| mature miRNA: TTGGATTGAAGGGAGCTCTA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164405417|gb|DB934105.1|DB934105 DB934105 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_039_N1 TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GAGTCACGTCCTACCATACCCACAAAAACCTTCCTTCAATCCAACTCAATGCCCACACAGAAAATCTTGACCTTTCTTTCTCCCACAATCCCAAATGAAATCAAGCATACTAAATCAAATTAAAAATCTGAAAAAGACTGTTTCTTGATTTCAATTTCTTTGAAACAAATTCTATTTCTTAATTTTCTCAAAAACCCAACAATGACTGAAGTACTCCATTCATCCCCATCTCACTTCCCTTCTCCTTCAAGCTCTTCTTCCACCCCACGTGTCAACAATGATATGCAACGCCAACAACTTCACCATAACCCCACAAGACTCCAAGAAATAGACCAAGAACAGGAACAAGAAGAGGAACAGGAACAAGAACAGGAACAAGAAGAGGATAGCTTCATTGAGAGGAAAATAAGGGAGAGAGAAGGGGATCAGCTGTCACTTCTTGAAATTTTGGCTGCTGCTTTTAGGAGGTCTGTTGTTGGGTGTAGTACTACTGCTGCTATTGGGAGTAAGGAGATTTGCAATATGGAGATTGGGTTGCCCTCTAACGTTAGGCATGTTGCTCATGTCACTTTTGATAGATAGTTCAATGGGTTTCTTGGGCTTGCCTGTTGAGTTTGAGCCTGAGGTCCCCAGGAGAGCTCCTAGTGCCAGTGCAACTG | |||||||||
gi|164404206|gb|DB947933.1|DB947933 DB947933 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_029_J1 TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GCCTAGCTGGTTTCAATAGGGGTTTCCTTCAGTCCAATTCATCACAATTTCAGAATTTGCCTCACCTACAGAGGTAAAAGAATCACCCCTTAGACGGCTCAACAAATGTACCTTTTTTCATTGCGACAGTTTTACGCACGCATACACAATTGGAGCATCATCACCAACATCAGTTCCCACCACCTGGGTCGCAGCTCTGCTACGGAGATGGAAGCAGGCATTCTGACCAGAAAGGCAAAGGGAAGAACTGAAAACTGTTTGGAAACCTTCCATCTTTTTCCTGGAAAGCGAAGATGACAAGCCAGCATAAGCCTGGCAATGGGAGATGCAGCTTTAGCTAAAGTGTTGGTGTTGAGCTTTATCCATTTTGAAGTGGGTTCAGGTTGCATTCTCATATGTCAGGATGCATGTTATGTATGCGTGCAAAAAGCAGTCGTGTGTTTTTTTGAAATATGTAAAACAATTCGTTTGAAGTGATTCTTTTTTTCCCATTGTTAATGATCATTCTGAAATTGTCTATACCATT | |||||||||
gi|56923531|gb|CK647868.1|CK647868 c.03.L22.5 CM523-7 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CTCAGTTACTCTTTCCACAAATTTCCTTATACACTGTTCTAATAGATTTGTTTTTATTGCATAGTTGCCACCTGAGCTATTCCATTGTTTCAGTTACTCATATTCAGGATAGAGGTTCACATCAAACATTATTAGTTGTTAACTTCAGACATTTCTCTCTAATTTTCAGGAGAGGAAAACTTCAGTGGTTGCACGGTTGGGTGCTCAACTCCTTTTGCTTTTCTTGAGGTTGAACATAAGAACAATAATGAAGGATTACTATCCAACGAAAACAGAGAGAGCTGATGATTGGCTTATTAACGAAATGCTGAGAGCTTCCTTCGATCCAGGTGTAATAGTGGTTCTGGAAAGTATTTTCAGTTTGAACCTTTCACTTCCCATTAATTATCTCTTGGAAGGTTTCAAGGAAAAGGCTCTAATCATACAGGTTCACTCTGTATGCTGGGGAACTCGACAAACTATTTGTTTTTCTTCCTTTCCTTCTGTTGCTTGATAATCCAGTTGCAATTGCATACTTATAAGCGTTCCCGTTGCTCCATTTCT | |||||||||
gi|164403905|gb|DB920109.1|DB920109 DB920109 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_001_C0 TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GAGCTGGCCAATTGGGAATCAGCTCTCTTCCAACACGTCGCCAATGGCACAAGTCTCTCACTTCTGTTTTGCTCTCCTTCTTCCTCCTTCAGCTTCCTCTGCTCCTTTTCGTCTGCAACTTCACCGACGAATTTCTTCTCCGTCTTTTCAAATTCGAGCCTCTTCGTCTTCTACTTCAATTTCCGGTTCGAAGCCGAAAGTCGTCGTCACAAGAGAACGAGGCAAAAACGGCAAGCTCATTAAAGCTCTGGCCAAGCATGGTATCAATTGCCTGGAGCTCCCTTTAATTCAGCACACTCAGGGACCTGATTTTGATAGACTCCCAGAAGTATTGAGTACAGAAGCTTCATTTGACTGGATTGTCATAACTTCCCCTGAAGCAGGCTCAGTATTTCTGGAGGCATGGAACTGGAACCCCAAAAGTTAAGGTAGGGGTTGTAGGAGCAGGTACCGCAAGCATGTTTAATG | |||||||||
