| mature miRNA: TTGCTGCTAATTGCTGAATCA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109851218|gb|DW480197.1|DW480197 GH_RMIRS_024_A09_040_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): AAAAAAACAACTGTTAAAAAATTAGGATCTTTCTGTATTTTTTTGGGTCAACAATTAGCAGTAAAGTGAGTTTCCGTAAACAAATTCAGCTTAAAGAATTCACGAAAAAAATCCCTTTTTTTCTTACAAAAACAATGAAAAAAAAGACAGAGAATGTAATGTTTGAAGCTTTGGTTATATAACCGGCTTTAAACGAGATTAACGGCGCCGGACCTGGTTCTGTCGTGAGACGAAAATGGTGCCACCGGTTCAGATTTCAATCCCCATCACCGGTTCAATCTCTTTTACTATTCCTTGTTTAATTTATTACCTTATTTTTTTATTGCTATTTCTCTGAAAGTTTCTATTTTTCTTTATGATAAGTTGATTTGTCAGTGCTTGAAAAGGAAAGAGACAGAGTGTTCAAAGTCCACCACTTTAGTTTTTGACCAACCTTGATTGATTAATTAATTAATTAAGATTTTTTTACTAATTATTGATTCAAACTTTCATTTTTGTCTATTTTGTCAACTGAAAGAATTGAGAAATTAAAAAACACACCTTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|73849895|gb|DT458915.1|DT458915 GH_ON36N19.r GH_ON Gossypium hirsutum cDNA clone GH_ON36N19 3', mRNA sequence TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): TGAGGTTTAATATAGAAAACAAACTACTATGGATGTACAATTTTACAAACTATACCATATCTTACCCGAGGATTGTAGTATGATTGAACTTGAATTATCAATTGGCAGTAACGACAGCAATTAAATCTACAATTGCCCCGGCCCTCCCTAGTTGATAATGGAGACTTGTTTGTGCCTAATGTTGAAGGTTGTAAGGGTTCTACTTTGGGCCCTCCTTCAAAATTGAAGTGGAACTGTTTCGTGATTGTGCTCGTGATTTTGCAAGCATATGGTGTTGTTGCTGCATTTGCTTAAACTGTTGCAATGAAGCAAAGTTAATTCCACTCTGTAAATTCCCATTATCTTGGTCTATATCACCATCCTCGGTAATTTGTGATCCACTATGATGTAAAATTTGAGAGTGAGGGTTGCCTGAAGCTGCTCGTTTGAGATTACCACCACCGAAAGAGTATGATGGCACAGTTTTTAAACGTCTTCGCAAAACCTTGAATGCAGAACTTTGCTGTGGAAGTAGCATCAAAAGACCATATAATGCTTTCAGCAACCATATGTATTGTCTGGGTTCAAGAAGCTGCAATCTTAGATAAGCGAAGACTGGAGTTTCGAGCAAGCGAATCAACTTATCAAGCTGGACCAAGAATTTGGCATTAATATCTTCCTCGACCAGGGACTGAATCACAGCACATGCATGTTGGTACGTCTGAGCTAATAAACAGAGACTAATGATTGCCATGGGTGAATGGCACCATGATGCATACAAAGAAACAAATAAATCTTTTCCAGCAGCATTAACAAGTGACTGTTTCAAAAGTTCCCGAAGCTCAGATAGCTCAGAAGAAGTGAGTAGAATTAAATCGGACGCGTGG | |||||||||
gi|164242041|gb|ES832877.1|ES832877 UFL_343_41 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): GGAACATGGAATGGGACCCATCTGCAATGGCATTGCCCTTCACAGCCCTGGCCTGATTCCATACTGCGCTACTTTCTTTGTCTTCACTGACTACATGAGGGCCGCCATTAGGATTTCTGCCTTGAGTCAGGCTAGAGTTATCTACGTTATGACCCATGATTCCATTGGTCTTGGGGAAGATGGACCAACTCACCAGCCAATTGAGCACTTGGCAAGCTTCCGTGCAATGCCTAATGTTTTGATGCTCCGTCCAGCTGATGGAAATGAAACGGCTGGAGCATACAAGGTTGCTGTCCTCAAGAGGAAGGCACCCTCAATTCTTGCCCTTTCCAGACAAAAGCTGCCCCAGTTAGCTGGAACTTCCATTGAGGGGGTTGAAAAAGGTGGCTACATCATTTCAGACAATTCTTCAGGCAACAATCCTGATGTAATTCTGATTGGAACTGGTTCTGAGTTAGAGATCGCTGTTAAAGCTGCTGATGAACTACGGAAGGAAGGGAAGGCTGTAAGGGTTGTCTCCCTTGTTTCATGGGAGCTCTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGTTTTCCCATCTGCTGTAACAGCTAGAGTGAGTATTGAGGCTGGATCAACATTTGGGTGGGGGAAGATAGTTGGATCCAAAGGGAAGGCAATCGGAATTGATCGGTTTGGGGCAAGTGCACCAGCAGGGAGAATATACAAGGAATTTGGCTTAACTCCAGAGGCTGTTATTGCTGCAGCCAAAGAACTTTGCTAAGCTTGGTTCAAAGTCTCTGAGGAAACTTAAGGTTTTCGATTGAAGATGTCGCTGAAGAGCTGTTCCATTGTGACAGTCTCTTTTGTTTTGTTTTCTTTAATAAGAAACAAATTCAAATTTTCTTTTGTTGCTTATGAATCATCAATAAGCAGCAGTGAAGCAAAAAGGGAAGTTAAAAGTTTTCTTTATTGTTTAAGGGATTTGTAACTTCCTTCCTGGGACTTCTTCCAAATTTCGGCTTTTGGCCTAAAAATATAAAAATGAATTTTGAATAAATTTTGCTTTTTCCAAAATAAAACAGTTTTGGATTTCCCCCAACACTAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTCCCGGGCCACGAGAAAAGATACTTCTTATAAAAGGGGGCGCCGGGGGCCCCCCCTCTCATTTTTTCCCCCCCCCGGGGGGGGG | |||||||||
gi|109865543|gb|DW494519.1|DW494519 GH_RMIRS_102_G05_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAGTGGTGATTGCAAGTCATCAGGGCCTCGGGAATAAAGATGATGAAGTATAACACTTGGAGGTAAATCTTGGAGAAGAGGAGATGCCCCTAGTTGAGACGTTTCCAAGAAGATAAGCGGTCGGAATGCTCTAAGAGCTCGGTATGGTGCACCTAGTTGTTCTACAGGGAACAAATTCTGGCCCACAGCTAATTCTAGCTCAGCCATGTCTCTGGCCATTCTCAGCTTGCCTGATTCTGAAAGGGGTCTGACAAGAGAAGCATGCCTGATAAAGAGTATCAAAACCCTTGAAGCCATGCTCCTAACGAGCCTAGTGCATATGGTTTCTGTTCCTGCAGTTGTAGCGTTGGCTGAAGATGGCAACAGCCTTGATAGGAACTCACGACGAAAGGGAAGAATGCACTTTTGCAACTCCTCCATGTAAGGCGAAGCATTGTTGTCCATAGCAGCATCCATGCCAAGGGCAGAAAAGTTCTGGTCATGGATTTGCAAGATGCAAGACTCCAGCCGATCAATCATTGCCTGGAACAAGGATGTTATAGAATCACAAGCAACGCCATATATTGCACCAAGTGAAGGTGACAATACATCTGCAGCTATAGTTGGAAGCCCCATAATCATAGAAGTTACGCGAGTATGAATTTCTTGTAGATGCTGACATAATGCAAAATTCTTGACCTGAGCTGCCGTAGCAGGACCAGATACTTGGCGTGCTTCAGGACCAGTGGATATCAGATATTCAGCTCGTTCTGCAATCAGCAGCAAAACTTTACTAATTTCACGCAGCACAAGAAGCGTTAATCGAGCATCCAACTGCACAGCTTCGATCTCTTCCTGAATG | |||||||||
gi|164353484|gb|ES808175.1|ES808175 UFL_211_15 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): GGCACGAGGCTTTATAGAGAAGAGAATGAGAAGAAATTGGCTAGGCAAGCATTTGACTGTGCTAGAGGTATAGATCCATCCCTGGCATTACCATGGGCTGGCATGTCAGCTGATGCTCATACTGGGGATTCAACACCAGATGATGCTTTTGAGAGCTGCCTACGTGCTGTGGAGATATTTCCCGTAAGTGTTGATATCATGTTTTATGCTCTTCCCAAGGTATGAAATTAACCTTGAATTAATTGTTTGCTGTATAATCCTGTACGGTCAGCAAAGAAATTAAGGCCGTAACCATATCCTACCAGAGCAGTTTTAACTGCTGGGCTTGACCTGCATTTTACAAATACTTTATGCAACTGTAATCAGATCTTTGCTTTATTTGCAGCTTGCAGAGTTCCAAATTGGACTTGCTAAGCTTGCTTTACTTTCTGGGAACCTTTCTTCTTCGCAGGTATTTGGAGCTATCCAGCAGGCTGTGCAACGGGCACCGCACTACCATGAATCCCATAATTTAAATGGGCTAGTTCACGAGGCACGTATGCAGTTTCAAACTGCCATTGCATCTTACAGGCTAGCTCGCTATGCCATCAACATTTCTTTAGGCACTGTCCTCAAATCTCACTTGAAAGACATATCAACTAATTTGGCTAGATCACTTAGTAAGGCAGGGAATGCCATTGGTGCTGTGCAAGAATGTGAAGACTTGAAGAAAGAAGGTATGCTTGATGCTGAAGGTTTGCAAATATATGCTTTCTCCTTATGGCAATTGNGTGAGAATGATTCAGCCCTCTCTGTGACTAGGGCCCTGGCTGCCAGCGTTTCTACCATGGATAGGATATCTGCAGCTGTGTCTGTTAGTTCATTTGTAGATTGCTGTACTACATTTCTGGGACGGGATTTAGCAATTGGTAGCATTCTGAAAATGGCGAAGGAATTATTTCATAGGTCAAAAATAAGCTTTTATGTGTCTGCCATTAATGCTCTGGATCAGAATAATAGGCTGGGATCGATTATTTTCAGCAGTCGAATACTTCCTTGCATCCCAAGAGGAAATCCCTGGGATGCATTATCTANTAACACTTTACCAAACTAATTAACCATAAGGAAAAAAGCACTACCTTGGGGTTTCCAAAAGGAAATCACCCACTCTAAAAAAAGCCTTTCCCAGTGTCCCCTAAACAATTTTTTTAAAAAAGGAACCCAATTTGGGGTTTTCTTTTGTTTTTTCCGAGAAAAAAAGGGGGGGAAAAAATTCTGGGGGTTCAAAAAAAAGATGTTTCTTCCTCTTTTTAAAAATATTCTCTCTCTCTTAAAAAAAAAA | |||||||||
gi|109865428|gb|DW494404.1|DW494404 GH_RMIRS_102_B08_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): GTAATAGCAATTCAGGGGTTGGGGGTCTGAATTGCTATTCAAAACCACCCGTAATAAACATTTTTCCTTTTTTGGACCAAAATAGCCTGCCTCTCTTCTTCATCGTTTTCACTTCTTCTCAGATTTCTTCTTCATCCCCAAAGTGAACCCTAGAAAATTAGCTCCTTAATCGACGACAAATCAAGCATCCTTTCGCCATCTTCATCTTCATCTTCCTTCTCACTGAACCAAATTTATTTACAGTAAGTGCCTTTGATTCCCCTTTCGTATTTGGATATAAACTAGCAAAGCAAATTGTAAAACCAGAAAAGCAAATTACAGAGCGTCCATTCGACAGATGATTCGGTGATAAGCAGCAATTCATTAGTTTGGTTCACTGAATCATCCATTCGACAGAATTTCATTCATCTCCCATATTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|164360108|gb|ES833817.1|ES833817 UFL_356_55 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): GGCACGAGCCTTGGCATGCTTCCGCTAGCAAGAGAACTCCTTCGATGTGGAACAGAAGTTGTTTTGGTTGCAAATTCTCTTCCTGCACTGAATGATGTAACTGCTATGGAGCTTCCTGATATTGTTGCTGAGGCTGCAAAGCATTGCGACATCCTCCGTCGAGCTGCTGAAGCAGGAGGCCTCCTAGTAGATGCAATGAATAACAACACATTAGATGGTTCCAGAGGAAATTCTTCTTCAGTTCCATTGATGGTAGTTGAGAATGGTTGTGGAAGCCCATGTATAGATTTAAGGCAAGTCAGCTCTGAGCTAGCCGCAGCAGCCAAACATGCTGACTTGGTTATCTTAGAAGGGATGGGTAGAGCTCTTCACACCAATTTCAATGCTCGGTTTAAATGCGAAGCCCTCAAGCTTGCAATGGTGAAAAATCAGAGGTTGGCTGAAAAACTGATTAAAGGGAAGATATATGATTGTGTTTGCAGATATGAACCCGCCACTTGATCTTTCTCTAGTAACAACTTAAGAGATTTTGCAAGAAAATTTTTAAAAAAATATAAAAACTCCTGGAAAGGAAATGGAGCAATGAGAGTCCCATAGCATTGCCTATACCATTCAACTTTTAAGTTTATGATTTTGTTGCAGACAGTGTTCGGCAATTACCAGCAATTGTAATATAATCAGTAGAATACATGCCTGTAGATATCAATGTTATATACTTAAATTTTTGTGAATCTAAATTGGGTTGAATTTTTAAAAAAAAAAAAAAAAA | |||||||||
