTTTTCCAAGCGTGATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGGGCGAGAACACGCATGCAAA | |||||||||
gi|23365786|gb|BU653606.1|BU653606 1112107G06.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): TTTTTTCATTGATCGGGCTTACAACGAAGCCATGGAGCACCACCGTTGCCGCTGCTCCTGCAGCCAGCTGGCTAGCGAGCCTCGCCACCCGCCGATAGACCCGCCAAGCCGGAGAGCAGCACACCCAATTCGCAAGTTCATTAGCCGGCCCGTGAAGTGACCGTGCCCGCAATGCGTACCGACAAATACTTGACACCAGTGGACACGCAAACCTGCTTGATACAAACCATATGATCTTAGTTTTCGGTAGAAGCAAGGATGCATTGTCGGCTTGTCGGTTTCATTCTGTACTGCAAGTATCGCACCACGTGGATGCCATCACCATGGAGAAAACCTCAAACACAGTGCATTTTGTCGCCGCTCTACTACAAATTCACCAGCCACACAGAAGCATGCCTGCTATGACTGACAGCAAGGTGCCCGGGCCCGCAGCAGGCAGCGCTCCGCGACTCCCCCGCATCGATTTAGACCGGCACCACGCGCGTGGTGCGCAGCCAGATCGTCACCCTGATTAAAAAGGGCAACAGAGCCAGGATCCCCGTAATGATTGCCGGCAATCATCCG | |||||||||
gi|34989950|gb|CF563867.1|CF563867 1115087F11.x2 C. reinhardtii CC-1690 (mt+), Stress III (normalized), Lambda Zap II Chlamydomo TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): GCCACCCCAACTCGCTGCTCACGCTCCAGGAGTACCTGATGGACTACGCCGACCCCGTCCTGCGCAAGAAGGGCGAGCAGGTGATTGCGCGCGAGATGGGCCCCGACGCCTCGGAGCCGCTGTCGGCGCAGAGCCGCAAGCGACTGGAGCGCAAGATGAAGCAGGTGCTGGAGGGCGAGCACGACGTGTACCTGTAAGCCCTGTTAACGACGAGGGGTAAAGCGGCGGCGGCCGCTCGTGGGGCGTGAAGGAGCTGGTGGAGCAGGAGAGGAGAGGGCCTGTCGCCGCGGAGGATGCGGCGAGGGGCCTCGGAAGCACCGGCCGGGCGGTAGCGTGCTGCAGCGGCTGGCTTGCGGCGAAGGAGGAGCTAGCGGCGACAGCTGGCTTGGGCTTACACGGACATAACCGCGGGCACACGTCCGCGCGTTTGGACGGATCTTCTCGGCTGTAGGTTCATGTGGAGCAGAGCACAAACAACCGAACTGCGTGATGCGTAGTGTGGAGATTCCATTCCGCGCGATTGGCGTATTGAGCGATACCGGTGTTGGTTGTGTTTGCTCCGACGCTCTCTGACTGGCGAGACGTGTGCAACTTGAAAGAGGCACAGGGCGACTGTTGGTGAGGTTTTGACTGCGGCTTGAAAGGGGCGTTTGAGGGATATGAGCATCT | |||||||||
gi|161793120|gb|FC080970.1|FC080970 CACW12223.rev CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TTGCCCTTTTTAAGCAGGGC EST sequence (targeted fragment marked with yellow): AGTGCCAAGAAGTAAGCCGCGGGCTATCATCGCTTGACAGACAGCTAGCGGCTAGCTGCATGGACTTGTGAAGTCCTAGAAGGCGAGGTGTCGCGGCAGGCAGGCGGCAGTGGTTTCTGGCGTTTGAGGTGCGGATTTTGCATTGTACCGCCGTGGAAGGTCATCTTGTGTTGTGCGGAGTTAGTGTGACGTTTTAAGGGTTTTCGTTGTATGTGTAGCCTTGGAGCTGGGGGCAGGGGAAGGGGTTTGTTGTGCCCATGCCCTTGTGCCCATGGGACTGTACGCGGTTGTTATTTATCCCCAGACCGATTGCTATGCGTGCACGCATGTTTGTGCCTGCCACTGGTGGCTGCCTTGGGCTGGCTTTCAGTGTGCTTTTGTGCGTGACAGAATGGAGAAACTTGTGCATGTGCTAAAACCTCGATGTTGTGGGGCCGTCCACGCGCTTGGGCAGTGGTTCAGCTGACAATGCTGGGGATAACGTTGGGGAGTATTTGTTATGTTGTATAGGCCCTGTTGAAAATGGGCACTACAAGAGGATACCGTATATTACATAGCAATGATGAGCGGGCGCAGGCCCATAAACCGGAAGGTGGCTGATGCGGTTAACATTGCCTGTTGGTGGGCCCCTGTAAAGCAATT | |||||||||