| mature miRNA: TTGCTGCCTCAAGCTTGCTGC species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270448944|gb|GT829278.1|GT829278 CCYO12029.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): GGTTACACAGCTGCTGGGTTCAGTGGCCGTATGCCGTGTGCAGAGCTTGCAGACAGCATTGCTCAATGTGGTCGTAGAACGCTTGAGACAGCAATATCATTTGTCAACCAGCATCCTTTGTGGGATGCTAAGGTTGTATATGGTGATACTGACAGTATGTTTGTTCTTCTAAAAGGGCGTTCCAGGGAAGAAGCATTCAGAATAGGGAAGGAGATTGCCTCTTTAATAACTGCGATAAATCCTGATCCAGTCACATTAAAGTTTGAGAAAGTGTATCATCCTTGCTTTCTTCTTACAAAGAAGAGATATGTTGGCTATAGCTATGAAAGTCCTGAACAGAATGAGCCAATCTTTGATGCAAAAGGGATTGAGACTGTTCGGAGAGATACATGCCCAGCAGTTGCAAAGATTTTAGAACGGTCTCTTAGAATAATGTTTGAAGAGCAGGACTTAGTCAAAGTTAAATCATATTTGAGCGCCAATGGACACGTATATTATCAGGAAAAGTTTTGATTCAAGACTTCATTTTTGCAAAGGAGGTTCGTCTAGGTACCTACAGTTCAAGGGCTTCCACCCTGCCACCTGCAGCAATTGTTGCAACAAAAGCAATGCTGTCTGATCCTAGGGCAGAACCACGTTACGGAGAGAGAGTGCCGTATGTTGTTATCCATGGGGAACCAGGCGCTCGTCTCGTTGATATGGTTATTGATCCTTATGGCCTGCTAGAAGTTGGATC | |||||||||
gi|78018152|gb|DV486539.1|DV486539 5504_B09_D18RZ_077 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACGCGTCCGAACCGATCAGGCGGCTGTCGCCTGTCGCTAGCTGCTAGCTCCTTCTTTCTTCTTCCGCTCAAAAAAAAAAAGCTCCTTCTTTCTTCTTTCTCCTTCAATCGATCGGTCGGTCGATCTTGTAGCTCTGCTATTGAATCAATGGCTCACGGCAAGAGGTCGAGGCAGCAAGCTGAGGCGGCGGCGGCGGGGGTCAGCCTGCTGGACCTGGACAGCGGCGACATGGCGCGCATCCTGATGCTCTTCTCCGGCCACAACCACCAGCACCACATCGAACAACACGGCTTCGCGGCGCCGTCGTCGTCGCCGGAGCGGGTGTTCGAGTGCAAGACCTGCAGCCGCCAGTTCCCGTCCTTCCAGGCGCTGGGCGGCCACCGGGCCAGCCATAAGAAGCCGCGCCTCGCCGACGGGGCCCAATCCGACCCGCCCAAGCCCAAGGTGCACGGCTGCTCCGTCTGCGGCCTCGAGTTCGCCGTCGGACAGGCCCTCGGCGGCCACATGCGCCGCCACCGGGCCGCCGTGGCCGCGGATGGTATGGGCCTCGGGCTTGGGCTTGGGCTTGGGCTTGGCCTCGGGCCGAAAGTCGACAGCGGCAAGAAGACTACGCACGCGGCCGAGCTGGTGCTCGACCTGAACGTGCCGGCGTTGGAAGAGGAACCGGCGGCGGTGGGCGTGGATCC | |||||||||
gi|270453852|gb|GT836315.1|GT836315 CCYO16745.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): GATTCAGTTCAGAAAGCGGTGGGTGACAAGGTGGTTAATCAGCTGGACAAGTCTGTTAGTGCAAAACTTGAAGCTACGCTTGCTAGGCAAATCCAACTGCAGTTTCATACATCTGTAAAACAGAATCTTCAGGATGCTTTACGCACTAGCTTTGAGTCATTGCTCGTTCCAGCATTTGAACAATCCTGTAAGACAATGTTCGAGCAAGTGGATAGTGCATTCCAGAAAGGAATGTCTGAGCACGCTGTTGGTATTCAGCAGCAGGTTGAGGCAGCACATACTCCATTGGTGTTAACTTTAAAGGAAAGCATCGCTTCTGCCTCGTCAATCACCCAGAGTGTTACATCAGAGTTACTTGATGGTCATCGCAAACTTTTGGCACTGGTTGCATCTGGGAACTTCAAGGCACAGAATACAAATGTTTTGCAGCCCAACAATGGCCCTATCACTGGTCCCCCAGAGGTTGAGGCTCCATTAGACCCAATGAAGGAGCTGGGAAGACTGATATCTGAACGCAAATTTGATGAGGCATTTACTGTGGCGCTTCAAAGAAGTGACGTCTCCATCGTGTCTTGGCTATGCTCTCAGGTTGATTTGCGTGCATTATGTACAATGGTCCCAGTCCCTCTAAACCAGGGAGTCCTTCTAGCCCTACTACAGCAGCTGGCAGTTGATATTGGCACCGAGACATCCCGGAAGATTCAGTGGATGACAGATGTTGCCATGGCAATCAATCCCGACAGACCTGGTGATTGCCCAGCACGTCAGCC | |||||||||
gi|78020921|gb|DV489308.1|DV489308 5652_H12_O24Z_082 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clone TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): CCTCATAAAGGGTTCGAGCAAGTGGATAGTGCATTCCAGAAAGGCATGTATGAGCACGCTGTTGGTATTCAGCAGCAGGTTGAGGCAGCACATACTCCATTGGTGTTAACTTTAAAGGAAAGCATCGCTTCTGCCTCGTCAATCACCCAGAGTGTTACATCAGAGTTACTTGATGGTCATCGCAAACTTTTGGCACTGGTTGCATCTGGGAACTTCAAGGCACAGAATACAAATGTTTTGCAGCCCAACAATGGCCCTATCACTGGTCCCCCAGAGGTTGAGGCTCCATTAGACCCAATGAAGGAGCTGGGAAGACTGATATCTGAACGCAAATTTGATGAGGCATTTACTGTGGCGCTTCAAAGAAGTGACGTCTCCATCGTGTCTTGGCTATGCTCTCAGGTTGATTTGCGTGCATTATGTACAATGGTCCCAGTCCCTCTAAACCAGGGAGTCCTTCTAGCCCTACTACAGCAGCTGGCAGTTGATATTGGCACCGAGACATCCCGGAAGATTCAGTGGATGACAGATGTTGCCATGGCAATCAATCCGACAGACCTGGTGATTGCCCAGCACGTCAGGCCTATCTTCGATCAAGTCTACGCCAAATTGGCGCACCACCGATCACTTCCCAGCACCAGTCCATCAGATAGCAGCAATCTCCGCTTGCTCATGCATGTGATTAACTCAGTTCTGCTTAGCTACAAGTGATTCTAATTCGTGAGACACTCACTGGTGGCTGTGGAAACCGTGGGAACTATGGTCTATTCTTTCTTTGT | |||||||||
gi|270455964|gb|GT838490.1|GT838490 CCYP1272.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TTGCTGCCTCAAGCTTGCTGC EST sequence (targeted fragment marked with yellow): ATCAGACATCCAGCGCAATCGAAGATTTGAATTCCAGCTATGGTTCTGCGACCATCTCTTGCAACCTCCTCGCTGTCACGAGGCATGGTGATGGTGTGATCGACATGTGTCCCGCCGATTTGCTTCCATGACCATCTGCTGCGTCGCCTCGCATGGCTCCACGCGTCGACCACCCGTGCTCCCACAGACCCCCGTCGATCTCGTGTTGGTTTCGCCTTCCCGATTTCCTTCCTCCCTAAAGCCCCGATCCCCCCAAGTTATCGCAAGCCGCAGTGGCTGGCTTCGGAGTCCACATCTCTCCACCGGCGGCCGCGCGCCGTGGCCTCAGATTGATGCAAGGGGTGGTGACAAACTTGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGGTTTCAGAGCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTGTCAGTGCAACAGCAGAATTATGCAATCTGAAGGCAAAAAGTAATGAAAATGTACCACTAGCAAACATGATTAGTTATTGGCATAGAGAATATTCCGATGCATGACATTTGCACAGTAGCTGCACAACTAAGCGAGAAATAACATTTCTGGAAAACGCAGGCAAGCATGTCCATTTTGAAATATGGATATCCTGTCTTGTTAAAGTCTTTAATTACCAATATGTACTTATTTAAAGTGCTCAGCTAGTAAA | |||||||||