| mature miRNA: TTGGATTGAAGAGAGCTCCC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|67556874|gb|DR097519.1|DR097519 STRR1_35_E04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_E04_A033 3', mRN TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): GATAGCGTTTTTTTCCTCACAAAAAAAAAGTGAATAGCTTGCGCCATATGAATAACTCAGACTACATTGTTCATAGGATCATATGAGCTTTCATTTTCAGAGACTAAAGTCGGACGCACCGGTGAAGAAGTCGTAACGCCCATCGCTTCTTGTAGAGTTCTCTCTGACACTTCGGCGCGTGGAAGAATCTCTGGAATTGAATCTGTGCTCTCGATTACCGCGTGGATCCCGTTGTTTGATTCGTTGACCTGAGAAATTGCAGCTGCACATTCTGGCTTCTTGTTTCGATTAAGGAGATTCAGAGAATGTCTACACATTGGGCATGAAGAACGCGAGGTGAGCCACTTATCAATGCATTCCATGTGGAAAGCATGATTACAGTTGGGCAACACCCGCACCTTTTCTCCTTCCCCAAATTCGGCCAAACAGATGGGGCAATCAGTGCCCAAGCCCGGTGGAAGCTTAGAGGGAGATGTGTAAACAACAATAGGCAATGCTTTCATGGCCGCTTTCTTCAATCCAGTGTCGGCGAACTGGATAACGACGGCATCGGATGGGTTGCCCGCCATTCGTCTGCTGTAGCAACGTACGCATTTGAGCACCGAGTTGAGGCCAAGCGCACAGATGAGAGCGCAAACCATAGCTGCGATAATGACAGTTAGATCGGAGTTGAGACTGCCCTGGTCGAGGTACGTACCAGACCACCCAGTGTGCTCTTCTTCCTTTGGGGAAGCTGCCGGAAGAGAAGCTAATAACCTCCTACTGCCTGAAAACTGGGAATTTAAAACGCTCATTTTGCTGGATTCGACTTTTGCAACCTTAACAATTAATGAATGAATCAGTCCGTCCC | |||||||||
gi|67961209|gb|DR163304.1|DR163304 RTFE1_42_D06.b1_A029 Roots minus iron Pinus taeda cDNA clone RTFE1_42_D06_A029 3', mRNA seque TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): CCGGGTGGTTAAAGGTCATACTGGATAGAAGATCTAGCGAAAGACACGGAGAACAGAGTCAGTAACCGATCTAGGTTGCCTTCGCTGCATCTTTTTCGGCCATCCTCTTCTTGAACTCTGCGAGCTTAGCGGCGGAGGCGATCAACCGCTTCCTCTTCCTCCTACCGGCACCTCTCTTCGGTCCAGAGATGATGATCTCTTCCGTCAGCCTCTTCTTCTTCTTCACGAGAGCCTCCGCCCGTATTTTCTCGCGTTTCTTGTCGCGTTTTCTGAGGGTCGACATGGACGCCTTGAGCAAAGTACCATATTCAGAGTGGAACTTGTCGAGATCAGCGGGTTGGACGCGAGTCGAAAATTTTGTCTTTTTCCCGTCCATAGCGCGTATAAGACAAGGATACTCCGTCGTGTCTTCTCCATGTGTGGGATCAGTTCCATCGAGTTCACCATAGGACACGACTCGAACAGCACCCCTAACCGCTCCAGGAAAGTCGCGTTATCTACAAGCATCCAGCGGGAATGGAGTGCGGGGGAAGGTTTTTTTTAGGCCAATACTAGTATTATTAGAGTTGGATTAGGATACCATACAGCTAGCACTGTACAGAGCTAACCGTATACAGGAGGGTGGAAAACGTTGAAGATAACACAATTACCACATGCCAAGGGTACCTCATTGTATACACGTTTAAAAGCATAATGTTGGCTCTTTCTTACATAAATGAGCCTCAATAAAGGATTCACTCTTCATAATGGCAGAAAAATTATTAGAGTTTCACACAGGCAAACTAGATTGCAAGTGCATGGTCTCATAACTTTCAACTGCTCGAACTCTTTGTATG | |||||||||
