| mature miRNA: TTGGACTGAAGGGTGCTCCC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|31334986|gb|CD428517.1|CD428517 ETH1_27_H03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_27_H03_A002 3' TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): AGCCATTCTTCTTTCTATATATGAGTAGAGACAGAGTATATGACTACTACAGAATTTGACCAGTAACAAACAATCGGCTGCAAATGCATCACCGCTACGGAATCTCAACATCTCGCTGCAATTCCTGCAAATGCCACCACCCTTTTCTTCTTCTTTTTACTGTGTTATAACAATCGACTACTACAGAAATTTAACCAATAAATCTCATCAAACAGATAAATGAAAACAAGGAGAAATTAAGAACATATTATTGGTTCGCTGTAAACTCAATGACTCTCCATCTCCACAAGACAAATCTGGTGAGCTACGATGCTGGAGAGCAAAGCCATGGGCGACAGGCATGACTCCTATAAAAGGCGCTGATGGTCGTGAGAGAGTTCTCAGTCTTCGGCTGTGCCGTGGCCATGAGGCGTGGCTTCTGTGTCACCAGCATTGTCAGCTGCCAACCTTTCCTCAAGAACCCTCTCGCCGCGCTCCCTTCTTCTTGAAGCCTTGGCAGGATCTGAAATTGGGAGAGCTACTTCCGAAGGCCTAGACCTTGCACACAACATCCTATCAAACAGGTTGGCCACAGGGTCTGTAACTGGTCTCATGGCAGCTGGGAATAAACTGGGGAAAGGAGAAGTCATCACTGGGATCACCCTTAAGTCCAGTCAGTGGGTTCCTTTGGA | |||||||||
gi|57816307|gb|CX617520.1|CX617520 GABR1_34_E11.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_3 TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): AGCCATTCTTCTTTCTAATATGAGTAGAGACAGAGTATATGACTACTACAGAATTTGACCAGTAACAAACAATCGGCTGCAAATGCATCACCGCTACGGAATCTCAACATCTCGCTGCAATTCCTGCAAATGCCACCACCCTTTTCTTCTTCTTTTTACTGTGTTATAACAATCGACTACTACAGAAATTTAACCAATAAATCTCATCAAACAGATAAATGAAAACAAGGAGAAATTAAGAACATATTATTGGTTCGCTGTAAACTCAATGACTCTCCATCTCCACAAGACAAATCTGGTGAGCTACGATGCTGGAGAGCAAAGCCATGGGCGACAGGCATGACTCCTATAAAAGGCGCTGATGGTCGTGAGAGAGTTCTCAGTCTTCGGCTGTGCCGTGGCCATGAGGCGTGGCTTCTGTGTCACCAGCATTGTCAGCTGCCAACCTTTCCTCAAGAACCCTCTCGCCGCGCTCCCTTCTTCTTGAAGCCTTGGCAGGATCTGAAATTGGGAGAGCTACTTCCGAAGGCCTAGACCTTGCACACAACATCCTATCAAACAGGTTGGCCACAGGGTCTGTAACTGGTCTCATGGCAGCTGGGAATAAACTGGGGAAGGAGAAGTCATCACTGGGATCACCCTTAAGTCCAGTCAGTGGGTTCCTTTGGAAGTATCTTAGGTAAAGCCAGCTAACATACATCCCGGACACCAAAGTCGGCAAGAAGTTAATGGAATCAGGCACAATGAAGGCCATGATACTTGAGAAACATACAA | |||||||||
gi|57818030|gb|CX619243.1|CX619243 GABR1_44_G11.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_4 TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): CACATCATGAGTAGTGAGGCTCGGTTGCATTCCCTTACAATACAATAGGGGGCATTCTTCAGTTTAAAACAAAATTCATGAGCTTTGAGCTTGCAGCTCTCTTACAGCGACGCGATCGGAGTACGTCACAAGCTTGCCTTACCTCGAGCTCGATTGATTACCGATTTGGCCTTCGACATTGGCTTTCTGAATCCTGACAAAAACCTAAAACTCGGCTGGGGTGCACTCTATAGAAACCATTTTTTTCCTCCCGTATACATTGACACTCTATATAGAAGTAGAACTACTAATGCAGCTCGGCAGTATATATCTATACTCCATCACGCGACCTCCACCGCGTTCCGGCCAAAGTCGAAGGTGAGCATGGACGCCCTGAACTTGGTCTGCTTCTCCGGCGAGCCGACGACCGTCACCGACGGAACCACCACGGGCGTCGCCGCCACGGCCGCCGGCGCCGTCCGCTCGGGCGTGCCGAGCCACTTCGCCTGCATGTACTTGTGCTTCCTCCAGGGCCCCATGTGCATGTTGTTCTCCTTCATGCACTGCTTGGCCGCGGCGCACATGACCTTGACGACGCCGCGCAGGCGGTCGGCCCGCCCCACGAACGCCTCCGGCAGCGCGGTCACCAGCGCGCGGTACCCGGCGCTGGCGCGCGCCACCTCGAACTCGGCGCGGAAGCTGAGCTCCACCACCACGCGCACCGCC | |||||||||
gi|14366527|gb|BG948338.1|BG948338 IP1_12_D08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): TGCTATCTGCAGCTCTCTCATAGCACTTGATGGCTTCTTCAATCATTTGAAGTGGATCACTTTCGTAACACTGAGCCATGGCAATCCAGAGACGAGCATCATTGGGTTGCAAGTATGACGATTTCCGGAAGTAATGAAGTGCATAAAACGGCATCCCCATCATCTCATAGATTTGACCAAGACCATACCAAGCACGGAAATCTCTAGGATTAATATCAACAGCTCTTCTGTAGGCATCAATTGCAGCAGGAGTATTCTTCAGTTCAACATACTCATGCCCCATCAGGGTCCAAGCTGAGAGGTACTTTCGATTAAGCTTTAGTGCCCTTTGAAAGTACAAAACTGATTTCTCATGCTGACCCTTCAGACTGTAGTAATTTGCAATTATGCAGCAAGATTCTGGGCGGTATTTATCTGTCAAAAATACTCTGTGCGCAAGGAAACTCAAAGCAGTCAAGCTTTCTTTTGCATATAGTAAATTTGAGTAAATATCCATAGAATCCCCCCG | |||||||||
gi|37708881|gb|CF759656.1|CF759656 DSAF1_48_A08.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_48_A08 TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): CCGAAATTGGCGCTTGTGGAGGGAAGGGAGCCAACCCGGTACGGATTTGGATGAAAGTTCCACGGTTGAGGTGATTGGGGAGGTGTTGGGGAGGAATCTTCAGGCCAACCCTGGAAACAGTTCATCATGCCAAGTTCATGAAGCTGCCCCTCTTGCTGGTGATGTTAGTAATTCAAGGCCCAGGGTTACATTGGTGGCTGCTTTCAGCTCCTCTGATTCTACTGTTGCACAAGCCGGGGAGGTTTCAGCATTGCCAGAGCATAGAGTGGCTGTTGAGATGAGTGTACC | |||||||||
gi|45956203|gb|CN128910.1|CN128910 RHOH1_32_H02.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_32_H02 TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): AGCCATTCTTCTTTCTAATATGAGTAGAGACAGAGTATATGACTACTACAGAATTTGACCAGTAACAAACAATCGGCTGCAAATGCATCACCGCTACGGAATCTCAACATCTCGCTGCAATTCCTGCAAATGCCACCACCCTTTTCTTCTTCTTTTTACTGTGTTATAACAATCGACTACTACAGAAATTTAACCAATAAATCTCATCAAACAGATAAATGAAAACAAGGAGAAATTAAGAACATATTATTGGTTCGCTGTAAACTCAATGACTCTCCATCTCCACGAGACAAATCTGGTGAGCTACGATGCTGGAGAGCAAAGCCATGGGCGACAGGCATGACTCCTATAAAAGGCGCTGATGGTCGTGAGAGAGTTCTCAGTCTTCGGCTGTGCCGTGGCCATGAAGCGTGGCTTCTGTGTCACCAGCATTGTCAGCTGCCAACCTTTCCTCAAGAACCCTCTCGCCGCGCTCCCTTCTTCTTGAAGCCTTGGCAGGATCTGAAATTGGGAGAGCTACTTCCGAAGGCCTAGACCTTGCACACAACATCCTATCAAACAGGTTGGCCACAGGGTCTGTAACTGGTCTCATGGCAGCTGGGAATAAACTGGGGAAGGAGAAGTCATCACTGGGATCACCCTTAAGTCCAGTCAGTGGGTTCCTTTGGGAGTATCTTAGGTAAAGCCAGCTAACATACATCCCGGACACCAAAGTCGGCAAGAAGTTAATGGAATCAGGCACAATGAAGGCCATGATACTTGAGAAACATACAACAAAGA | |||||||||
