| mature miRNA: TTGGACTGAAGGGAGCTCC species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74411260|gb|CJ766080.1|CJ766080 CJ766080 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf3d20 3', mRNA seque TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TTGATTACGTCACCACCGGAGGATTAGCAACCGCCCAACCGTCCTCCCCGGATTTTCCGCCCCAAGTTCATCTCGGAAACCCTCTACATCTCCCTCCTCCTCCTCCGCCGCCGGTGTTCACTATTCCCGGCGACCACCACCCGGAGCTGCAGAATTTCTCCTTCGTCACCGACCACCGCCACCACCACCACGGCAATCACAACGAATACAATCTAAACTTCAGCATTTCGTCTCCTTCGTCTCATTCGGGCCTTGCTGCTTTTAGGGGGACCCTTCAGTCCAATTCTCCTTCCTCGCCTTCTCTCTTGCCTCACCTACAGAGGTTTCCGGCGGCCGTAGACTTAACGCCGGCAAGTTTCTTCACCGCCGCTGCACCCACTGCCCCAGTCGACAACCACCACCACTTCCTCGGATTCGACGCCCGTTTGCAGCTCTTCTATGGCGACCACCACGCAGATCATAACGGCAAAGGAAAAACCTGAGCTCATAAAAGCTCCGCAGATCTCCTCTCTACCTCATCTTCAAACAAGGTGATTGAAGGTGAATGAATGTACTCAAAAGTCTCAAGTGAAGCAAGCTTCCCTGCCTGCAACTTCTTATTATGCTTCTAAAATCATTATTATGATTTCTGGATTTGTTCATTTCAAGCAATTCAGTTCGCATTCATGTATTCATGCCTGTCAAGTTGTGTTGTATTTTCTTGATATGAAATAATGTGTTTGCT | |||||||||
gi|74391584|gb|CJ746404.1|CJ746404 CJ746404 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf34h06 5', mRNA sequ TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GCTTGAGCTTCCTTCAGTCCTTCATTGTCTTTTTCGACCGCTTTATGCTTCCGTTGAAGAGGTCAGCAGTTGGAGGGGACGCCGCCGCTTCAGAACTAGAAGGTTCTTCTTCCTCTGCTTCTTATTCCCTGAACAAACGGCTCAAATCCGATTGCTATATCGGCGGCGGCGGAGAGGAATCGAGTGTCGAGATGGGAGGCGTGGAGGTGAACGGAAATGATGCTGTTAGTAACGGCCGTCGGACTGAGAATGGTAAATCGCCGATTGACTGCTCGCGTAATTCTCCCGACATCGATGAGGATCTGCACAGCCGTCAGCTCGCTGTGTATGGCCGTGAGACCATGCGTCGGTTGTTCGGCTCTAATGTTCTTATCTCTGGAATGAAAGGCCTCGGAGTTGAGATCGCGAAGAACCTCATTCTTGCTGGTGTCAAATCTGTTACTTTACACGATGAAGGAAATGTGGAGCTGTGGGATCTGTCTAGCAATTTTGTTTTCTCTGAGGATGATGTGGGGAAAAACAGGGCTCTTGCTTCTGTTCAGAAATTGCAAGAACTAAACAATTCTGTGATTATTTCTACCCTAACAAATGAGTTGAGTAAGGAACAACTCTCTGATTTTCAGGCAGCTGTATTTACTGATATCCGCTTAGA | |||||||||
gi|74412843|gb|CJ767663.1|CJ767663 CJ767663 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf50d01 3', mRNA sequ TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GGCCAAATATAGTCTACTAGTCAGTCTGTGTCCACTCGATCATCACTACCTATTATATTCATCACATCAGATCAGATCTGGAGAAATTATTAAACAATAATGGTTTGGATTAAACATTNTTCTTCATNNTNTTCTTCTTCTGTTGTTACCACCTTCTCCATACTTGTATCGTTGTCTCTCCATTTTCTTACTACTTTCTCTTCCTCCTCATCAGATGAGGGTAGTGTGTTTGTTTCTCAGTATTCCACTGGGACTGGGATTGGGAGGAACCTCCTTCAGGCCAAGATACCTTGTAACAAGAACTTTGAGTCTGAGAACTATACCATCCTCACCAGCCAATGCAAAGCTCCATACCAACAAATACAGCCATGTTGCGACGCCTTTACACAGTTTGCCTGTCCTTTTGCCCAATTTTTGAATGATAGATCTACCAACTGTTCCGATGTGATGTTCACCTACATCGACCAAAAAGGAGGTTTCCCAAATGGCCTTTTCACCGGTTGCAAAGGAGATCAAACTGGCCTAATTTGCCCTACACCACCACCTGATTTAACTGCCGGAGTCACAGTGGGATTGGGGGCACCCCCACCCATTATTCAATTCCTGTTTTATACTACAACCCTCGCTGTAACTTTTTTATTTTTAATCTCTTAAATCATTATTATTATGTCATG | |||||||||
gi|74400926|gb|CJ755746.1|CJ755746 CJ755746 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf10g06 3', mRNA sequ TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TGAGCACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGGAGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGCAACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGGGCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGTTCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCAGCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGTGGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGATGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCAATAATCTCTCGTTTCTTCTCTCCAAGGATATGATGAATTAGTTATGCAAGAGATCTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAGGTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTATTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGAGCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAGCTACT | |||||||||