gi|49444111|gb|CO362794.1|CO362794 RTK1_5_G04.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_5_G04_A029 5', mRNA sequ TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): AGGCCTCGGTCTCCCATCTCGATACTTCCATAATCGATGTACCATCGACACTCGCAACGCCAAGCCCAAGCCCACACTCCTACCCCGGCGTACAACCAAGGGTACGGAGGGTACGCCAGTCCGCCACCGCCGGTACATGGAGGTGCAGGGTACCCTGGATATGCCCCACAGCCCCCTCCAATGCAACCCCCTCCAATGCGAGTCGCACCACCAGGCGCAGATCCGGAACTCTGGCATTGGTTTTCTGCGGTAGATGCGGATAGGTCGGGGTCCATCACTGTCACTGAGCTGCAGTCTGCTTTGGTTAACGGAAACTGGACGAGATTCGATCTTGATACCGTCAAGATGCTCATGAATATTTTCGACACCGATCGAAGCGGGACCATTGGTTTTGATGAGTTCCAAGGACTTTGGCGATACATCAAAGAGTGGCAAGACGTTTTCAAACACTTCGACCGCGATCGCTCCGGTTCAATCGACGGGCAAGAGTTGTCCGCTGCCCTCAAAAGCTTTGGTTATCAGCTCTCCCCGATGTTACTAAACATGATCGAGCAGAAATATGCTTCTGGGCCGGTAGCGGGATACGGCCCCCCGCCCGGCATCACTTTCGATCGCTTCGTGAGGGCTTGCGTCGTGGTCAAGACGTTGACTGAAGCTTTCCAAGCTGTTGACACCGACCGGGACGGATGGATTCAGATAAATTACGAACAGTTCATGAAGATAGTGCTCAGTGCCCCCTGAGAGTCCTCTTCGATCCAGCAAATGGATTCGAATCCCTTTCCCCCGCGTTCTTCTCGGGGTGATCTCCTTTCCCCTTCAACTTTTCTTCGCCGAACTCGTCGCTCTTGGCCCGTCG | |||||||||
gi|70770364|gb|DR681888.1|DR681888 EST1071963 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAA328 3' end, mRNA TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): GTAAGTATTATATATATTGGATTTCTGTATAGCTCTCTTCAGTCCAAATGGAGGTTTTCATGAAGGTAGATCAGCTGCCGACTCACCCGTCTGGCTCTTCTATGAAGGAAATCAATGGCATAGACTAGCCGAATGGTTGATGCGGGAGCTGGTTTCTTCTCTATGTTACCCTCTGTTGGCTTGAAGGGAGCGAGACAAATCTATTTCTGTGTAATATACCATATTGGTGAATATACTTGAATATGAATGTTTAATAGTTAAAGGATGAACATTGAAGAATGAATATGGTTTTTAAGGTTAAACACCAAAATTTTATAATAGTTAGACAACTCCATTTTAGTTTTGGGTGTATGTTCTCCTCTTATTCAATGTTTTTAAAGTTTTTGCATTCAGCATTCTTTTAGAAAATTTCAATGTTGATAATTAAAATCTGATCTTCAATGCCAGAAATCAAATATTTTAACATATTCTAATTGTATAGGATAGTCCTGAATTATAGTATATTCAGGAATCAAGGATATTCGCATATTTTTATTATTCATCGTTTTATTAGTATTATATTTCTAATTTCGCTCTCTGGTTGATAGATTCGTGAAATGTGAACTGTCTAACTATGAAATTTTTACCTATAAAATATAATATGTATTATTTAATGTTAAAATGTTTGCATTTTTATCAGTTCAACCAGCAAGCCAATGCCTATCAGCATTCACAAACCGTGAC | |||||||||
gi|58028689|gb|CX715430.1|CX715430 RTPQ1_34_C11.b1_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_34_C11_A032 3', TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): GATAGCGTTTTTTTCTTCACAGAAAAAAAAAATGAATATCTTGGCCCATATGAATAACTCAACCTACATTGTCCATAGGATCACATGAGCTTTCATTTTCATAGACTAAAGTCGGAGGCAACGGTCAAGAAGTCGTAACGCCCATCGCTTCTTGTAGAGTTCTCTCCGACACTTCAGCGCGTCGAAGAATCGCCGGAATTGAATCCGCACTCTCGATTATATCGTGGATCCCGTTGTTTGATTCGCTGGCTTGAGAAATTGCAGCTGCACATTCTGGCTTCTTGTTTCGGTTTAAGGAGATTCAGAGAATGTCTACACATTGGGCACGAGGAATGCAAGGTGAGCCATTTATCAATGCATTCCATGTGGAAAGCATGATTACAGTTGGGCAACACTGGCACCTTTTCTCCTTCCCCAAATTCGGCCAAGCAAATGGGGCAATCAGTGCCCAAGCCCGGTGGAAGCTTAGCTGGAGATGTGTAAACAACAATAGGCAATGTTTCATGGCCGCTTTCTTCAATCCAGTATCGGCGAACCGGATAACGACGCCATCGGATGGGTCGCCGGCCATTTGTCTACTGTAGCAATGTACGCATTTGAGCACCGAGTTGAGGCCGAGCGCACAGATGAGAGCGCAAACTATAGCTCCGATAATGACAGTTACATCGGAGTTGAGACTGCCCTGGTCGAGGTAAGTACCAGAGCACCCAGTGTGCTCTTCTACCTTTGGAGAAGGTGCTAGAAGAGGAGCTAATAACC | |||||||||
gi|48932495|gb|CO161954.1|CO161954 FLD1_32_F02.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_32_F02_A029 3', mRNA sequence TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): TTCTTTTGACTCGAACAAGATTCAGCTATAATAAAAATTGGAACACTGACATGCAGGGCTTAGGGCACATAACAGTTGTTAGCAAGCCCAAAACAAATAGAGAAGAGAAAATTGTTAGAGATGAAATAGGTTAAAAGCAAAACAAATTCCATAAACAAGTTGCAGAAAGAGATGATGAGGATAAGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTGATTTGTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCTCCAACACATCCAAACCTTATTCTTTCTCCAAAAACTATTCA | |||||||||
gi|51495441|gb|CV032616.1|CV032616 RTNACL1_17_G07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_17_G07_A029 3', m TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): ACCGTGGAAAAAAAGAATTTATAAGCATAAGCTATTGCAATATAGGACAAGCTCTATTGCGTTTAATAGCAATTTTTTGTACTACAGCATTGGATTCATGACACAATTTGCCTCGCCTCGAATCACATAAAAGCAGTACGTCCTTAATAATTTGTCTTATCTCTAATGGGCATCGATGACTGGCCATTCGTGATCATGTCCATTCCGGCACATGCACAGCATGAATTTGTTGGAATGTTTGTAGAATTTTGGATACCTGCCAAGACTAACAACGTATCAGTTTAATACAGCAATTTCGGCGAATCACTTTGCTTGTTAAGCGACCAACGCGAACTTGCTAGCTCAGCCTGTAAAGTCGTTAATATAAGGTAGTGTAATAAATATTACGAGGAAACAACAATCTTAAAAAGCGATTGATACAATTCTTTTAATGTGTTATTCACGGTTGACAAGCATGCAGATTTATAACTATTCATAGCAGAAATGACATGATTAAATGTGTTTGCACAGAAGAACTAACATGAATTATTCAATTTACCATAACAAAATATAATTTCACGAATTGTAAAGAGGCAGTAGACTTTCTGGGAGCTCTCTTCAATCCAAGTAAAAACAGCGTAGTGGCAATACGACTCCCGTGTCATGCACACCATTATCTTGCCGCCAATACTGAACCTCGAGGATTACAAGATAGTAGAGTCCATGAACCAGCAGTTGAATCATCCCTATACGGCCTTTCGTTGGACTGAAGAAAGCTCCCCGTAACCTCCTCCCTTTTATATTAGAAATCTAACGTAACATCAACG | |||||||||
