| mature miRNA: TTGGATTGAAGGGAGCTCCA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74160986|gb|DT630918.1|DT630918 EST1145849 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMF240 3' end, mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGTAAGTATTATATATATTGGATTTCTGTATAGCTCTCTTCAGTCCAAATGGAGGTTTTCATGAAGGTAGATCAGCTGCCGACTCACCCGTCTGGCTCTTCTATGAAGGAAATCAATGGCATAGACTAGCCGAATGGTTGATGCGGGAGCTGGTTTCTTCTCTATGTTACCCTCTGTTGGCTTGAAGGGAGCGAGACAAATCTATTTCTGTGTAATATACCATATTGGTGAATATACTTGAATATGAATGTTTAATAGTTAAAGGATGAACATTGAAGAATGAATATGGTTTTTAAGGTTAAACACCAAAATTTTATAATAGTTAGACAACTCCATTTTAGTTTTGGGTGTATGTTCTCCTCTTATTCAATGTTTTTAAAGTTTTTGCATTCAGCATTCTTTTAGAAAATTTCAATGTTGATAATTAAAATCTGATCTTCAATGCCAGAAATCAAATATTTTAACATATTCTAATTGTATAGGATAGTCCTGAATTATAGTATATTCAGGAATCAAGGATATTCGCATATTTTTATTATTCATCGTTTTATTAGTATTATATTTCTAATTTCGCTCTCTGGTTGATAGATTCGTGAAATGTGAACTGTCTAACTATGAAATTTTTACCTATAAAATATAATATGTATTATTTAATGTTAAAATGTTTGCATTTTTATCAGTTCAACCAGCAAGCCAATGCCTATCAGCATTCACAAACCGTGACTTAGTGACTGTGCCGGTCTTAACATATTCGACTTTCA | |||||||||
gi|34348734|gb|CF390317.1|CF390317 RTDR2_18_D05.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone R TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TCTTCTGCCTACAATCAGTATCATCCATACTATCTCAAAGTCCTTGAGGCAACACAACAGGGTAAGTTGCATGACAAGGGTTTGGGGTCAAACCAAACTTCTCCAACAGATGTTCGATCCAGTGAAAATCGAAAAACTAGCCAACCTAAGAAAATGAATAATTCAACAGGCGATGAGTCATTACATGCTGCACGTGGTTCTTCTTCAGAAGATATCAACCCTATTCACGCTAAAAAGACACCAGATCTAGATAAAAAAACAAAATTCAAAATAGTACTTGGTGGCTCTAAGAAGGATGGATACGATCATGGGAGTGGAAAGCCTCTTGGTATGACTTCCGAAGCTGCTGCTTCAGCTGTTAGAGCAGCTACAAAGATGCCGACAAGTTTTCGTGGTCTTTCTCAAGGTACCGCAGAAGTTAAGGATAGTGATAAGAAAGGTGGGATGAGTGCTGACGCAGCTGCTGCAATTGTGATGGCTGCTACCAGGGGTTCACGGAGGCCTCAACAGGGATCAGCATCTGAACCTGGAACTTTACGTGGAGGGATTTTACACAAGATACTGAAAGGTATGTCAGAAGAGAGTGATGGGATTGGAAGTGCTGGCGTGAGTCCTAGTCAGGATGGTGATGCATCTCACTTCAATTCAAGCAGCGGTGGTATGCCTTTTCTACAGGCTGGGCAGAATTCTGGAGTCTCTGGTTCTGGTTCAAAATTTGTTCTTGATGGTTGTTTGCCACGTCAGCAGTCTGG | |||||||||
gi|70770364|gb|DR681888.1|DR681888 EST1071963 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAA328 3' end, mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GTAAGTATTATATATATTGGATTTCTGTATAGCTCTCTTCAGTCCAAATGGAGGTTTTCATGAAGGTAGATCAGCTGCCGACTCACCCGTCTGGCTCTTCTATGAAGGAAATCAATGGCATAGACTAGCCGAATGGTTGATGCGGGAGCTGGTTTCTTCTCTATGTTACCCTCTGTTGGCTTGAAGGGAGCGAGACAAATCTATTTCTGTGTAATATACCATATTGGTGAATATACTTGAATATGAATGTTTAATAGTTAAAGGATGAACATTGAAGAATGAATATGGTTTTTAAGGTTAAACACCAAAATTTTATAATAGTTAGACAACTCCATTTTAGTTTTGGGTGTATGTTCTCCTCTTATTCAATGTTTTTAAAGTTTTTGCATTCAGCATTCTTTTAGAAAATTTCAATGTTGATAATTAAAATCTGATCTTCAATGCCAGAAATCAAATATTTTAACATATTCTAATTGTATAGGATAGTCCTGAATTATAGTATATTCAGGAATCAAGGATATTCGCATATTTTTATTATTCATCGTTTTATTAGTATTATATTTCTAATTTCGCTCTCTGGTTGATAGATTCGTGAAATGTGAACTGTCTAACTATGAAATTTTTACCTATAAAATATAATATGTATTATTTAATGTTAAAATGTTTGCATTTTTATCAGTTCAACCAGCAAGCCAATGCCTATCAGCATTCACAAACCGTGAC | |||||||||