gi|164378446|gb|DB934987.1|DB934987 DB934987 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_042_D1 TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGTGAGTTCCCTTCAATCCATTTCATTAAGATCTCACTTTCCTTCCTTCTTTCTTTGTTTTCCTTCCTTTGATTTGGGTATTGGGTTGTTTGTTTCTCTTGTGTGTATGGAATGACGGACTATCGGATATCATCCACGATGAATCTGTGGACGGACGATAACGCATCGGTCATGGAAGCCTTCATGAACTCTGATCTCGCCGCTCTTTGGCCGCCGCCGCAATCCGCCGCTTCTACTTCCACTCCTGCGCCACCCAACGCCGACGCCAGTAGGACCCTTATCAACCAATCTCAGCAGCTTTTTAATCAGGAAACCCTCCAGCAGCGTCTCCAGACCTTGATCGAGGGAGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATCGTCGTATGATTACTCGGGTGCGTCGGTGTTGGGGTGGGGTGATGGGTACTATAAAGGAGAGGAGGATAAGGGTAAAGGCAAATCTAAAGGTTCTAGCTCTTCAGTTGCAGAGCAGGAGCACCGAAAGAAGGTGCTACGGGAGCTCAATTCGCTGATCTCAGGTCCCACTGCCGTCACCGACGATGCTGTTGATGA | |||||||||
gi|56920059|gb|CK644396.1|CK644396 si.01.P20.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CTGAGATTTAATTCCATTTCTTATCAGAGAGATCTCTCCAATCCAAACCCATATAAATTAAGCGCACTTGGTTTGTTTATTGGTGATAAAAATGGTGAGAGCTCCTTGCTGTGAGAAGACGGGACTCAAGAAAGGTCCTTGGACTCCTGAAGAAGATCAGATACTCATCAGTTACATCCAACAATATGGCCATAGCAATTGGAGGGCACTTCCCAAACAAGCTGGTTTATTGAGGTGTGGAAAGAGTTGCAGGCTCCGGTGGATTAATTATTTAAGGCCGGACATTAAACGAGGAAATTTCACCAGAGAAGAAGAGGATACCATCATCCAATTGCATGAAATGCTAGGAAGTAGATGGTCAGCAATTGCAGCTCGATTACCAGGACGAACAGACAATGAAATAAAAAATGTATGGCATACCCACTTGAAGAAGAGACTACTGAAGCAAAATCCTGGCGACCCAAAAATCAAAAGACGTTCAATTGATATGTCTAGAGTTGATAAACAATTGAAAACAGAACCTGATGCTAAGTTGGTCAATTTA | |||||||||
gi|164398096|gb|DB937542.1|DB937542 DB937542 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_049_F1 TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TGGCGAGAGGAATTAACTCAAAAGAAAAAAGAAAAAGAGAAAATTTCTCTTCAACTTCTTTGGTTTCACATAATCAAAGTGTCCTTCTGTAATTTTCGATCTCTTTTCTATTGCTCCCTTCAATTCGAGCTCGATTCTCGCTGGCCCTCTGATTCTCCATTTCTCGGAAAATGGATGGGTCAACTCACCGAGGTAGCAGTAGTGTTGATGTGTTTTTACCAAATTACAAACTTGGTAAAACTCTTGGAATTGGTTCCTTTGGTAAGGTGAAAATCGCAGAGCATGCATTGACTGGCCATAAAGTTGCCATCAAGATACTTAATCGTCGCAAGATAAAGAACATGGAGATGGAAGAAAAAGTAAGGAGAGAAATCAAAATTCTGAGATTGTTTATGCATCCTCACATTATAAGATTATATGAGGTTATTGAAACGCCTACTGATATATATGTTGTGATGGAGTATGTGAAGTCTGGAGAGCTCTTTGATTATATTGTGGAGAAGGGTAGGCTACAGGAAGATGAGGCACGCAATTTCTTCCAGCAGATAATTTCTGGTGTGGAATACTGCCACAGNAATATGGTGGTTCATAGAGACCTTAAGCCTGAGAATTTGCTTTTAGATTCTAAATGCA | |||||||||
gi|56926979|gb|CK651316.1|CK651316 m.04.K11.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CTCCCCGAAGACAAATATCAAAAGGTGAAAAATGTTTCTCATAGCTTTTCTCTTCTAGGGTTTTTCAAGCTACACAGAACATGGGGAGCCCCAAATCGGATACTAAAAGGAGCGTTCCCTGCGATTTCTGCAGCGACCAGGTAGCGGTTCTCTACTGCCGAGCGGATTCCGCCAAGCTCTGCCTCTTTTGTGACCAGCATGTGCACTCCGCTAATCTTCTCTCTCGGAAGCATCTCCGTTCCCAGATCTGTGATAACTGCAGTTCCGAGCCCGTTTCTGTTCGTTGCGAGACTGATAATTTGGTGCTCTGCCGGGAGTGCGATTGGGATGCTCATGGTAGTTGCTCTGTTTCCGCTTCGCACTATCGAATTCCAATTGAAGGATTCTCTGGATGTCCATCTGCGCTTGAGCTCGCTTCAATCTGGGGATTCGATCTCGAGGAGAAGAACTTGGATAAGGTGCCTAATGGTAAAGCCATTGTTTATGGGAATGTGAGCGGTGAAGAGATG | |||||||||