gi|74389398|gb|CJ744218.1|CJ744218 CJ744218 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf29e16 5', mRNA sequ TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GACTGCGATTAAGCAACCTTTCATTCTCATCTTCTCATTATCGCAGCCTTTGCCTCTTTCTGCTGCAAAGAAATCTTATGATTATTGTTTATTTCTTTCATTAACATCCTATGTGGTTTCACCCACCAACCATTTTTTTCTTAATTTCTGTTCGAGGTTTATATATGTGCATGTTTGAGTGTGGTGTAATAAAAATTATAAAAAGAAAAAAGAAGAGAGCTTTCTTCAGTCCAAACATGGGTGGCAGTAGGATTCAATTAGCTTCCGACTCATTCATCCAAATGCTGAGATGAGATGACGATGAACCCGGCCTTGATGACTAATGAACACTGTCTCAGTAACTGAGTGAATGATGCGGGAGACAAGTTGGATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTTAACCTTTAATTTTATTTTTCTGTTTATTGCACTTATTTTTACCTTTAATATCTGTCTCTTTGCTAAGTTTCTGCAGATTCTTTGTTCCCTTTTCCACACTAATCGATCTGCCCAGCCAGATTCTATTTGGTTTGGTTTAATTTGTTGGTGTTTGCCAGTTACATATATAAATACACACATATACGTATAATTAAGTTTCAATTATTTCTGCATATTAATCTTGAAGGCTGGAGAAAGGGTTTTTCATTGGTTAAAATNAGGGTTTTCGCCATTACTTATGCGGTTGAA | |||||||||
gi|74396008|gb|CJ750828.1|CJ750828 CJ750828 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf50n12 5', mRNA sequ TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GCTATTAATAATCTCAGGCATCCCCACTTTCCTTCCTTGAGCTTCCTTCAGTCCTTCATTGTCTTTTTCGTTCAGACCGCTTTATGCTTCCGTTGAAGAGGTCAGCAGTTGGAGGGGACGCCGCCGCTTCAGAACTAGAAGGTTCTTCTTCCTCTGCTTCTTATTCCCTGAACAAACGGCTCAAATCCGATTGCTATATCGGCGGCGGCGGAGAGGAATCGAGTGTCGAGATGGGAGGCGTGGAGGTGAACGGAAATGATGCTGTTAGTAACGGCCGTCGGACTGAGAATGGTAAATCGCCGATTGACTGCTCGCGTAATTCTCCCGACATCGATGAGGATCTGCACAGCCGTCAGCTCGCTGTGTATGGCCGTGAGACCATGCGTCGGTTGTTCGGCTCTAATGTTCTTATCTCTGGAATGAAAGGCCTCGGAGTTGAGATCGCGAAGAACCTCATTCTTGCTGGTGTCAAATCTGTTACTTTACACGATGAAGGAAATGTGGAGCTGTGGGATCTGTCTAGCAATTTTGTTTTCTCTGAGGATGATGTGGGGAAAAACAGGGCTCTTGCTTCTGTTCAGAAATTGCAAGAACTAAACAATTCTGTGATTATTTCTACCCTAACAANTGAGTTGAGTAAGGAACAACTCTCTGATTTTCAGGCAGCTGTATTTACTGATATCCGCT | |||||||||
gi|74413284|gb|CJ768104.1|CJ768104 CJ768104 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf51h08 3', mRNA sequ TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TTCAGACCATTTAGCCCCTGCCGGAAATAATGGCAATGGCCAACAAAACAACAACGAGTACAACCTAAGCTTCAGCATTTCGCCGTCTTCTTCATCTTCCGGCCTTCCTGCCGGTCTTAATAGGGGGACCCTTCAGTCCAATTCTTCTTCCCCGTCTCTCCTGCCTCACTTCCAGAGGTTTCCTCCCTTAGACGGATCGTCACCGGGTTTCTTCACCCTCTCCACCGCCGACAACCACCACCACCACTTTCTGCCCCGATTCGACGCCCGTTTGCAGCTCTACTACGGGGACACCCACACCGCCGCCGCCGCTCGCCCCTCTTCTGACCACAAGGGAAAAGGAAAGAATTGATTTTCATTCAACTTTCACTTCCTCTCAACCCCCCATCTTCAAACCTGGTAAGTGAAGATGGAAGTGGGAACTAATGTGAAGAAGCTTTCTGGTTTCCCCTTGTGAAGTTGCGGCGCTTATTGTAATGGTAATGGTAATGGTAATTGTGAGATGGGATTTTATCCTCCATTACAAAGTATAAATTATTGTGAGGCACCCAAAAATATAATATTCCCAGGCAGGCATCCATGCATTTTGGTGCTTTTATGATGGCTGGTGCCCAGTAGCAGTCCGGTT | |||||||||
gi|27247622|gb|BJ565802.1|BJ565802 BJ565802 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm9f13 5', mRNA TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): CTTGAGCTTCCTTCAGTCCTTCATTGTCTTTTTCGTTCAGACCGCTTTATGCTTCCGTTGAAGAGGTCAGCAGTTGGAGGGGACGCCGCCGCTTCAGAACTAGAAGGTTCTTCTTCCTCTGCTTCTTATTCCCTGAACAAACGGCTCAAATCCGATTGCTATATCGGCGGCGGCGGAGAGGAATCGAGTGTCGAGATGGGAGGCGTGGAGGTGAACGGAAATGATGCTGTTAGTAACGGCCGTCGGACTGAGAATGGTAAATCGCCGATTGACTGCTCGCGTAATTCTCCCGACATCGATGAGGATCTGCACAGCCGTCAGCTCGCTGTGTATGGCCGTGAGACCATGCGTCGGTTGTTCGGCTCTAATGTTCTTATCTCTGGAATGAAAGGCCTCGGAGTTGAGATCGCGAAGAACCTCATTCTTGCTGGTGTCAAATCTGTTACTTTACAC | |||||||||