gi|70774493|gb|DR686017.1|DR686017 EST1076094 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABB24 3' end, mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGAATCCTATGCCATTTTCTGGGTTGGGTAATGTTTCCATGGGCCCTTTGTTTTATCAAGCAAATCCAATCCAGCGAGTCAAGAGAGTTAGGGACACTAGTTTCATCATGGGACCCCCTTCCAGCCCTTTCGGTCGCATGGGTGTGAATGGTCACATAGGGATGAATGATGTCAGTAAGAGCTTGCAGCCTGGATTTAAGGCCAGAGTTCCTTACCCCCTCCAAGCTGCTAGATCGGATTCATTCGTTGCTCAAGGCTGCTTTCCCTATGACCCTAATCTCAGCAGCACTAGTAATCTGCCCCTGGGAGGGTTTTCATCAGGCAGCCATGCCATTATGAATGGTACTTTCTCTTCTTCTAGGCTTTTTTCTGGCCAGAAGCTGGAGCTCCCTTCAAGCCAATTTGCTGAGTCTGTGCAGACTGCAGGCTCAAGCATCAATCCAGTTTTAAATAGGAGCACTCCTCTTTTGCTGCCGCCCGTTCCTACTCAGACGATCAATCAAGTAGACTACAGCTTCTCTACGCCAAAAAATAGTGGGTTGTTAGAATCTATGTTCCAAGAAGCTCAAACAATGGGTGGGGGTTAAGGCTCATTCCTCCTCAAATTCCTCGATTGACCTGCAGGGGGGCTCCAAAAGCAGTATCAGTAACCCACTGAACAATGGGTTTCCTATGCAGATCAAGATAAAGCGTGGCGATAACA | |||||||||
gi|61673167|gb|DN615667.1|DN615667 EST968717 Subtracted pine embryo library, Lib_B Pinus taeda cDNA clone PSACI72, mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): ACCCACAGCTCTGCGTTTCGTTGCTCTCTTCCTACGTGGGGCGTCTCAAGGCGAAGAAGAGTGATCTTGTGAAGGCGGTCGTGGTAGTCAGCCTGCTTAATGCTCGCAACATTTCCATCTAGGCTGCTGGCCTCAAACTTGAAACAGTAAATCAACAAGTTGTGGTTGTGCAAGACAGGTTGTGGTTGTGCAGGATAGTCAAGTTAGAGATAATCTATGGAATCTAAAGCCAGAAGACACACTTTAAAGCTAAGATGTAAGGACTGGGTTTTTCTTTGAGAGGAGCTCAGACGAAATGTAGCTGTAATGAGGTTTCTTTAATTCAGCTATTTCTTTGAGAGCAGTTCACAGGAAACATAGTTGTAATGGAGGTTTCTTTAATTCAGCGATTTCTTTGAGAGCAGTTCAGAGG | |||||||||
gi|67189868|gb|DR078315.1|DR078315 RTFEPL1_3_G01.b1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_3_G01_A029 3', mRN TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CAACAATTCACTATTCACTATTGTCGAAATTAAATATACAATCAAATATTATACAAAATTGACAGGATAAAAGCCTGTTAATCACGCTATTCATGATGGATGTTCATATATGTATTTCACAATATAGATAGATCGATCATGAAATGTATATATACATCAATTTGACGTTATATCTACGCTGTCAGATGTATATGAACAGGAATCTAACTAATGGTATATGTACACAACCAAACGCCTACGCAACTCTCCAACCGCGTATTGCATTAATATTCTGTAACTACTCTGTGCTTATTGCCCGCCATGAATAGCTATCAGTGTATATAATAAAAGTACAACAGCAGGGTCCGCCATGTACAATGCTATATAAGAGTTAGATACTTGTAGGTAAATGAACCAGTAGCCGGGAGTTTCGAACGATCTGGACAAATAAATCACACTTCATAGTTAGGAAAGTACAATGGAAAATTTTCAATGTCATGAATTCTAAGAGAAAAACAATTTACTAATTTCAATATAGAGTCAGTAGGAATGATCCAAACACATGAGAGATTGAACATAAGCAGAATCTGTTAAGCTGAAATGTGAAAAGTATCATATAAAAAAACATAATGTTAACCCGGCTAAACAAAAGGAAACAGCAAAACCTAATTTCAGAAAAATGTATGCTACATAAGGGAGCTCCCTTCAATCCAAGGAAAAGACATTTCCTGGACAAAATCAGCTCCCGCATCATTCACACATCAACCCATTTGTTTCGTTTGTGGGTAAAAAGTGAGTTTGTGAAT | |||||||||
