| mature miRNA: TTGGCATTCTGTCCACCTCC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164360404|gb|ES820954.1|ES820954 UFL_333_05 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GAATATTGGGAGAGAACTGCGGAAGATATGCGTTCTCGAGCTTTTCAGTGTGAAAAGAGTGAAGTCTTTCCGGTTCATTAGAGAAGCCGAAGTTGGTTCCATAATGGAATCCATCTCATCGTCGTCAACCCATCCGGTGAACGTGACAGAGAAGGTATTTGCTTTAACTGGAAGCATAATATTTAGAATTGCTTTCGGCAAGTCTTTCCAGGGAAGTGAGTACGATCGTGCTAAGTTCTACGAATTGGTTCACGATGCCGAGACGGTGGCCGGAGCTTTCTCCTCCGATGAATGCTTTCCGAGATTCGGTTGGATTATAGATAGGTTAAACGGTCATAATGGAAGAGTTGAGAAAGTTTTTGGTCAATTAGATGCGTTGTTCCAACAGGTGATCGATGAGCATCTTAAACCTGGAAGGACACAGGATCACGAAGACATTATTGACGTCATGCTTAAAATAGAAAAGGAGCAAATTGATGAACATGGTCATGCTTGGCTCACCAAAAATCATATCAAGGCAGTACTTTTGAACATGTTCTTGGGCGGCGTTGACACCAGCGCGCTTTTAGTGATCTGGGCAATGGCGGAGCTGGCCAGAAAGCCAACATTTATGAAGAAAGCTCAGGACGAAGTTCGAGGGGTGGTGGGGAAGAAAGGAAGAGTAACAGAAACCGATCTGGATCAACTTCAATACCTGAAGATGGTTTTAAAAGAAACTCTAAGATTGCATCCTCCTGTGCCCATGCTGATCGCCAGAAAAGCCATCTCACACTTTCACATTAAATGGTTACCACATTTATCCCAACACACTTATCCAAATCAATGTATGGGGCATTGCAAGGGGACCAAAAGTACTGGGAAAAACCCTCAAGAATTCTCCCCAGAAAGGTTTATTGATTACGCCGTTGACTTCAAAGGACAGCATTTTTAACTGGTGCCTTTTGGAGGTGCAGAAAAGGGTGCCCGGCGCTGTACAGGGGAACCGTCACAAACCAAGCTTTACTCGCAAACCTCTGGTATTGTTTCGATTGGGTTTTGCCTGAAGGGAAGAAGGAGGCAAATATTACATGGAAGAATGGGGTGGTAAGTGGCCTTACCCTCTCCAAAAGAAACCTCTTTCTCCTTGGGGCCATCAAAAAACCCCCCTGGCCCCCCCCTTGGGGAAAAAAAAATTTTAAGGGGGGGAGCCAAAATCCCTTTTGTGTTTTGGTTTTTGTTTTTAAAAAAAAAAACCCCCCCCCCCCCTCCTTAAAAAAAAAAAAACATTTTGTTGGCGCCCTCTTTCTTTAATAAAAAA | |||||||||
gi|193219265|gb|EY196937.1|EY196937 B03_P9_025 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA seque TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): TGCAGGTCGACACTAGTGGATCCAAAGAATTCGGCACGAGCTCTCGAGTACTTTGAGGGGCTTGAAGTTCATGCAAAGGGCTGCTCAGAGAGAGGATAAAGTTAAGAAAGAAGAGGTTAAACCTGAAGAGAGTAGTGCTATTACTAGAAAATGTGTGGTCATTATGGAAGGGGATCCCCATCCAGGAGCAGTTGTTGGACGGATGTCATTTCTTAGTTTCAATCCTTCTATTGATGTGAGTATAAACTATAAAGGTCAAGCGACTTTCGAATTTTTCCCAGTGATTCTTCTCTTTCTGTGATCTTGAGTTGCTTCTGCTCTCATAAGAAAGCCTTGTCTTCATAGAAACTAAATGAAGAAGCATCAAATGCATGTCGGCCAAATGCCTCTGGTGGAAGAACTTTATCTAGGTGGGTTTTTTTTTAGTTGAGCAGATCTTATGTTATTGTTCTGGTTTTGTCCTAAAAGCTTTTGAATTATTATGTAATTTGTGTTGGAACTACAAAATGGTATTAAGAAATGAAAGATTTTAATCGAAGGAAAATCCGATGTTTCGTAATACCAAGGGACATTGAATGTAAGAAATATGGGGATGTTGAGATGGGAATGCTATAAGAGTTGCGNGCNACTTTGGNTCAGATTGTAGGGTAAGTTGAATTGAACACATGNTTGCACAAGATGCATGGTTTTTATCCTGACCTTTGTCCTTGAATTGGGGGACAGNGAAAATGGATCTGCATNCGAAGCGCTAACTTGCTCGAAGGTGGCCAGAATCCCAGATAGNGGAACCTAAGCGAAACATCTGGAATGGTTCTGA | |||||||||
gi|164265084|gb|EX164940.1|EX164940 E07_P8_051 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): CCNTTTANCTGNGTGCGTCTTACANNTGCGGTCGNCACTAGTGGNTCCAANNATTCGGCACGAGGTTGGGAGGCTTTCATACAATTATTTAGACGTAGCATTTGCGCCATACAGTGAATATTGGAGAGAACTGCGGAAGATATGCGTTCTCGAGCTTTTCAGTGTGAAAAGAGTGAAGTCTTTCCGGTTCATTAGAGAAGCCGAAGTTGGTTCCATAATGGAATCCATCTCATCGTCGTCAACCCATCCGGTGAACGTGACAGAGAAGGTATTTGCTTTAACTGGAAGCATAATATTTAGAATTGCTTTCGGCAAGTCTTTCCAGGGAAGTGAGTACGATCGTGCTAAGTTCTACGAATTGGTTCACGATGCCGAGACGGTGGCCGGAGCTTTCTCCTCCGATGAATGCTTTCCGAGATTCGGTTGGATTATAGATAGGTTAAACGGTCATAATGGAAGAGTTGAGAAAGTTTTTGGTCAATTAGATGCGTTGTTCCAACAGGTGATCGATGAGCATCTTAAACCTGGAAGGACACAGGATCACGAAGACATTATTGACGTCATGCTTAAAATAGAAAAGGAGCAAATTGATGAACATGGTCATGCTTGGCTCACCAAAAATCATATCAAGGCAGTACTTTTGAACATGTTCTTGGGCGGCGTTGACACCAGCGCGCTTTTAGTGATCTGGGCAATGGCNGGAGCTGGCCAGAAAGCCAACATTTATGAAGAAAGCTCAGGACGAAGTTCGAGGGGGNGGNGGGGGAAGAAAGGGAAGAGTACAGAACCCGATCTGGATCAACTTTCAATACCTGAAGATGGGTTTAAAANAACTTTAAGATGCATCCTNCCTGGGCCCATGCTGATCGNCAGANAANCATNTTACACTTCACATTAATGGGTACCACNTTTNTNCCACCACTTTTCAAATAATGNTTGGGCNTTGCANGGNCCCAANTACTGGGNAAACCTCANAATTTCCC | |||||||||