gi|34361388|gb|CF402971.1|CF402971 RTWW1_24_C11.b1_A015 Well-watered loblolly pine roots WW1 Pinus taeda cDNA clone RTWW1_24_C11 TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): CAACGCTGGAACCCTTATCACTACCATTAAACAACATAGGAATTCATTCAATATAGGAAGGGCGACAGACAGTCTGAAGCTATCGGACTTCTCTTCAATTTAATCACCAGCTAAATTACTGAATCTATATATATATTCACGACAGAGCAGTTAAGGTTCGTTCCGGATCTCAATCGAATCCCTCGGGACGGACCGAAAGCCAACCGGCCTCAGCGGAGTTTAAAGGAAACCATTAAAACTATAACTTCAAATAAATTAAGAAAAACTATAACAGAATACATTGTGCAGTCGGGTTGAGCACCCAGAAACACTATAAAAACACACAGCCAAACTGTATATCGAGGTAACCTCTTATGGAAATCTGAAAACTACTTATACGACAAAGGATTGGCCGAGCTTCACTCAAGGCCAGCAAAACCTCTCATCGGCGAAATGATCAAACGCTTAACTGCTTTCAACAGAAAACAAAAACGAAGTAAATTCCCCTTTCTCAATGCCCTTGGAGGGTTTCATGGCAGACCAACCTCGGAGGGAAGACATTCCTCGCGCATTATGGTTCGGCTGGAAGGAACGAGGTAGCAACCGAAGCAGCACCTGTGTGCTCGC | |||||||||
gi|74167500|gb|DT637429.1|DT637429 EST1152360 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMH355 3' end, mRNA TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): GCTGAAGTCCAATCCAAATTCCATGGTCTCCTTGAGCAGTAATAGCAATAATAATAGTAATAGTTTCTATTCTGTATTTGGGGCTTCGGGCCTCAAATTGGAGCTCCCTTCAAGCCAATCAGCGGGGTCTGCTGGAAGCGCAGACACGCCAAAGTCCAATCTATCTTTTACAAATTTTTCCTCCTCTTCTTCTTCTTTTCAGCAAACCAACTGCCTGATTTCAGAGGCGGACAGTTTTAATGACAACAACTCGGGACTCCTGGAAGCACTACTCATACAGGAAACACAGTGTCGTAATAATAATAATAATAAAGATTTGGATTC | |||||||||
gi|70774493|gb|DR686017.1|DR686017 EST1076094 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABB24 3' end, mRNA TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): GGAATCCTATGCCATTTTCTGGGTTGGGTAATGTTTCCATGGGCCCTTTGTTTTATCAAGCAAATCCAATCCAGCGAGTCAAGAGAGTTAGGGACACTAGTTTCATCATGGGACCCCCTTCCAGCCCTTTCGGTCGCATGGGTGTGAATGGTCACATAGGGATGAATGATGTCAGTAAGAGCTTGCAGCCTGGATTTAAGGCCAGAGTTCCTTACCCCCTCCAAGCTGCTAGATCGGATTCATTCGTTGCTCAAGGCTGCTTTCCCTATGACCCTAATCTCAGCAGCACTAGTAATCTGCCCCTGGGAGGGTTTTCATCAGGCAGCCATGCCATTATGAATGGTACTTTCTCTTCTTCTAGGCTTTTTTCTGGCCAGAAGCTGGAGCTCCCTTCAAGCCAATTTGCTGAGTCTGTGCAGACTGCAGGCTCAAGCATCAATCCAGTTTTAAATAGGAGCACTCCTCTTTTGCTGCCGCCCGTTCCTACTCAGACGATCAATCAAGTAGACTACAGCTTCTCTACGCCAAAAAATAGTGGGTTGTTAGAATCTATGTTCCAAGAAGCTCAAACAATGGGTGGGGGTTAAGGCTCATTCCTCCTCAAATTCCTCGATTGACCTGCAGGGGGGCTCCAAAAGCAGTATCAGTAACCCACTGAACAATGGGTTTCCTATGCAGATCAAGATAAAGCGTGGCGATAACA | |||||||||
gi|48937172|gb|CO166631.1|CO166631 FLD1_63_H07.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_63_H07_A029 3', mRNA sequence TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): TGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGCCTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGCTCCACTTATCCTCATCATCTCTTTCTGCAACTTGTTTATGGAATTTGTTTTGTTTTTAACCTATTTCATCTCTAACAATTTTCTCTTCTCTATTTGTTTTGGGCTTGCTAACAACTGTTATGTGCCCTAAGCCCTGCATGTCAGTGTTCCAATTTTTATTATAGCTGAATCTTTGTTCGAGTCAAATAAGACTTAGGTTTAACTTGATTGATCTGCATCGCTATAGTTTCAGGTTTTGTATATTCTGGTTGTTCACTATGATCTAGTTAGAGTTCGATCGAAAAGAATGGCAAATCTAATGATTATTTGTTGAGTGGCTGATTGTGGTACGTTTCGTTCTGTGCAAGAGTTTGGCCGGTCGCTTTTACATGGTTATGAATTATATTGTTATTTCATTTTAATTCCGATCTGTCGCTGAACGATTGATCTATAGTTGATTGTAACCAGGTTATGTATGAACTGGCCAGAGTGATTGAAAAAGTTTCATTTGTTACAAATAAAATACGATACCAATAATTAATGCTTCAGTGATATGAAATGGTTTGATCCATCTTATTGATTTTTTTTTGCAAAGTTTTATTCTATTACAGAAATAGAATTGTGATT | |||||||||
gi|74160986|gb|DT630918.1|DT630918 EST1145849 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMF240 3' end, mRNA TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): CGGCCGGGGTAAGTATTATATATATTGGATTTCTGTATAGCTCTCTTCAGTCCAAATGGAGGTTTTCATGAAGGTAGATCAGCTGCCGACTCACCCGTCTGGCTCTTCTATGAAGGAAATCAATGGCATAGACTAGCCGAATGGTTGATGCGGGAGCTGGTTTCTTCTCTATGTTACCCTCTGTTGGCTTGAAGGGAGCGAGACAAATCTATTTCTGTGTAATATACCATATTGGTGAATATACTTGAATATGAATGTTTAATAGTTAAAGGATGAACATTGAAGAATGAATATGGTTTTTAAGGTTAAACACCAAAATTTTATAATAGTTAGACAACTCCATTTTAGTTTTGGGTGTATGTTCTCCTCTTATTCAATGTTTTTAAAGTTTTTGCATTCAGCATTCTTTTAGAAAATTTCAATGTTGATAATTAAAATCTGATCTTCAATGCCAGAAATCAAATATTTTAACATATTCTAATTGTATAGGATAGTCCTGAATTATAGTATATTCAGGAATCAAGGATATTCGCATATTTTTATTATTCATCGTTTTATTAGTATTATATTTCTAATTTCGCTCTCTGGTTGATAGATTCGTGAAATGTGAACTGTCTAACTATGAAATTTTTACCTATAAAATATAATATGTATTATTTAATGTTAAAATGTTTGCATTTTTATCAGTTCAACCAGCAAGCCAATGCCTATCAGCATTCACAAACCGTGACTTAGTGACTGTGCCGGTCTTAACATATTCGACTTTCA | |||||||||
gi|57882873|gb|CX648044.1|CX648044 COLD1_26_E03.b1_A029 Root cold Pinus taeda cDNA clone COLD1_26_E03_A029 3', mRNA sequence TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): TTCAAATGCATAGTATCAACATCGACAATTCCTCAGAATGGTTTTTCTGAGTGCTGAAGTTTTCAGATTTTTGGAGACTTGAAAATTCCCAAGTGAAATTTCCGTTTCAATTCTGAGAGTTCCATTGCGAAAGCTTCCCTCTGGAGCAAAAATCCCAAATGCTGCGTGTGTCAAATCCTATGAAATTACTATTTCTCAGGGTGTAGTCTGGGTCTGGATGGCAGAAAGAAGCACTGCGGACCCCAAAAAGCTTCCATGGTTTGATCACTATTCCAAGCCTGGATTTCGGGATTTCTCTTCAGTTCATGAGCTTCCTTATGATCACTCCATTCTTCTGGAGAATCTCATGGATCCAGCCCATATACCCATTTCACATGACGGCACAGATCCATCTGCAAAAAGGGAGAATGCTCAACCGCTTGGATTTGAGGTCACAGAACGGACACCCAGGGGATTCGCAGGAAGATGGGGTGAGGCAAGCAATGCCACATTTGCAAACACACTAAGGTTTGAGGCCCCCTGTGTCCTTAGGAATGACAAAGAATATGTTGACAAAGATGGTAATAAGAATTATTCTAGTGCTCTGTTCCTCTGTCGTCCATCAGGACAGGGGAAGTCTATGCTTATAGTTAGATTCGGTAGCACCCAATTCAATTCACGATTCACCTTGATACCAAACTGGGTTATCCACCAGACATCCAACAGAGTCTTTGAACAAGATATGGGATTCCTCTCTTCACAGAATGAGATTTTATTGAGGAAAAAAGTGCCCACCAAGGACTTGTATCTTAATCTAAGGTCCTGTGACACATGGGTCACTGAGTACAGAAGGTGGTTAGATAAAGTAGGTCATGGAATGC | |||||||||