gi|109872125|gb|DW501101.1|DW501101 GH_TMIRS_053_B02_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): CTCACATAACAGATATTCTATTCAGTAAAGACAAAAAGATTTTGCACACAGAGAAATGGGATACCAGATATTCAGCTCGTTCTGCAATCAGCAGCAAAACTTTACTAATTTCACGCAGCACAAGAAGCGTTAATCGAGCATCCAACTGCACAGCTTCGATCTCTTCCTGAATGCGAGAAAGAATTCTAGAGATCTGTTCCTTGGAGGGAACACTACCGCGGCTGGAGACTGGAAAAACAGAATTAACAATATCTGACAGCCGGCTTAAGCAGCTACCTAAGAAAGCCATCTGGAATGTTTCAATAGCTGCAACCATTTGGGCTTTTCCTTCTAAAGTTATTGCTGGTAACACCCCCTTGACATCAGTGTCACGTGAAATTCCATCAAGAAGGTTTTCCATCATAGAGTAGAGCTTCGGATAACCATTTGTGAATATCTCTTTGACAAAACTTGATGCAGTAAAAGCAGACTTCATTTGAGTAGCAAAAGCCTTAACAAGAGCTTCCCAAACTCGATCAGTTGGCATGGGATCACCCTCCTTAATGACTTCATCAAGCAGCAAGACATGTGTAAAAGGGTCTCTCTTCTTAGACAAAACCCTCTGCAAATGCCAAATTGCGACCACTATCGAATGCAACTGATCCATACAACTTGCCTTT | |||||||||
gi|164313235|gb|ES846874.1|ES846874 UFL_138_08 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): GGCACGAGCTTTGGTTGATTCAGCAATTAGCAGCAACCGAGTGACTAATCTCGTAAAGCCTTCATCATTTTTTGCACCCCCTTCCTCTTCTTCATCCTCATTGATGATGCCACCTCCCTCTTCATCAAATCCAACCGCCTCTGCTCTTCATCCACCCTTCAATCCGCAACATCCCTACGGCACTCCAATGCTTCAACCCTTTCCACCATCTACTCCACCTGCATCTCTCACTCCAGGTGCCCCATCTACTTTGCACAATGGATCTCTTATTAGCAGGGATAAAGTCCGTGATGCTCTACTAATGCTTGTTCAGGATGATCAATTCATTGACATGTTCCACCAGGCATTGCAAAAGGTGCATCATACCTGAACGTGCTAAATTCGATCCTCAAAACTTCATTGCAATGTTCAATGTGCACTGCACACTTTTTTTTTCTTCAGTTTGGTATCTAAATCTAAACTTTGAAACTCGATTTGATCTACATGCCAATTGTTTATGGAGGACAAGGTGTTAATACATACAACATTCAAGCTTATATAGCCGGAGTTAGTACATAAAAAAAAGAAGGTGAATCAAGTTCATCGACATACATGAAAAGCTCTACACATGCATCAACAGAACATTGAATTTTAGGGTTGAGAGAAGAAAGAGTAAAAACCAACAACGATTCCTCAACCCATGTCTTTGCCTTCGCCTCCTATCGCCATTCTCTCTACACCTTTAAGTCGCACTTTCAAGAGGGAGAGATCTGTCATTGTTTGGCATCCCGAGAGTGTTTTCTTCCACTTTCTGAGACGTGCATTATATTACTACAATAGTCTTGATCGTGAAAATCAGGTAAAATTCTTGGTATTGTTTTGTTGAATCTAATTTGTTAATGTTTTTCTTGATCAAAATCATTAAAAACCATCAAATTTGGGAATCAAACAAAATAAAAATAAGAACTTGCGCAATGGACATTTGACCCGGAAGTTTTGGAGGTTCTAAATTTTTTTGTTTAAATCTTAAAACTAAAAAAGGGAATTTTCCTTTTTCCCTAAATTTTATTTGTTAAATTAAAATAAATGAAAA | |||||||||