gi|67963175|gb|DR164287.1|DR164287 RTFE1_48_B02.b1_A029 Roots minus iron Pinus taeda cDNA clone RTFE1_48_B02_A029 3', mRNA seque TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TTCGGAAGCCTCTTGGTATGACTTCCGAAGCTGCTGCTTCAGCTGTTAGAGCAGCTACAAAGATGCCGACAAGTTTTCGTGGTCTTTCTCAAGGTACCGCAGAAGTTAAGGATAGTGATAAGAAAGGTGGGATGAGTGCTGACGCAGCTGCTGCAATTGTGATGGCTGCTACCAGGGGTTCACGGAGGCCTCAACAGGGATCAGCATCTGAACCTGGAACTTTACGTGGAGGGATTTTACACAAGATACTGAAAGGTATGTCAGAAGAGAGTGATGGGATTGGAAGTGCTGGCGTGAGCCCTAGTCAAGATGGTGATGCATCTCACTTCAATTCAAGCAGCGGTGGTATGCCTTTTCTACAGGCTGGGCAGAATTCTGGAGTCTCTGGTTCTGGTTCAAAATTTGTTCTTGATGGTTGTTTGCCACGTCAGCAGTCTGGAGACATTTCAGGTGCATCTGGATCTATTATGAGGTTGGTTGATCCAAAAACACCGAAAGATGATGCTTCTGTTGCAAAGGTTATGGTAAAAGCTGCAGCCCTTGCTGCAGCTCGTGAAGCAGACTCTTCTGAAGCTTGCCTGTCACGTGAAGAGAAGTTGAAGGCAGAGAGATTAAAAAGAGCAAAAGTGTTTGCTGCTTTGATCAAGAATGGGCAGCACGGTTTAGAGGGTGAAAATGTGGAGTCTACTCCTGAAGGTGCAGTTTCTGTTCAGAATGAATCCGGTAGCAAGGCCACAATATGTGGTAGCTCTTACAATGCTGCTGCATTTCCATCGAATTCTCCGAAAGGGAAAATTTCTGATGTCAGTGCTAGAGGAGAAGATTGTGGGCAGACAGAAGTTGTTGCTGCTT | |||||||||
gi|51495441|gb|CV032616.1|CV032616 RTNACL1_17_G07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_17_G07_A029 3', m TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): ACCGTGGAAAAAAAGAATTTATAAGCATAAGCTATTGCAATATAGGACAAGCTCTATTGCGTTTAATAGCAATTTTTTGTACTACAGCATTGGATTCATGACACAATTTGCCTCGCCTCGAATCACATAAAAGCAGTACGTCCTTAATAATTTGTCTTATCTCTAATGGGCATCGATGACTGGCCATTCGTGATCATGTCCATTCCGGCACATGCACAGCATGAATTTGTTGGAATGTTTGTAGAATTTTGGATACCTGCCAAGACTAACAACGTATCAGTTTAATACAGCAATTTCGGCGAATCACTTTGCTTGTTAAGCGACCAACGCGAACTTGCTAGCTCAGCCTGTAAAGTCGTTAATATAAGGTAGTGTAATAAATATTACGAGGAAACAACAATCTTAAAAAGCGATTGATACAATTCTTTTAATGTGTTATTCACGGTTGACAAGCATGCAGATTTATAACTATTCATAGCAGAAATGACATGATTAAATGTGTTTGCACAGAAGAACTAACATGAATTATTCAATTTACCATAACAAAATATAATTTCACGAATTGTAAAGAGGCAGTAGACTTTCTGGGAGCTCTCTTCAATCCAAGTAAAAACAGCGTAGTGGCAATACGACTCCCGTGTCATGCACACCATTATCTTGCCGCCAATACTGAACCTCGAGGATTACAAGATAGTAGAGTCCATGAACCAGCAGTTGAATCATCCCTATACGGCCTTTCGTTGGACTGAAGAAAGCTCCCCGTAACCTCCTCCCTTTTATATTAGAAATCTAACGTAACATCAACG | |||||||||
gi|74161702|gb|DT631633.1|DT631633 EST1146564 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFA92 3' end, mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGGATCTAAATTAAGCAGAATATTGAAATCTGTGGGAAATGTCGTTGGGGAGTCCCGGATTTGAGTTCAGACAGATTTATGGCAACTCTGGTTTTCAGCGATGCGGGGCCTGCTAAGAGTATTGTTTCCATAGAGGAAGGATTCAGCCTGAAATGCTCTGTGGATTCCATTAGAATGCCAGAGGAGGAGAAGACTACAGCAATCAGTGGATTGGATTGTTGTGGGTTGTTGCAGGAGATGGTATGTAGAAACCAGGTCTTGGGCACAGATGAGAAGGAGGAGAAGAATGGAGGGTGTGAAATCAGGTGTGAATTCAGTGGGTCAGAGGGGAAGAGTTGGCAATCAGTATTTGATATAGCTGAGCCTCTGATTGAGCAGGACTTGGCTTCCGAAGCTTGCAGGTATTGTGTGAGCTTTTGTTTGTTTGGGTTTATTGCGATATTTATGGTCCATATCTGTTTCTGGGTGCTCTGGAGCTCAAAGGGACAGTGGATGAGGAAATTCTGTGTGTCAGAGCAGGATTGAGTTCTGCCCTGCGTATAATGGGTGGTGCTGTGGTGGTTTCTTTCTGTACATGGGGTTTCTTGGGAGTGGTTTCGAAGCACAGGAAGAGATGTTCATGTTGGCAAGATATTGAGCTGAGTCGAACCAGGGCAGATGATGCAGACGAGAGAGCTGAGAAAGCCCAATGCTCTAAACAACAATTCATGACCTATGTGTTTCACAATATAAGAGTTCCCTTCAATGCAATAGTTCTTGGATTGGGATATCTGAGAGCTATTGGAAATGTCGAAACGTCCTCGGCTGACGTCAAGGA | |||||||||
