| mature miRNA: TTGGGGTGAAGGGAGCTCCT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83991861|gb|DW137970.1|DW137970 CLSY5405.b1_I07.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY5405, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTAAAATTTTGCAAATTTAAATGGGGGAATGATTCCGGAAACCAAAATTGCCCCCTTAAAAAAGGGGGGGTTTTCCCCCCCAAAAAAGGAGAACCCTTTTTCTCTTCGGCTTTGAAGCGCAAAAGGATAAGGGGCCCCCTTCCCCCCAAAAAAGAGGGGGGGG | |||||||||
gi|83997314|gb|DW143423.1|DW143423 CLSZ2684.b1_H24.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSZ2684, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): CGGCGGGGATCATCTACATCTTCATGGCCATGGCTGCACAAGCTTCTCTCTTCACCCCAACGCTCTAAACCCTGTTTCTCCATGGAAACAGTCCTCCTTCACCGCCGTGAAGCAGCTCAAGCTCACCTCCCGTACCTTCACCATCAAGGCAGCAGCCGAAGAGGTTGCCACCCCCACTAAAGAAGCTCCAGTTGGATTCACCCCACCGGAACTCGACCCCAACACCCCATCTCCCATCTTCGCTGGAAGCACCGGTGGATTGCTCCGAAAAGCTCAGGTGGAGGAGTTCTACGTCATCACATGGGAATCCCCCAAGGAGCAGATCTTCGAGATGCCGACGGGAGGCGCTGCGATCATGAGGGAAGGACCTAATCTATTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTTTGGGAACTAGATTGAGGTCGAAATACAAGATCAAGTATCAGTTCTACAGGGTGTTCCCAAATGGTGAAGTACAGTATTTGCACCCTAAAGATGGGGTTTACCCGGAAAAGGTGAACGCCGGCCGACAAGGTGTGGGTCAAAACATGAGGTCAATTGGAAAGAATGTTAGCCCAATTGAAGTCAAGTTCACCGGCAAGCAACCATATGATATATGATGGATTTGTGATTATGTACTTCATTTCGTAATTAAAAAGATATGCTTTTTTATTGA | |||||||||
gi|22243757|gb|BQ858292.1|BQ858292 QGB9N21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB9N21, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GGGTCAAATCCATGGATGGCTAGATATGTTTATAGTGTGATGTTTCTGTTAGCAAATTTGCTTGCTTGGGCTGTTCGTGACTATGGGCCCACTGCGTTGACTGAAATGAACAAATTGAAAAGTTGCAAAGGTGGTGACGATTGTTTAGGCACCGAAGGCGTTCTGAGAGTGAGCTTGGGATGTTTCATGTTCTATTTCACTATGTTTCTTTCAACTACTGGCACCTCAAAATTGTATGGACAAAAAGAATTGTGGCATTCTAGCTGGTGGTCGGCCAAGATCGTTCTCATGATCGCGTTAATCATGCTGCCTTTCTTTCTTCCTACACAAATTATTCAGTTATATGGGGACATTGCACATTTCGGTGCAGGGGTCTTTTTGCTAATCCAACTAATTAGTATTATCAGCTTCATTACATGGTTGAATGAATGTTGTCTATCCGAAAAATATGCCGAGAGATGCCACATCCATTGGATGCTTCTTGCAACTACTGCATATGTTGTGTGCATATTGGGGATCATTTTAATGTACATTTGGTACACACCACAACCCACTTGCTTGCTTAATATTTTCTTCATCACATGGACACTTGTACTCCTCCAACTTATGACAAGTGTCTCCCTTCACCCCAAAAGTTTATGGGACTCTATGTTGGGTT | |||||||||
gi|90520966|gb|DY982824.1|DY982824 CLSS514.b1_D09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS514, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): CCAACACCTCACCATCTTCATCCATCTACAATCTTCAATGGCCATGGCTGCACAAGCTTCTCTCTTCACCCCAACGCTCTCAAACCCTGGTTTCTCCATGGAAACAGTCCTCCTTCACCGCCGTGAAGCAGCTCAAGCTCACCTCCCGTACCTTCACCATCAAGGCAGCAGCCGAAGAGGTTGCCACCCCCACTAAAGAAGCTCCAGTTGGATTCACCCCACCGGAACTCGACCCCAACACCCCATCTCCCATCTTCGCTGGAAGCGCCGGTGGATTGCTCCGAAAAGCTCAGGTGGAGGAGTTCTACGTCATCACATGGGAATCCCCCAAGGAGCAGATCTTCGAGATGCCGACGGGAGGCGCTGCGATCATGAGGGAAGGACCTAATCTATTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTTTGGGAACTAGATTGAGGTCGAAATACAAGATCAAGTATCAGTTCTACAGGGTGCTCCCAAATGGTGAAGTACAGTATTTGCACCCTAAAGATGGGGTTTACCCGGAAAAGGTGAACGCCGGCCGACAAGGTGTGGGTCAAAACATGAGGTCAATTGGAAAGAATGTTAGCCCAATTGAAGTCAAGTTCACCGGCAAGCAACCATATGATATATGATGGATTTGTGATTATGTACTTCATTTCGTAATTAAAAAGATATGCTTTTTTATTTCATGTTTGTGTGTTTTAATTTTAAAGCGAAGATTGTTCCACGC | |||||||||
gi|83997215|gb|DW143324.1|DW143324 CLSZ2583.b1_M22.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSZ2583, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): TCACAAACACCTCACCATCTTCATCCATCTACAATCTTCAATGGCCATGGCTGCACAAGCTTCTCTCTTCACCCCAACGCTCTCAAACCCTGTTTCTCCATGGAAACAGTCCTCCTTCACCGCCGTGAAGCAGCTCAAGCTCACCTCCCGTACCTTCACCATCAAGGCAGCAGCCGAAGAGGTTGCCACCCCCACTAAAGAAGCTCCAGTTGGATTCACCCCACCGGAACTCGACCCCAACACCCCATCTCCCATCTTCGCTGGAAGCACCGGTGGATTGCTCCGAAAAGCTCAGGTGGAGGAGTTCTACGTCATCACATGGGAATCCCCCAAGGAGCAGATCTTCGAGATGCCGACGGGAGGCGCTGCGATCATGAGGGAAGGACCTAATCTATTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTTTGGGAACTAGATTGAGGTCGAAATACAAGATCAAGTATCAGTTCTACAGGGTGTTCCCAAATGGTGAAGTACAGTATTTGCACCCTAAAGATGGGGTTTACCCGGAAAAGGTGAACGCCGGCCGACAAGGTGTGGGTCAAAACATGAGGTCAATTGGAAAGAATGTTAGCCCAATTGAAGTCAAGTTCACCGGCAAGCAACCATATGATATATGATGGATTTGTGATTATGTACTTCATTTCGTAATTAAAAAGATATGCTTTTTTATTTCATGTTTGTGTGTTTTAATTTTAAAGCGAAGATTGTTCCACGAATATGTCGATCTTGATATCTATGTATCATGCAAATTAACACCCAAAAAAA | |||||||||
gi|22235994|gb|BQ850525.1|BQ850525 QGB12N19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB12N19, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): CGCACAGATAACGAAATCAAGAACTTTTGGAACACTAGGACCAAAAGAAAGCAACGTGCCGGATTACCAATTTACCCTCACGACATCTCTTTCCAACAACTCAACGATAACTCCCAGAATCAAAACATGCTCATGTTCCCCAATGGCGATTCCGGAATTTTCCCACCAACCACTAACCTCCACATTCCATCCATCGATTACAAAGATTTCATACTAAATCATGAGTTTTATCAAAATCAAATTCCCACCGAAAGTAGCTTGCTTGATATCGCATTCCCTATGCCAACACCATATCCACCCAAGCGCTTCAGGCCCGGTGGCGGTGGTGGTGGTGGTCTTGGTGATGTTTTTTCTGGCTTGAATGGATATGAAGATGAGAAGATTGGTCAAACTTTGACCCCATCATCATCATCTTACTTATATAATACATGCACAGGTAGCCATGCCTTTATAAATGGCAACAATTGTTCATCTTTTGAGCCTAATTTATGGGCAATGAAGAATGAGCTCCCTTCACTCCAATATTTTCATGGTGCACCACCTTCTTCTTCTTCTTGTTCTTCCTTTGAAAATGAGTGGGCGGAATCTGATTTCCACTCACGTANGAACAGTGGTCTGTTAGAAGCTGTGCTCCATGAATCAGAAACCTTAAAATCTCGAAACCAGGAAATGATCTCACATGGTGATGATCAGAAATTGGGTTTCGGATGTTAT | |||||||||