gi|164275574|gb|ES805885.1|ES805885 UFL_628_02 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): GGCACGAGGTCTCATCATTTGCTGATACACCTTGTAGCAAGCTTGAAATTAGAACTGAAAAAGAACATTCACAAGCTATGGATGACATCAATAATGTTGGGGGAACTGAAATCTCTACTGAATGCAAAGTTACAAGGGAGGAAAGAGATTGGTGCCATATAAACGCCGCAGGTTTTAATGATGTAACTGATGGTTCCTTTGTAGAAGGGAGCAAGATAGATCTTGAAGAAATTGCTGAAGCAAAGTCGGATGATTGTGAAAGTTCCATGAAAACAGACGCAGCCCTGGATAGGATTGATGGCTTAGATGTGAACCAGTCTCCATGTTTGGACGAAAGGAAGAGTTGTGACCTAGAGACTGAAGAACCGCATGGCTTGCATTTTCCTGAAAACATAGCTGTTGACTCCATGGAAGTTGGAACTAAAAGCTGCAGTAAACTGGACATTATGACTTCAGTGAAACCTGAGATGGTTGTAGATTGCTCTTCCGTTTCCTCAGTATGTGTTGTTTCTGATGAACGGAAACATCTTGAGAATTCCGATGAATCAAACATCTTTACCTGCATGGAGATGAGTTTGTTTCTTGGGGTTGAGGATGGAGTTAAAACACCAGTCGCAATGGCCGGTGACAGTAAATATGATAATTTGGACAAGGCCATCCCAGAATGCAATTCAAGTGACTTTGAAGAGGGTGATTATGATATGAGAAGAGATGTTGATGACACAAATTTCTCAGTGGAAAAGGATGGTCCTGAAGATACTGAGGAAACGATGGAGTTGAGGAACGACTTCTATGGGCAGGATGCAATAATTGCAGCTAAATCTCCCCTTTCAAAGATTCGGAAATTAGCAGAAAAAGTAAATACCTGGCGAATCCTGATGGACCGAATATCTTTACCACGTGGAGATGAGTTTGTTCTTGGGGTCCATATGAAGTTAAAAAATCAAAAGCAAATGCCGGTGAACGTGGCCGGGGACGGGAATGATGTTGCTTTAAACAAGCCATTCCGGAATGGAATTCAGTGACCCTAAAGAGGGGAATTTGGTGCGAAAAACAAATTTGAAGGAAACAATTTTCTCCATAAAAAATTATAGTCCTGGAAAAAATGAAAGGGAACATTCAAAAACTTTCCTCGGGGCAGGAAAGGGCCAAATGGGGAAAAAAAATTTTTTCCCCTTTTCAAAAACATTTTTCGAAAAATTTAAAAAAAAAAAAAGGGGGGAAAAAAAACCCAAAACCAAAAAACCCTCCGGGAAAGAAGAAAAACAAAAATATTATTTTTTTTTTTTCACACAAACACCTGTGGGGAGAAAAAA | |||||||||
gi|109849445|gb|DW478424.1|DW478424 GH_RMIRS_014_B02_014 Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA s TTGCTGCTAATTGCTGAATCA EST sequence (targeted fragment marked with yellow): TATTTTGGATTGCGGAAAATGTCTCAGACTGGAAAATTGATGCCGAATATCGACCAACAAAGCACGAAGATGCTCAATCTCACTGTTCTCCAAAGAATTGATGCTTTCATTGAAGAGATCTTGATCACTGCTGCTCACGTCACCTTCTACGAATTCAACCTCGATAGTAATCAATGGAGTCGAAAAGATGTTGAAGGATCTCTCTTTGTTGTTAAGAGGAATACACAACCTCGTTTCCAGTTCATTGTAATGAATCGGCGAAACACAGATAATTTAGTGGAGAATCTATTGGGAGATTTCGAGTATGAGGTTCAAGGTCCGTATTTGTTGTATCGAAATGCTGCGCAAGAAGTTAATGGTATTTGGTTCTATAATCCGCGTGAATGTGAGGATGTTGCAAACCTCTTTAGTAGAATACTTAATGCATACACAAAAGTTCCTGCAAAGCCAAAGGCATCTGCAAGCAAAAGTGAATTTGAGGAACTAGAAGCTGTTCCTAGCATGTCTGTAATAGAAGGCCCCTTGGAGCCACCAGCAACTGCCTCTCGTGCTACTGATGCTCCTCAAGATTCATCATTTGTTAACTTCTTTAGTGCTGCTATGAATCTTGGAAGTAATGCTCCAAATGGTACAAAACCAACACAGCCTTACCATTCTATCTCGACCACCTCTCTGTTTTCTCATGCTCCAACTGCCATATCCTCTCCTACTCCTGCTCCATCAGTGTCATCCCTTCCACTTTCTGCTGCACCTTTGGTTGATTCAACAATTAACAGCAACCGAGTGACTAATCTCGTAAAGCCTTCATCATTTTTTGCACCCCCTTCCTCTTCTTCATCCTCATTGATGAAGCCACCTCCCTCTTCATCAAATC | |||||||||