gi|6554938|gb|AW225642.1|AW225642 ST69B03 Pine TriplEx shoot tip library Pinus taeda cDNA clone ST69B03, mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGAATCGGTTATTTTAGCACTCTGTCTCTTTTGCAACCGCGTACCTTCATTCAGCTGCCTTCAATTCAATTTTCCTTTCGGCAGAATGGAGTCCGCCATTTCTGCAAGCAGAGGAGCAATAGTGGGCTGTTTGAGAAACGATGTCGCAGTTGGCTGGGGTCGNNNTTCTGCATCTTCAAATCCACAGATNGCTTCCCGATNNNCGGTTTCCGATGAGAGTCACCTCCAATATTA | |||||||||
gi|48937346|gb|CO166805.1|CO166805 FLD1_64_D07.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_64_D07_A029 5', mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TAGCAGCAGCATTTCAGATGGGAGCATAAAGGGATCAGCTGAACTTACCTCCAATTGTTCAATGTCAAAGCCAGCGGCTTCGAGGCGAGAGGCAAGATTAAAAGCGAGGGAACGAGCGAGGAGGAAATCTGCCTCAGCCCCAAATCCTGTCGGATCTCCACCGGCCTTCCAGCAATTGAAGTCAGTGAAGCCTTCTTCAACCAGTCCGTTTAAGAGCTGTTTTCCTTATCCTGTGCCTTCAGTGGAGTCCCACTGCAGCAACGATGATAAACTATGTGGGACTCCCACTAGGGTCCTGTCCGGGATAGACAGTGTTCAGCAACTGTGGGGTTATAATAATATGCCATCTTACACAGAAATATGCGTTCAAGATTCTCATCTGCTCCAAAACATGCCTTCTTATTCCACAGCAGCAATCCAAAAATCTATACAGCCAGTGCCCAGCACCTCAGCTAGTGTTCACGCTGTTATTGAAAGTTCTTGTATTCAAGCCTCAGCTGAAATGGCTAACTCCACTATTCCGTTCGTCCATCCAAAGCAAATTCTACACTTGGGAGGAAACGGAACCCAAGTTCAGACTAATGTATGCTACTCCAGTACTCCGAATATGATTATGAAAAGGGTGGAGCAACAACAGCAGCAACAATCAAACACCCACATTAGGCATTTTGGTTCCACCTTTGCTCCAACTCTTTCTAACGATATATATATCTCAACGTCAAGCCTAGATGGCAGGAGACCCCTTCAGTCCAATATTTCTTCTATAACAAATATAGC | |||||||||
gi|67556156|gb|DR096801.1|DR096801 STRR1_30_A10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_30_A10_A033 5', mRN TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TGTGAAGAGCTGTAAAGCTCAAGTTGAAGGTGCAGATTAATATACAGAATCTTTCAACCTGTTGAATGTAAAACGGTGCAATCTCTGTGGTTGGTTTTGTGGACATTAGGTTTCAAATTTTCCTTTTAAGATTTTGTGACAGTTGGGAGACTTCAGGTTTGTACAACAGAAGTCCCTGGAGGTTCATAGGAGACTTATTTGAACATGCTAGGAGGCACTGGGGCTTTGTCCGGACCCTCTCAGTGTAGAAATTATAGGTCTTCCAACGGAAGCGGGGGAGGTCCGTGTGCAGATAACCAGGTTAATGCAGAACTAGGGGTTAATGCGTACCCAGGGTTAAGCTGTGTTGGTTCGAATTGCTCAACCATAGACCCAGCCAAACAACATTCAAGTGCAATGGTTGCTTGACACATCTGGGATGAGAAACAAAAACCTGGTGATATCTGGGAATAAGAATAAGTTATGCTTATATATCTGGACTTAGGGTTAAGAGATTTATATTTCTTTATTTTTATTTTGCTGGTGTGAATTCAGGTTGCTGTTTAAGCAATTAGGGATTAGTTTATGCTTTTATATCTAGAGTTAAGGGGAAAACCATATTTCATTATTTAATTCCCTGTTTTAGTTTTTCTCAATGTAAAGAGCTTTTGATACTTCTGAAGGTCCCTTCAATTTAAATGTTAAATTGATTCT | |||||||||
gi|67561336|gb|DR101981.1|DR101981 STRR1_77_F01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_77_F01_A033 3', mRN TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CATAATTGCACAAAGTGCATACCTATCTTAGTCCCTTGCTAAAGACATCCACAAGATTGGTATTATGAGTTCCTGGAAATACAATAGAGGCCACCATGGAACTACAATTCCAATAGTTCCTCCCTGAGCGCTAGGCTCTTTTCCTATTAGGAAACTATTCATAATATTTCATAGATTTACACCTCCTCAGCCTAAGCAACATCATGCTAAAAATTATAATAAATTTCTTAAAAAAACATAAAAAAATAATAATATTTTACTAAATCCAATATCCCAGAAGTGAAGATCATGAACACATGGTCTAGGGATATGTAACCTGTGGAGTGAAAACCATGAACACATGATCTAGGGATATGTAAGCTGTGGATACTCCCTTTGGACTTGGTATCCGCGGGAGAGAACCTTCTCAAAGTGAGGAAGGGATTTCTTTACACAGTCAGCGCTGCTAAAACGGAGAAGCCAAGCGTGGAGCAGAGGCACAGTGTCTGGATCTATCAATTTCACTCCACTCATAGCCTCCACCGCTTGGAACCACACGGTTCGAGCTCCCAACACGATGTCCAGATATCCAATGCATTCTCCCCCGAAGAATGGGTTTCCCTTCGATCCATCAAAGGCGGTGCCGAAAGTTTCTTCCAACATAGATATGTTTGCCACTGTGTCTTTCGTTGCCTTCTCCCTCAACTCTCCTTCAGGGCACCTATATATTCCTCGCAGAGAATGTCCCAGCTTATCATCGATGAAAGCAGCCCAAAAACGAACGAGAGCTCGTTGATATGGATCT | |||||||||
gi|57885823|gb|CX650994.1|CX650994 COLD1_49_A06.g1_A029 Root cold Pinus taeda cDNA clone COLD1_49_A06_A029 5', mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): AGATGCCGACAGTTTTCGTGGTCTTTCTCAGGTACCGCAGAAGTTAAGGATAGTGATAAGAAAGGTGGGATGAGTGCTGACGCAGCTGCTGCAATTGTGATGGCTGCTACCAGGGGTTCACGGAGGCCTCAACAGGGATCAGCATCTGAACCTGGAACTTTACGTGGAGGGATTTTACACAAGATACTGAAAGGTATGTCAGAAGAGAGTGATGGGATTGGAAGTGCTGGCGTGAGTCCTAGTCAAGATGGTGATGCATCTCACTTCAATTCAAGCAGCGGTGGTATGCCTTTTCTACAGGCTGGGCAGAATTCTGGAGTCTCTGGTTCTGGTTCAAAATTTGTTCTTGATGGTTGTTTGCCACGTCAGCAGTCTGGAGACATTTCAGGTGCATCTGGATCTATTATGAGGTTGGTTGATCCAAAAACACCGAAAGATGATGCTTCTGTTGCAAAGGTTATGGTAAAAGCTGCAGCCCTTGCTGCAGCTCGTGAAGCAGACTCTTCTGAAGCTTGCCTGTCACGTGAAGAGAAGTTGAAGGCAGAGAGATTAAAA | |||||||||
gi|66974505|gb|DR050938.1|DR050938 RTBOR1_26_E01.g1_A029 Roots plus added boron Pinus taeda cDNA clone RTBOR1_26_E01_A029 5', mR TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): ATTAATAACTGTTTGCGTAACAACCAAAAAGCAGCATTTAATTTCCGAGGATAAATGCGAAGGATTAGACGGGCAATCCATTACATATTCTCTTTTCGAAAGCCTAACCAAGAGGACTGTACATAAATGAGATGATGCATATAATTTATTAAAACAATTAACAATAAGCTCTTTTCACTGATGCAAAAAAGCAATCCACACTTTGAATGGATTGCATTAAAATCAAACTGAATCCTGGACAGATGGAGTCCCTGCAATCCAACTCCAAACTCCACCCGAGCTTTGCTTCTGTGTAGCACGTGCAGCAGCTTCATCCACCGCAGACTTTTCACGTCGAAGCAACTCTACCTCCTTCTGTAAACCTTCAATTGACAGCAGCTTTTGCTTCAGCTCTGCAACATCAACCTCTAGTTTGAAGCACCTTGACTGTTCAGTAGCAAGCTGTCCACGTACAGATTGCAATTCCTTAATTAGCTCATCGTGTGTAGCTTGTGCTTCGCTAAGCCTTTGCCTGAGCCCAGAGTTCTCTGTTTGCACAGTTAAAAGTGTGGCTTCCAAGTCCTCTTTCTCTGCTTTTAATGTTGCTATATTCCGTTGTCTCGTTTCATCATTCCTTTGATGCTGTTGTTTTACCAGCGACTCTAAATTTGATTTGTCCATAAGGATCTCCCTAACTTTGCTTTCTTGCACCACAACTTCAGCATCTGGACGCCTGATACCATCCAATGTTGGCACTACCACTTTGGGTACTGCATAAGCAGCTGCAACTGATGCAGCCGCAGCGGCTGCTGCTGGGGATTCTACAATCTTAGGCTGTGCTGTCCCCTTGTGACTTGGTTTTAAA | |||||||||
gi|51495527|gb|CV032702.1|CV032702 RTNACL1_17_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_17_G07_A029 5', m TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): AGTCGGCGCGAAGCATCACAAGACGAGATATTGGGCGAGACCCTGCAACAGATGACAACGAGTTGGATTGCTTGTCAAGAACAAGCAAACTTTGTATTGTTTATTATCATATATCATCTTAACTTCTGATTTGCTAGTTTGTTAAAATTTGTTTTTGCAGGGAGCAGGTTTCAAAATTCTTTTTCATTGCCTTAGAATGTTATAGCATAGTCCTCTCCTATAGGTTCTGTCCCGCTATATGTTTTTGTTTCAGGATTTTGTAACGTCAAGACTAACTCTGTTGGTATTTGTTTCTTTATTGTTTTTTCTTGTGTTTGCCTTCATAGATGTTTTAGCTCTTAATTATTATAGTTTGTGGGAGGAATGACGGTATTTCTATGGAATCAGTAATTTCTATTTTTGGTATTTTAGTTATCAGTTTTGAAAGTTTATCAATACTGGTAGGTTTTGGTGTAATAGTAAATTTTTTCGTGGTATGAGAGCCTGGACCCAGGTTCAAGTTGGATTGCCATAACTGAGTTTGACTGGATATACTTCTATAGAATCCTTAACTTTCAGCATAAAATTCCTAATTACAGTTTTAGAAAGTTCACCAAGATCCTAGTTACACGTTTAGAAAGTTTACCAACACCTGCTAGATTTTACGTTGATGTTACGTTAGATTTCTAATATAAAAGGGAGGAGGTTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTT | |||||||||
gi|48932495|gb|CO161954.1|CO161954 FLD1_32_F02.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_32_F02_A029 3', mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TTCTTTTGACTCGAACAAGATTCAGCTATAATAAAAATTGGAACACTGACATGCAGGGCTTAGGGCACATAACAGTTGTTAGCAAGCCCAAAACAAATAGAGAAGAGAAAATTGTTAGAGATGAAATAGGTTAAAAGCAAAACAAATTCCATAAACAAGTTGCAGAAAGAGATGATGAGGATAAGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTGATTTGTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCTCCAACACATCCAAACCTTATTCTTTCTCCAAAAACTATTCA | |||||||||
gi|48937172|gb|CO166631.1|CO166631 FLD1_63_H07.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_63_H07_A029 3', mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGCCTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGCTCCACTTATCCTCATCATCTCTTTCTGCAACTTGTTTATGGAATTTGTTTTGTTTTTAACCTATTTCATCTCTAACAATTTTCTCTTCTCTATTTGTTTTGGGCTTGCTAACAACTGTTATGTGCCCTAAGCCCTGCATGTCAGTGTTCCAATTTTTATTATAGCTGAATCTTTGTTCGAGTCAAATAAGACTTAGGTTTAACTTGATTGATCTGCATCGCTATAGTTTCAGGTTTTGTATATTCTGGTTGTTCACTATGATCTAGTTAGAGTTCGATCGAAAAGAATGGCAAATCTAATGATTATTTGTTGAGTGGCTGATTGTGGTACGTTTCGTTCTGTGCAAGAGTTTGGCCGGTCGCTTTTACATGGTTATGAATTATATTGTTATTTCATTTTAATTCCGATCTGTCGCTGAACGATTGATCTATAGTTGATTGTAACCAGGTTATGTATGAACTGGCCAGAGTGATTGAAAAAGTTTCATTTGTTACAAATAAAATACGATACCAATAATTAATGCTTCAGTGATATGAAATGGTTTGATCCATCTTATTGATTTTTTTTTGCAAAGTTTTATTCTATTACAGAAATAGAATTGTGATT | |||||||||
gi|74161329|gb|DT631260.1|DT631260 EST1146191 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMF675 3' end, mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGGAATCGGTTATTTTAGCTCTCTGTCTCTTTTGCAACCGCGTACCTTCATTCAGCTGCCTTCAATTCAACTTTCCTTTCGGCAGAATGGATTCCGCCATTTCTGCAAGCAGAGGAGCAATAGCGGGCTGTTTGAGAAACGATGTCGCAGTTAGCTGGGGTCGGCTTTCTGTATCTTCAAATCCACAAATTGCTTCCCGATTTTCGTTTTCCGATGAGAGTCACCTCCAATATTATGGTGGAATGGTTAAACCATATTGTGGGAAGAAAAATAAATCAGAGAAGCTGAAATCGAAGCATCTTCCGCCTCTGAATGATCGGCCTCTGTCAGATAAGAGGAGGCTGAATCTATTGGAATTGATATCGAAAGATCTTCCTGCTTTGGCTACGACCCCAGCAGATGCGAGTGCATCCCTTACAGAGCAAGTCAGAGCAGAAATTCTCTCGGACGCCGTGAATGCGATGATGAGGCAATTAGAACAGGCCAAAGCGGAGCGCAAGGAGAGGAAGCGGCAATTGAAAGCCCAGAAAAAGGCTCTGAAATTAGCTGAAAAGCAGAGGAAAAGCAAGGGCCGTTGTGAAGACTCGTCCTCCTCTTCGTCTGACAGTGAGGCCGAGGTCGTCGATATGACTTGGCTACGGTCAACACAGCAAGCTGATCGGATTTTAGAGGCTTCTGACCAAAACCCCGTCGGTGTCGATAGAAAACCCTCCAATTGTAGCGGAGGTTAAAGGAGATGAAAAAGCCCTGCACGTAGAATTTGCAGATGCTAGTGATAGATTGGGGTTGAATCCAGGGGTGAGCATTCCAGT | |||||||||
