| mature miRNA: TTGGCATTCTGTCCACCTCC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7218465|gb|AW564587.1|AW564587 LG1_296_G04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GCACGAGGTGGAGGACCTGCTCCGCGCCTCCGCCGAGGTCCTTGGCAAGGGCGCCTTCGGGACGGCGTACCGGGCCGTGCTGGAGGACGCCACCACCGTCGTCGTCAAGAGGCTCAAGGAGGTGAACGCCGGCCGCCGCGACTTTGAGCAGCAGATGGAGCTGGTTGGCCGGATTCGACATGACAACGTCGTCGAGCTCCGCGCCTACTACTACTCCAAGGACGAGAAGCTGCTCGTGTACGATTACTACAGCAGGGGAAGTGTATCCAACATGCTTCATGGGAAGAGGGGAGAGGACAGAATGCCATTGGACTGGGAAACCAGATTAAAGATTGCCGTGGGAGCAGCAAGAGGAGTTGCACACATTCACACCGAGAACAACGGGAGATTTGTTCATGGCAACATCAAG | |||||||||
gi|45965252|gb|CN134042.1|CN134042 OX1_19_G12.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_19_G1 TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): CCTACTGGAAAATCCCGAGCGAATCCCGTGCCCCGCGCGGGACCGGCGTGGGCCTATACGCCTCATCTCCCTCCCTCCCTCCGCCGGGTTCCCCGACCTTTGTAAACCCTAATCAAGTTCGCACCAAATCGGTCGCACCTCAGCTCAAAATCCGAAACGATTCGAACAATCAGAACGAAGAACGATTCAGCTTCAGCTCCTGAATCCAACAGCAATGGATCGCTCCCGCTCCAAGCGCGGCTACCACTACGACCAGGACTCCCCGCCTCCCCGCTCCAAGCAGCGCTTCGACCGCCGCACAGCGGCGGCGGCGGCGGTCAGAATGCTAACTCGAGCTACCACCGCCGCGGCCCCCCCAGCGGGCGGCGGTGGCTCCGACCGCCGCGCGTTCCTGCCTCCCGACGCCGCGCCGCCCCCGCCCCCGCCGCCTCCTCCCTCGACGGCTGCGGCGGGCGGCGGCGCTGGTCCCACCACCACCACCTCCTTCCGCATCCTGTGCCCCGAGTGCAAGGCTTACGGTTTCCCACCTGGCTTCGTTGCCAAGGTCCGGGACGAGAGCGGCGCGTTCGTCACTGTGCACCCGCCCTTCGCGGGCGACTACGTCAGGATCATCGAGACGGTCG | |||||||||
gi|9308388|gb|BE366831.1|BE366831 PI1_41_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): CGGTATACTTCATGTGCGCAGAACCAGATGGTGTTTTGTCATATGATGTAAGCACCGGGATTTGGAGGCAATTTGCCATCCCACTGCCACTGCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGTTAGTGGGTCTGCTGTGCAAAAATGCAGCGACCTGCGTATGCATATGGGAGTTGCAGAAGATGACTCTCCTCTGTAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAGTTCTACGGTAAGCACATGAAGATGACATGCGTGGGCAACAGTGGTTTGCTCATGCTCTCCTTGAAGGCGAAGCGTATGAACCGCCTTGTTACTTACAACCTTTTCAAAAGGGAGTGGCAGAAGGTTCCTGATTGCATGCTACCATGCAGCCGCAAAAAGCAATGGATAGCATGTGGA | |||||||||
gi|9921327|gb|BE638221.1|BE638221 PI1_41_C10.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): TCCGGGCATCAAACTTCCACTTGCTCTAAATTTCAGGTCACAGCCTGTGGCGGTTGGCAGCACGGTATACTTCATGTGCGCAGAACCAGATGGTGTTTTGTCATATGATGTAAGCACCGGGATTTGGAGGCAATTTGCCATCCCACTGCCACTGCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGCTAGTGGGTCTGCTGTGCAAAAATGCAGCGACCTGCGTCTGCATATGGGAGTTGCAGAAGATGACTCTCCTCTGGAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAGTTCTACGGTAAGCACATGAAGATGACATGCCTGGGCAACAGTGGTTTGCTCATGCTCTCCTTGAAGGCGAAGCGTATGAACCGCCTTGTTACTTACAACCTTTTCAAAAGGGAGTGGCAGAAGGTTCCTGATTGCATGATACCATGCAGCCGCAAAAAGCAATGGATAGCATGTGGCACAGCGTTTGATCCGGTC | |||||||||
