| mature miRNA: TTGGATTGAAGGGAGCTC species: Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56821324|gb|CX173900.1|CX173900 C07_69-20_05.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): AAGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTTCCAGTCCTCAAGTTATCAACGACTTATGAGTAGATAAATTGTAGCAAGTCCAAAGCAAACAAAGTTCCTTTAAGTATCTACAGGAGTATGGTGGCAAATTCCTTTGGGTGGGAGATATGAACATGGATACATCAAAAGAAAACAGTATTTGGCCTTCCTTCAGTTCAAGAACACCGCTGTACATGACTGTGCAAGCTGACCATACATACCATGCTGCGCCTGAGACTGCTTCCGGCAGATAATTGGTAGCCTTAACCCAAATTTACAACTATGAGAAAGAGACATGGATCCTGTAGCAAGCCATGAGCTCTCCACTGGAAAATCAGCATCTCTCAACAGCATCCTACCTTTTCTAAGAGGCGCAGGAGACCCTTTCATGTCACTTGTAACTGTACTTGGTATCTGCAAGATATTGGAATACAGGACACCTTCTGTTTGCTTCTGATACAGCTTCTCTAGGTTTCCAACAGGTATTTCTTTTTCCAACGCCTCTTTTCGACTGGTCATTTCCTTTCTGTTCATCGTGCCAAGAAGTCTATTTGCCTCTTTTGTCATTCCAGTAGCACGCCATGCTTCAGCAACAAGCAACATGGTTGATTTCTCAGGCTGAAACTCAAATTCTGTCATAATCTGGAGAATTTCTTCTGCCTTCCA | |||||||||
gi|56817082|gb|CX169658.1|CX169658 B12_69-95_04.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTACACTGTGTATGGTAAGCAAAAGCTTGTCACTGCATTTTCTTCAATCCAAGGTCATAAACCCGGTGTGCGGAGTTTGAATGCTGTTGTGGACTGGCAACAACAATCAGGATATCTGTATGCTTCTGGTGAGATATCATCCATCATGCTGTGGGACCTGGATAAAGAGCAGCTTATTCATTCCATTCCTTCATCTTCAGATTGCAGTGTCTCAGCAATGTCTGCTTCTGAAGTTCATGGAGGTCAATTTGCTGCCGGTTTTGTGGATGGATCTGTCAAACTCTATGATGTCCGGATACGTGAAATGCTTGTTTGTGCTAGTCGGCCACACACTGAGAATGTAGTAAGAGTTGTGGGGATTGGCTTTCAACCTGGGCTTGATCCTGGAAAGATTGTCAGTGCATCTCAGGCTGGTGACATGCAGTTCCTGGATATGAGAAATCTTATGAATCCCTATCTCACGATCAAGGCCCACAGGGGCTCACTCACAGCTTTATCTGTTCATAGGCATGCCCCTATTATTGCCAGCGGGTCAGCAAAACAAATTATTAAATTATTCAGTCTAAATGGTGAGCAATTAGACTCCATTACATACCACCTAACCATCATGGGCCAGAAGATCAGTCCTGTAAGCTGCCTC | |||||||||
gi|56823566|gb|CX176142.1|CX176142 G12_69-31_14.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGTTTTTTTTAAAGTGCAAATGACATTTTTTAATTATCATATGTGTCTTCTGCCCAGCCTATTGGGAGATAGAGAACAATGAACACTGACAGACATACTATGGTTAGAACCAAGAAGACAAACACGAACCTATAAGATAAAACTTAATTACATAAATTTGACAAAGGACCTCTCGAGCGACATACCGACAACTAGACTCACCAGAAATATGAATTTAGCATGATGACGAACCAGGATTGCTTTGACCAAGGTTAGAACACCCAGGACTAGGAGTTTGCTTTAATTCAGCTCCCTTACCAGTAAATCTAGGGTTCCGGTCAACCCTTGGTTCACTAACACGTGGGCTGTATGCCCTTTGTGAAAGCCGTGGACTATATGAAGATTTCATATTCTCTACTGAACCTGGAGTGGAACTTGTTACTTTAGGGCTTTGCGTGCGGCGGATCTCGCCACGGCTTCGTGTGATAATTTCATCAAGAATTTCCCCATCATCAATATTAGTAGTTGTGGCTTGTGGATCCTGATCTTCAAATGTCATGTTGTAAGATACAGCAGGAGCTTCCTCATATTCTGCAGCATCCAAGTCTTGAAGATGGGCTCCTTTGAAAAACTTAGGGAGGACATACTGCCGCACTGGAACAGAAGCATG | |||||||||