gi|67707246|gb|DR118936.1|DR118936 RTMG1_20_D04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone RTMG1_20_D04_A029 3', mRNA TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): AACTGAAGTATCTACTCTTTTTATTGATAGCGTTTTTTTCCTCAAAAAAAAAAAGTGAATAGCTTGCGCCATATGAATAACTCAGACTACATTGTTCATAGGATCATATGAGCTTTCATTTTCAGAGACTAAAGTCGGACGCACCGGTGAAGAAGTCGTAACGCCCATCGCTTCTTGTAGAGTTCTCTCTGACACTTCGGCGCGTGGAAGAATCTCTGGAATTGAATCTGTGCTCTCGATTACCGCGTGGATGCCGTTGTTTGATTCGTTGACCTGAGAAATTGCAGCTGCACATTCTGGCTTCTTGTTTCGATTAAGGAGATTCAGAGAATGTCTACACATTGGGCATGAAGAACGCGAGGTGAGCCACTTATCAATGCATTCCATGTGGAAAGCATGATTACATTTGGGCAACACCCGCACCTTTTCTCCTTCCCCAAATTCGGCCAAGCAGATGGGGCAATCAGTGCCCAAGCCCGGTGGAAGCTTAGAGGGAGATGTGTAAACAACAATAGGCAATGCTTTCATGGCCGCTTTCTTCAATCCAGTGTCGGCGAACTGGATAACGACGCCATCGGATGGGTTGCCCGCCATTCGTCTGCTGTAGCAACGTACGCATTTGAGCACCGAGTTGAGGCCAAGCGCACAGATGAGAGCGCAAACCATAGCTGCGATAATGACAGTCAGATCGGAGTTG | |||||||||
gi|34507548|gb|CF478679.1|CF478679 RTWW3_16_H01.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_16_H01 TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): TGCAGCTCGACTTGCTGAGTATTTCAAGTCTACAAAATGTCAAACTACTGTCGTTGGAGTTCCTGTCACACTTGAAGGCGATTTAAAGAATGAATTTGTAGAAACAGATGTAGGCTTTGATACTGTATGCAAGGTCAGTTCCCAACTCATTGGTAATATCTGTCTTGATGCTCTGTCAGCTGGGAAGTACTATTTCTTTGTACGACTTGTGGGGAAAGGGGCATCACATGTTGCTCTTGAGTGTTCTCTTCAATCAAATCCAAATCTGGTGATTCTTGGAGAGGAAGTTGCCACATCAAATATGACGCTTTCTCAAGTGACTAATTGTATTTGTGATGCTATTCAAGCCCGTGCAGAGAAGGGTAAGTATCATGGTGTCATTATTCTATCGGAAGGCCTCATTGAGAATATTGTGGATATTCGACTTCTAATACAGGAAATAAAGGGCTTACTAAAAGAGGGCATAAGCACTAAAAAATGTCCATCACTACTTTCACCTTCGTCAGCTGCTCTGCTGAAATCTCTTCCACTTTTTATCCAAAAGCAGCTTCTCGAGGAGATGGAGACAGAGGGATTGAATTACTTGTCAAATATAGAAACTGAAAAACTTCTGGCAAAACT | |||||||||
gi|51495527|gb|CV032702.1|CV032702 RTNACL1_17_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_17_G07_A029 5', m TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): AGTCGGCGCGAAGCATCACAAGACGAGATATTGGGCGAGACCCTGCAACAGATGACAACGAGTTGGATTGCTTGTCAAGAACAAGCAAACTTTGTATTGTTTATTATCATATATCATCTTAACTTCTGATTTGCTAGTTTGTTAAAATTTGTTTTTGCAGGGAGCAGGTTTCAAAATTCTTTTTCATTGCCTTAGAATGTTATAGCATAGTCCTCTCCTATAGGTTCTGTCCCGCTATATGTTTTTGTTTCAGGATTTTGTAACGTCAAGACTAACTCTGTTGGTATTTGTTTCTTTATTGTTTTTTCTTGTGTTTGCCTTCATAGATGTTTTAGCTCTTAATTATTATAGTTTGTGGGAGGAATGACGGTATTTCTATGGAATCAGTAATTTCTATTTTTGGTATTTTAGTTATCAGTTTTGAAAGTTTATCAATACTGGTAGGTTTTGGTGTAATAGTAAATTTTTTCGTGGTATGAGAGCCTGGACCCAGGTTCAAGTTGGATTGCCATAACTGAGTTTGACTGGATATACTTCTATAGAATCCTTAACTTTCAGCATAAAATTCCTAATTACAGTTTTAGAAAGTTCACCAAGATCCTAGTTACACGTTTAGAAAGTTTACCAACACCTGCTAGATTTTACGTTGATGTTACGTTAGATTTCTAATATAAAAGGGAGGAGGTTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTT | |||||||||
gi|67189868|gb|DR078315.1|DR078315 RTFEPL1_3_G01.b1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_3_G01_A029 3', mRN TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): CAACAATTCACTATTCACTATTGTCGAAATTAAATATACAATCAAATATTATACAAAATTGACAGGATAAAAGCCTGTTAATCACGCTATTCATGATGGATGTTCATATATGTATTTCACAATATAGATAGATCGATCATGAAATGTATATATACATCAATTTGACGTTATATCTACGCTGTCAGATGTATATGAACAGGAATCTAACTAATGGTATATGTACACAACCAAACGCCTACGCAACTCTCCAACCGCGTATTGCATTAATATTCTGTAACTACTCTGTGCTTATTGCCCGCCATGAATAGCTATCAGTGTATATAATAAAAGTACAACAGCAGGGTCCGCCATGTACAATGCTATATAAGAGTTAGATACTTGTAGGTAAATGAACCAGTAGCCGGGAGTTTCGAACGATCTGGACAAATAAATCACACTTCATAGTTAGGAAAGTACAATGGAAAATTTTCAATGTCATGAATTCTAAGAGAAAAACAATTTACTAATTTCAATATAGAGTCAGTAGGAATGATCCAAACACATGAGAGATTGAACATAAGCAGAATCTGTTAAGCTGAAATGTGAAAAGTATCATATAAAAAAACATAATGTTAACCCGGCTAAACAAAAGGAAACAGCAAAACCTAATTTCAGAAAAATGTATGCTACATAAGGGAGCTCCCTTCAATCCAAGGAAAAGACATTTCCTGGACAAAATCAGCTCCCGCATCATTCACACATCAACCCATTTGTTTCGTTTGTGGGTAAAAAGTGAGTTTGTGAAT | |||||||||
gi|34356912|gb|CF398495.1|CF398495 RTDS3_15_D09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_15 TTGGATTGAAGAGAGCTCCC EST sequence (targeted fragment marked with yellow): GAAGCAAACAGTTTTATAACTGAAGTATCTACTCTTTTTATTGATAGCGTTTTTTTCCTCACAAAAAAAAAGTGAATAGCTTGCGCCATATGAATAACTCAGACTACATTGTTCATAGGATCATATGAGCTTTCATTTTCAGAGACTAAAGTCGGACGCACCGGTGAAGAAGTCGTAACGCCCATCGCTTCTTGTAGAGTTCTCTCTGACACTTCGGCGCGTGGAAGAATCTCTGGAATTGAATCTGTGCTCTCGATTACCGCGTGGATCCCGTTGTTTGATTCGTTGACCTGAGAAATTGCAGCTGCACATTCTGGCTTCTTGTTTCGATTAAGGAGATTCAGAGAATGTCTACACATTGGGCATGAAGAACGCGAGGTGAGCCACTTATCAATGCATTCCATGTGGAAAGCATGATTACATTTGGGCAACACCCGCACCTTTTCTCCTTCCCCAAATTCGGCCAAGCAGATGGGGCAATCAGTGCCCAAGCCCGGTGGAAGCTTAGAGGGAGATGTGTAAACAACAATAGGCAATGCTTTCATGGCCGCTTTCTTCAATCCAATGTCGGCGAACTGGATAACGACGGCATCGGATGGGTTGCCCGCCATTCGTCTGCTGTAGCAACGTACGCATTTG | |||||||||