gi|45962802|gb|CN132621.1|CN132621 OX1_7_F04.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_7_F04_ TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): GACAAAGCCATTCTTCTTTCTATATATGAGTAGAGACAGAGTATATGACTACTACAGAATTTGACCAGTAACAAACAATCGGCTGCAAATGCATCACCGCTACGGAATCTCAACATCTCGCTGCAATTCCTGCAAATGCCACCACCCTTTTCTTCTTCTTTTTACTGTGTTATAACAATCGACTACTACAGAAATTTAACCAATAAATCTCATCAAACAGATAAATGAAAACAAGGAGAAATTAAGAACATATTATTGGTTCGCTGTAAACTCAATGACTCTCCATCTCCACAAGACAAATCTGGTGAGCTACGATGCTGGAGAGCAAAGCCATGGGCGACAGGCATGACTCCTATAAAAGGCGCTGATGGTCGTGAGAGAGTTCTCAGTCTTCGGCTGTGCCGTGGCCATGAGGCGTGGCTTCTGTGTCACCAGCATTGTCAGCTGCCAACCTTTCCTCAAGAACCCTCTCGCCGCGCTCCCTTCTTCTTGAAGCCTTGGCAGGATCTGAAATTGGGAGAGCTACTTCCGAAGGCCTAGACCTTGCACACAACATCCTATCAAACAGGTTGGCCACAGGGTCTGTAACTGGTCTCATGGCAGCTGGGAATAAACTGGGGGAAGGAGAAGTCATCACTGGGATCACCCTTAAGTCCAGTCAGTGGGTTCCTTTGGAAGTATCTTANGTAAAGCCAGCTAACATACATCCCGGACACCAAAGTCGGCAAGAAGTTAATGGAAT | |||||||||
gi|57818954|gb|CX620167.1|CX620167 GABR1_50_F03.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_5 TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): TATGACATATTCTAGATTTATTGATCCGCTAATCACAACCAACAGGTCCAAGATATCACTTGCAAATAATATAACCCTGCTACTCCATGACATTTGCTTGAAAATTATCATCATATTCCTCTATTTTCAAATGCCTGTAATAATGTTATCCTAACTTGGCATAAACTCGTCAGTCCGGAGCACTCTTAAGTCCATGTACCTAATAATACACAAAAGGTTTTACAATACAGTAGCATGCCTGAATTATCACCAGGCTACAAACCTAAAACCTCTTCCATGGTTACGAACCGGCCCTGCTCGATTGATAATTGCCCAGCCACACCAATGGCAACAAATAGTAGGCCGTCACTTAATTTGACAAATGGTCCAAATGCACCTTGAGCCCTTATAGCAAACAAGAAATTGAGGTGCTCCAA | |||||||||
gi|37708329|gb|CF759104.1|CF759104 DSAF1_41_B03.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_41_B03 TTGGACTGAAGGGTGCTCCC EST sequence (targeted fragment marked with yellow): CTCAGTTGCCAGGGCGTACTGACAATGAAATTAAAAATTACTGGAACACTCGAATAAAGAGATGTCAACGAGCTAGCCTTCCTATCTATCCTGCAAGTGTATGCAATCAATCTTCAAATGAAGATCAGCAAGTGTCTGGTGATTATAATGGTGGCGAGAACATATCCAATGATCTTCTATCCGGGAACAGCCTTTATCTACCAGATTTTACCAGTGACAATTTCATTGCTAATCCAGAGGCTTTATCATATGCACCACAGCTGTCAGCTGTTTCAATAAGCAATTTACTCGGCCAAAGCTTTGCATCAAAAAACTGTAGCTTCATGGATCAGGTAGACCAAGCAGGGATGCTGAAACAATCTAGCTGTGTGCTTCCTGCATTGAGCGATGCCATTGACGGTGTGCTTTCTTCAGTTGATCAATTTTCAAATGACTCTGAGAAGCTCAAGCAAGCTTTAGGTTTTGATTATCTTAATGAAGCCAATGCTAGCAGCAAGAGTATTGCACCTTTCGGGGTTGCACTTACTGGCAGCCATGCCTTTCTAAATGGCAACTTCTCTGCTTCTAGGCCCACAAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATACTGAATCTGATCCAAATAGCTGGCTCAAGT | |||||||||