gi|34506555|gb|CF477686.1|CF477686 RTWW3_9_F09.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_9_F09_A TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): AACCAACAAAAGTTTCTCTTTCTTACTATAAAATTACATAACAAAAAGTACCATAAATGAGTTCAAATCAGCACTTGTTCCTCACTTCGTAGATGAAAATTCCTTTAGTGTTACAAAGCTCTCTCTCCCATAAAAGAGTGTGTCAAAATTACACGAGCAAAACAGCATTTATGCATCCATCATTCTCTGGATTGTTGGTAACCTGAGCATATTTTCCCCACACAACCTTGCCTGCTGGGGTCACTAGACCAAGCTCACTTACATTAACCTCAATTATGGTTCCTTTTGTGATAACACCAAGAGAAGTAAACATAGGACCATTTGGATTTTTCTTCACTCCAATAAGATCAAGATTGAAGGTGCATTTTAGTTCAGGATGTGTAACATGTGCTTTGGTGAAACGCAATCCCATGGGACGAATAAATCGCTCATATTTGGGAGGCTTCCTTGTGAACCCAGATCCCACAAATGTAACCTTTGTGACCATTCGTTTCCACTGTTTGGTTTTTCTTTTGCCAGATCGTATGACACGAAACATTTCATCTTCTGCAATGGGCCTCACCTTGGGAAGAGGAACCTCCCATTTACCAGCTTTCTCCTTTCTTTTTTGCTTGATTGTATTGCTCAGCACCTTGGCACGAGTAGTTGCTT | |||||||||
gi|67708811|gb|DR120501.1|DR120501 RTMG1_30_D09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone RTMG1_30_D09_A029 3', mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CCAAAATGAAAATGTGCAATTGCTTGTGACTTGTACAAACAATAACAGGTCCAAAGATAAGTGTGCTGGTTCTCAGTCACGAAAATTAACTCATCGAAGATTCCGATATGCCATGTTTGGCGTCTTCGAATAGTTACAGCTTTGAGCTTTAAAATCTCCTATACTCTATGCCAAGATTAAGTTAATATCACGTAGCCTTTTTATTAACCACTACTACATCTCATAAAAAGCAATGCCAACAAGTCATACAAGAAATGCTGGTATTTGAAAGCATCGCACCCATAACCAACAAAAGTTTCCCTTTTCTTACTATAAAATTACATAACAAAAAGTACCGTAAATGAATTCAAATCAGCACTTGTTCCTCACTTCGTACATGAAAATTCCTTTAGTGTTACAAAGCTATCTCTCCCACAAAAGAGTGTGTCAAAATTACACGAGCAAAACAGCATTTATGCATCCATCATTCTCTGGATTGTTGGTAACTTGAGCATATTTTCCCCACACAACCTTGCCTGCTGGGGTCACCAGACCAAGCTCACTTACATTCACCTCAATTATGGTTCCTTTTGTGATAACGCCAAGAGAAGTAAACATAGGACCATTTGGATTTTTCTTCACTCCAATAAGATCAAGATTGAAGGTGCATTTTAGTTCAGGATGTGTAACATGTGCTTTGGTGAAACGCAATCCCATGGGGCGAATAAATCGCTCATACTTGGGAGGCTTCCTTGTGAACCCAGATCCCACAAACGTAACCTTTGTGACCATTCGTTTCCATTGTTTGGTTTTTCTTTTGCCAGATCGTATGACACGAAACATTTCGTCCTCTGCAATGGGCCTCACCTTGGGAAGAGGGAACTCCCATTTACCAGCTTTCTCCTTCCTTTTTTGCTTGATTG | |||||||||
gi|74167500|gb|DT637429.1|DT637429 EST1152360 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMH355 3' end, mRNA TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GCTGAAGTCCAATCCAAATTCCATGGTCTCCTTGAGCAGTAATAGCAATAATAATAGTAATAGTTTCTATTCTGTATTTGGGGCTTCGGGCCTCAAATTGGAGCTCCCTTCAAGCCAATCAGCGGGGTCTGCTGGAAGCGCAGACACGCCAAAGTCCAATCTATCTTTTACAAATTTTTCCTCCTCTTCTTCTTCTTTTCAGCAAACCAACTGCCTGATTTCAGAGGCGGACAGTTTTAATGACAACAACTCGGGACTCCTGGAAGCACTACTCATACAGGAAACACAGTGTCGTAATAATAATAATAATAAAGATTTGGATTC | |||||||||
gi|57882455|gb|CX647626.1|CX647626 COLD1_18_D05.g1_A029 Root cold Pinus taeda cDNA clone COLD1_18_D05_A029 5', mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TGAAGCTGAGAGTAATAAAGGTACATTGAGCTCAGTTATGGATTCTGTTCCAGTTCAGTCAATAACTGTATCGAGCTCAAACTTGGGTTCCCCTTCAATTCAACTTCAGCCTCGAGTTGAAGCTGCGAATGGTGATTGTCGTTTGGATAAGCTATCAAATACAGCATTTGATTCCATTCCTTCTGTTCAGGGAACATCTCCAATTCATCAGTCAACAAGCAGTTCACCTGCAAGCAATAAGCCGGAAAATGCTT | |||||||||