gi|56822053|gb|CX174629.1|CX174629 D03_69-26_07.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGGAGAGAACTAGTCTCAGTTTTTTTTTTTTTTTTTTTCAAGGTTCAAATACTAAGTAATTGCCAGAGTCTGCAAACATAGGTGGAATCTCCATACAAGAAACTAGAAGTCTATCTCCTATCACAATGTTGAGAATCTTATTACTTAAATAATTGTCAAACCCACATCAGTTCATCTTGATCCCATTCAGCTCTCTTCGATTCACAATCATTGACTATTGCTGAGCACATTGCACCCTCTGGCCGCCGCCACCATGCATATCATCATCTTCATCATATGCTTCTTGGGCCTGTTGTTGTAGGACAAAAACAATGTCCCCTGTAACCGTGTCGGGAGCTTCATCAGCCTCTCCAGGGAAAGTAATCCTCTGTGCATTTTGCATGCCCTTCTCAACAACTACTTCCAAAACTTTTTTCTCTTGGACCACCTTCTCACCCTTGCATTGAGGGCAACGGTCCTTGTCATTAATTGCCTCACCAGTGCCCTTACAATCATTGCAAGGATGCTGCATTTGCTGGATCATAGAAGGACCAAGGTGTCTTATAGAGACCTTCATTCCAGAACCTTGGCAACCAGAACATTTCAATGATGCACCAGACTTGGAACCTTTACCCTTGCACTTGG | |||||||||
gi|56824444|gb|CX177020.1|CX177020 G11_69-53_13.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGTCTTCAAGTCCCCACATTTCTATATGGAGCTGCCAATGTTGAAGGGAGAACACTCGATTCAATCAGAAGAGAGCTGGGTTATTTCAAGCCAAATTCTGGAAACCAATGGGCAGGTGGGCCAAAATCAGAGTCCTTGCCACTGAAGCCAGATGAAGGTCCAGCTCAAGTGAATCAAGCAAAAGGTGTTCTTGTAATTGGAGCAACCAGGTGGGTTGATAACTTCAATGTCCCTGTCTTCTCCACTGATATTGCTGCTGTTCGTAGAATTGCAAAACGTGTTAGTGGGAGAGGAGGCGGGCTTCCTTCAGTTCAAGCAATGGCACTTGCACATGGTGATGATGTCATTGAGGTTGCTTGTAACTTGTTGAAACCAAGTAATGTGGGAGGAGAGATGGTTCAGCAAGAAGTTGAGAGACTCGCAAAGGAGGAGGGTATTGCTGTGGGGAAGGGATATTTTACAGATTTCTCACAGGATAAAATAATTGAAAATTACTTGAAGTTTTGTCCCCTAATTTAACCACAAGATGCAATTTTGTAACAGAGAAGGTATTGTCCCTTCTGTGAAAATTACTTTAAAAAAAAATGCTACGCTGAAGGTGTCTTTCTAAGGGATTTTTGTTCCGATGCATGTGATGTGAATGGTTGTGCACACATGAAATGTGTACGTCTTTACCAGCATATTCACATCTT | |||||||||
gi|56818746|gb|CX171322.1|CX171322 D10_69-71_08.