gi|7218477|gb|AW564599.1|AW564599 LG1_296_E04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GCACGAGGTGGAGGACCTGCTCCGCGCCTCCGCCGAGGTCCTTGGCAAGGGCGCCTTCGGGACGGCGTACCGGGCCGTGCTGGAGGACGCCACCACCGTCGTCGTCAAGAGGCTCAAGGAGGTGAACGCCGGCCGCCGCGACTTTGAGCAGCAGATGGAGCTGGTTGGCCGGATTCGACATGACAACGTCGTCGAGCTCCGCGCCTACTACTACTCCAAGGACGAGAAGCTGCTCGTGTACGATTACTACAGCAGGGGAAGTGTATCCAACATGCTTCATGGGAAGAGGGGAGAGGACAGAATGCCATTGGACTGGGAAACCA | |||||||||
gi|30963473|gb|CD220039.1|CD220039 CCC1_60_G09.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_60_G09_A00 TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): TACTGGAAGATAGTTATTCCAGCGGCATCCGTGGGTGGTCTTGTATGTTTATTGGATCTGAGCCACAGGAATTTCTACATTTGCAACCCTCTTATGCAATCACTCAAGGAGATCCCACCAAGATCAGTTCAGGGATGGTCAAGAGTCGCTGTAGGGATGGTGTTGAACGGAAGAAGTTCTAGTGATGGCTACAAAGTAATGTGGTTAGGAAATGATGGGACTTATGAAGTCTATGACTCTACAAAGAACATGTGGTCTTGCCCTGGATCTTTTCCTCCGGGCATCAAACTTCCACTTGCTCTAAATTTCAGGTCACAGCCTGTGGCGGTTGGCAGCACGGTATACTTCATGTGCGCAGAACCAGATGGTGTTTTGTCATATGATGTAAGCACCGGGATTTGGAGGCAATTTGCCATCCCACTGCCACTGCATCTGACTGACCACACACTTGCCGAGTTCCAGGGAAGGGTTATGCTAGTGGGTCTGCTGTGCAAAAATGCAGCGACCTGCGTCTGCATATGGGAGTTGCAGAAGATGACTCTCCTCTGGAAGGAGGTGGACAGAATGCCAAATATCTGGTGCTTAGAGT | |||||||||
gi|7535289|gb|AW671403.1|AW671403 LG1_342_F05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GCACGAGGATTTGGTGCTATGGCAAGCCTTTTTGCACCAAAGCTCCCAAGTGGCTTTGCTGCAAACCTATCTGGTGAAAAATCACCTGCTACAGATAAAATAAAGCCTATGAAAAGGGAAAGACAAGCAGTTAGACCACCTGTAGAGCATAAGTGGTCCCTTCCTGGAGTTGCTCAGGATGCCAAACCCCCAGCAATTTTTCAGCACGAGTTGATTCAGAGTTTCTCTATCAACATGTTCTGTAAGATACCTGTTAGCAAAGATCAGACCTACAAGGACCTGCGTAGTGTACTCATGAAAAGGATATTTTTGTCTGCCCTACATTTTCGAATCAATACAAGATACAAGAGGCTAAACCCTCCTTTTACGTCAGTTGAGCTAGGACCACAGTGACTCTGGAAGGGAAGGTTGCACGGACACTACTCTTACAGTAACTGCTGAACCCCAAAATTGGAGAAGTGCAATCAAAGTTGCTGTTCACGAGGTGCGAAGACTGAAAGAATTTGG | |||||||||
gi|9851266|gb|BE596193.1|BE596193 PI1_50_G03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TTGGCATTCTGTCCACCTCC EST sequence (targeted fragment marked with yellow): GCACGAGGGCCTCATCTCCCTCCCTCCCTCCGCCGGGTTCCCCGACCTTTGTAAACCCTAATCAAGTTCGCACCAAATCGGTCGCACCTCAGCTCAAAATCCGAAACGATTCGAACAATCAGAACGAAGAACGATTCAGCTTCAGCTCCTGAATCCAACAGCAATGGATCGCTCCCGCTCCAAGCGCGGCTACCACTACGACCAGGACTCCCCGCCTCCCCGCTCCAAGCAGCGCTTCGACCGCCGCAGCGGCGGCGGCGGCGGCGGTCAGAATGCTAACTCGAGCTACCACCGCCGCGGCCCCCCCAGCGGCGGCGGTGGCTCCGACCGCCGCGCGTTCCTGCCTCCCGACGCCGCGCCGCCCCCGCCCCCGCCG | |||||||||