miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGGCATTCTGTCCACCTCC
species: Manihot esculenta
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|119003464|gb|DV443624.1|DV443624 CV01010B1A10.f1 CV01-normalized library Manihot esculenta cDNA clone CV01010B1A10.f1, mRNA s

TTGGCATTCTGTCCACCTCC
||| ||||||||| ||||||
AACAGTAAGACAG-TGGAGG

EST sequence (targeted fragment marked with yellow):
GATTCNNATACTATTAAACTAAATTTTATAGATAACTGTTAAATTTCATTTCGACACATAACAAGGCAATCACTACAGCATATTTACACAGGAAAACAAGGTAGAGGCAAGTACAGAAAAGTTTTGCTCTTTAAACCAGGAGTTCACCTATGGTTTAAGGGATCCTACTTGTACCACAGAAATTGTTGGTTGAATGAATATACTTTCTAAACTTGGATTGTAATACTGCCATACCCCTTCTTCTTTGCTCCAAAATTCTACGCTCCTTCCTGGATATGCAAACTTCAGGAAGAAATTCATGGAACATTTTCCCATTGTTGATTTTCCCACTTGTTATATTCTTGCAGTAGTTGCTGCAGAAGCAACGTTACAAGCCTATCCACTAAAGCCTGCATCATTCTGTATTTCATTGCACTTCCACCGTTTATCAGGGGTTCTTATGGCTCTGGCCAAATATAACATTAAGCTCTAAATTGTTTGAATAATTTACATGCATTCTTAGTGTTTTACAAATTCTGTTATGGAAATTTCAGATCATGCTAAGACAGACAAAAGTTCAATAGTGTTGGGATAATTTTAGAATGACTTAATTTCCTTATCCAAAATTCTAACATCTGGATCCAATCTACCAGCTGATTATTTGGGATACTGAAAGTGAAAATATTTGTTGATTTATAAGATATTATGAAGCTTAATACATATATAGGGATGGAGGTGACAGAATGACAAGATTATGTGGATATGGATGCCCACATAATCTTGATCCACTCACTCC