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTCGTGCCGAATTCGGCACGAGGTGCCAGAGTATGAGCATATATTTACGGATTTCCTTCTGAGCCTTGTACAGAATCAATACAAGAAAAAATCCACCTAGAAACTGTTGGAGGCATGACGGACATAAAAGAAGTTGTGTATTGAAAGTATCATGTTGTCCGAGAAAGTATGTGCAGGGGGGGGGTTGCTAGGTGCCGTGTATAGCATAATTAATGCCTGCTAGCAGCTGGAGGAGGATATGCGCAAATCCCAACCTTCAACGTCTGTAATTACTGGCTGGCTGGCTGGCAGGAGCTCCCTTCAATTCAGCTGGCTTTGCTCAATTCCTTATGTTATCTCGCCATTATTCTGTGCTGTTCAAAGGGTGTCATGAGCAGCTGGTGAATAGCAACCCCATAATCTGTATAGTCATTTCCCTTGGGATAGTAACTATCCCTCTGACTTGTCGAGAAGTTAATAGAATAACTCGAAACTTTAAACAATGGCGCTGTAAAACTCTCTGCCGTGTAGAATGAGAGTTGCCATCGTTTTGACAAATGAATTTCCGTTGCGTACACAAAGTAACCAGATTTGTAAGCTGAAGTATCTCAGTAAAAGAAAATAGCAGTGTCAAAGCTGAAGATTTGGTAT | |||||||||
gi|56820003|gb|CX172579.1|CX172579 E09_69-74_09.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGGCAATGCGACAGTGAGGCCGAACCCATAAAAAACGTCACATACCTAAGGCAGTATCCACCGAAGATGCTGGTTCTTGAGAAAGTGTTGAGAAACATGAAAACACATGTCACATACCTAAACGTTACACAAATGACTGATTATCGGAAGGATGGGCACCCTTCAGTCTATAGGAAGCAGAACCTGTCTCCGGAGGAAAGGAAATCACCGTTACATTTCCAAGACTGCAGCCACTGGTGTCTTCCCGGTGTGCCGGATGCGTGGAATGAGATTCTCTATGCTAATCTTCTAGTCAATGAAAAACAGAAGCAGCAAGCGCAGAAGAGGCATAGGTAAAGTAAGAAGAGGCCAACACAAAGTTAGAGAGACTGCAGTTGAAATATGGAGTTGAAACTGCACGTACATGCAGTATAGTTTTTCTTTTCTTTCAATTTTGGGTTATAGAAACAAAGAAACAACACGGGGAAAGATCCAAGGAACAGTGAGACATGTTTTCTCCAAAAACTATGAGAGAAACAAGGCAAGAGAGGAGTGAATGTGCTTATAGTAATATAAATCTATTTGTTTATATAAATGTGAGAGAAGAAAGAGGAGAGAAGAGATTGAAGGTGAAGTTTATAGGCGGGAATCTCTCCCCACTTGTTTCTTTATTATTATTCTTCTGGCCT | |||||||||
gi|47108066|gb|CK319643.1|CK319643 B9SP06f12 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence TTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TATGCCCGGGAATTCGGCCATTACGGCCGCCTTTGAGAAAAGAGGGTGGATACAGCTCCAGGCAAATGGCTTAACAGGAATTGGAGGTCAGAAGGAGACCTGTTGGCGAATGGAGCTTACTTCACTCCATCCGGGGCTGGAGCTTCAGCTAGCTATGCTCGCGCTTCAAGCTTGGGTGCCAAGTCTTCTTCCATGGTCGGAGCAATGACTGCTAATTCCGGTGTTCTTGGCTGCCGCAGGGGCCATCAGTGCTAGTCTTTTCAGTCAAATTTAAGTGGTCAAAAAGAGGCCACTTGGTTTTCTCTCTTTTTTTTTCCTTTAATTTTTTCTTACAACTATATAGTCCTGCTACTTCTGCCTGTTTTTCGTGTCCCAGCCATTGTTTCTGTCATATCTATCTGCATTCATCACATATATTGGCAAGTGTACAATTTTTACACATGTCATACCTATACCATCTCGGCATCTCCATTCCAGTTTGTCTCTGTTATTTCTCAACCTCGGCCTGCTTCAGATGAAAACCAACACCTTATACCATTATCCAGAAGAGCAGGCGCAGAAGCGTTGTTCATTTTATTTCTTTCACCTCTTTCCTTCCATTTCTTTTGCCCTTTCCATTTCCACATCTCCTTTACTTCTAGCTACCAGTCATGCATCTACATCTACAGTGTCAGTCTTGGTCGATCTCCACATACTGTCTAGGCTTTTGAGTCTATAGGATTTGAATGATTTGTGATCTTTCTTTCTTTCTTTCCTTTCCTTTTTTTTTAAAAAAAATTCTATCTGTCTAGTGATACA | |||||||||