gi|34361364|gb|CF402947.1|CF402947 RTWW1_24_E10.b1_A015 Well-watered loblolly pine roots WW1 Pinus taeda cDNA clone RTWW1_24_E10 TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGGTGAAAAATTCTAACAAATTGCTTACATAACACGATACAAAAGCAGTTCATATCAGATTGGATTATGAACCCAGGGTTGTGTTACTGCTATGTTACTGCAAGAGGTTTTCTCGTCTTTAATACTATCATCCAAGCTTCAATGCTTGTAGTAAATTCTGAGATGCTCCCTTCAATCCAAGTTTTCCTTGGTCTGGAACTTCTGATTGACCCAGCTTGCCTTTGTCCAAGGACTAAGCAAGATTGTTATTTCCTGATCCAGATCTGGGGATTAGTAGTTTCTTCTTCCACCAAATATTGTTGTATCACATCTTGTTGTTTGGATGGGGTGCCCCTGATTTCTTCTTGTTCTATTTTTGGCTCATCCATGGGCAGGTCTGAGCCATCTAGCTCAACATCACTAATCACATGATGTTCTACTTTGGTACCAACGGAGCAGGTGGATTATGTTGGTAATTCTCAAGTCTATTTCTGTCAGAAAATCTTTGCTGGAGTCCATACCCACACAGTTTGAGCATTCGAGCATATGCAGTGAATCGTGATATTGTGGTTTTTAGTTTCCTCACTTCTGCTGTGGTGATATTGTGGTTCTTAGTTTCCTCACTTCTGCAATAGAAAAAACAGTTCATGTCAGATTGGATTATGAACC | |||||||||
gi|67687445|gb|DR112635.1|DR112635 RTS1_29_B09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_29_B09_A029 5', mRNA seque TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TCTAAGGTGGAGATCACTTCAGTCCAGTGCCAAAGCAGAAACAGCTTTAAGAATCTTATTGAAAAGACATGTGCTGTATTACGGACAAAAACATTTTGTTTGCTTTTGACAATGTGACTTGCCTTTCCCTGTTGAAACAGCACCAAAACTACAAGTGGTTTTATATTTGATGATAGATGGTCAAATATCTTTGTGAAGCCGTTAAGTGATGTGCTGTATTATGGACCAACACTACCTGTGGCTTTATTTTCTCTGATAGATGGCCAAATCTGTTTGTGGATCTGTTAAGCTGCATCGATTCTTTGCTGTTATGAGAGTAGGTGTAGTAATTACATTTGATCTAGTGCTGGTTTCCAGCTATGGGTCAATTTTCTGTTGATGATAAGGGAATAGAAAGAAATAACAGGTATTTCTTATGTATTCTGGTGACTATTTTTTTCGATCATATCTGCATTAGGGAGATATTTAAAGAAATTTGTCTGGGCCCTTGCATACTAATGGATTGTGTTTGTCATTAGTATGTTATGTCAATTGTTTTTCCTGGAAGTTAAGCTTGTATAGATTGTATTTTCTGCTGTATTTACATAATCCTCTTATC | |||||||||
gi|57881320|gb|CX646491.1|CX646491 COLD1_9_E05.g1_A029 Root cold Pinus taeda cDNA clone COLD1_9_E05_A029 5', mRNA sequence TTGGATTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GATGAGGAATAAGGACAGGCCTGATCGCCCCGTTTGTTCTCCTCGTCGACGCTCTGATGGAGCTTTCGGTGCAGATGAATCTCAGCCATATATTTCTTCTGACTGCTCACAGCTGTCATCCGATGTGGTAGTGCCCATAAGATCCGAAGTTAATGTTGAAGGGGTTTCTCAGTTCCATCATGGACCAACCCTTGGGTTAACAGATTTTTCTATAGAGGATAATTTATCAGTGGATAATTTTAGTCCCAATCCATCTGGAGCTCTGGGGAAATCCCGTCTTGTTGATTCAACAGGTGCTCAAATTGTCCGGTCAAATCGTATGAACAGTAACACTAATTTTGTGCCTTGCTTGGAGCAATCTTCAATTCAGGGAGAACAGAAAAGTGAGATGTTGATGACAAGCAGGACTGGAGAAAATGGAAATCACAGACAAATTATGAGGCGCCCACTGCCATTAGGATTAAAGGAATTGGACAGTTCTCTTAATGCACCCGAGTCAAAATCTTCCAAGCGAGGTGGTGCTTCGGGCTATGGAAACCATGAGAAGCAGGTTTGGGTTGCGGTTCATAAATCTGGATCTGGTTCTTAAGTTTAATGGAGATGAGTGGGGAAATGCTATGCAACTGATTTAATGTGGGATGTTGACTTTGGTCACTACCTTCAGTTTCGGCTTTATTGTGACTTGTACAAGCTATTGGTGTCTAATGTGTTGGAAGTACGCAACTGGCATGTTTTCAGTTGGTAAAG | |||||||||