gi|83986830|gb|DW132939.1|DW132939 CLSX9620.b1_G05.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX9620, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GGCGGGGGACTTATCATCTACATCTTAATGGCCATGGCTGCACAAGCTTCTCTCTTCACCCCAACGCTCTCAAACCCTGTTTCTCCATGGAAACAGTCCTCCTTCACCGCCGTGAAGCAGCTCAAGCTCACCTCCCGTACCTTCACCATCAAGGCAGCAGCCGAAGAGGTTGCCACCCCCACTAAAGAAGCTCCAGTTGGATTCACCCCACCGGAACTCGACCCCAACACCCCATCTCCCATCTTCGCTGGAAGCACCGGTGGATTGCTCCGAAAAGCTCAGGTGGAGGAGTTCTACGTCATCACATGGGAATCCCCCAAGGAGCAGATCTTCGAGATGCCGACGGGAGGCGCTGCGATCATGAGGGAAGGACCTAATCTATTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTTTGGGAACTAGATTGAGGTCGAAATACAAGATCAAGTATCAGTTCTACAGGGTGTTCCCAAATGGTGAAGTACAGTATTTGCACCCTAAAGATGGGGTTTACCCGGAAAAGGTGAACGCCGGCCGACAAGGTGTGGGTCAAAACATGAGGTCAATTGGAAAGAATGTTAGCCCAATTGAAGTCAAGTTCACCGGCAAGCAACCATATGATATATGATGGATTTGTGATTATGTACTTCATTTCGTAATTCAAAAGATATGCTTTTTTATTTCATGTTTGTGTGTTTTAATTTTAAAGCGAAGATTGTTC | |||||||||
gi|83986798|gb|DW132907.1|DW132907 CLSX9588.b2_H22.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX9588, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): CGCGGGGGACTTATCCATCTCATCTTCATGGCCATGGCTGCCAAGCTTCTCTCTTCACCCCAACGCTCTCAAACCCTGTTTCTCCATGGAAACAGTCCTCCTTCACCGCCGTGAAGCAGCTCAAGCTCACCTCCCGTACCTTCACCATCAAGGCAGCAGCCGAAGAGGTTGCCACCCCCACTAAAGAAGCTCCAGTTGGATTCACCCCACCGGAACTCGACCCCAACACCCCATCTCCCATCTTCGCTGGAAGCACCGGTGGATTGCTCCGAAAAGCTCAGGTGGAGGAGTTCTACGTCATCACATGGGAATCCCCCAAGGAGCAGATCTTCGAGATGCCGACGGGAGGCGCTGCGATCATGAGGGAAGGACCTAATCTATTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTTTGGGAACTAGATTGAGGTCGAAATACAAGATCAAGTATCAGTTCTACAGGGTGTTCCCAAATGGTGAAGTACAGTATTTGCACCCTAAAGATGGGGTTTACCCGGAAAAGGTGAACGCCGGCCGACAAGGTGTGGGTCAAAACATGAGGTCAATTGGAAAGAATGTTAGCCCAATTGAAGTCAAGTTCACCGGCAAGCAACCATATGATATATGATGGATTTGTGATTATGTACTTCATTTCGTAATTCAAAAGATATGCTTTTTTATTTCATGTTTGTGTGTTTTAATTTTAAAGCGAAGATTGTTCCACG | |||||||||
gi|22226407|gb|BQ845025.1|BQ845025 QGA15H23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGA15H23, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GACAGATGAAGAAAGAAAGGAAGCTGCAGACCAATCATTGAAGGGCTATGAGGCTGCTTCCGAGTCTGCAAATAAAGAGCTCCCTTCAACCCACCCAATTCGTCTTGGCTTGGCTCTCAATTTCTCAGTGTTCTACTATGAAATTATGAATTCTCCTGAAAAGGCATGCCAATTGGCTAAACAAGCTTTTGATGAGGCGATTTCTGAGTTGGACACTTTGAGTGAGGAATCATACAAAGACAGCACCTTGATCATGCAGCTTTTGAGAGATAATCTCACTCTTTGGACTTCTGATTTGCCTGAGGATGGAGGAGAGGAGAATCCGAAAGGTGAAGAGGCAAAATCAGCTGAACCAGAGAAGCAGTGATGAAAACCAGGCTGGTAAGGCTTTGAAGTATTAACAAGTTTTGCTTCTTGCAAAGTCTCTTGCTATTTTTTAGAACGGGAATCAGATGCTTTTTGGTTAACTTCTTTTAAGTTTAGTCTCGTTGAACTATGCACATTGATGTTCTTTTATGCCATATTTTTCCAATTGCA | |||||||||
gi|83996591|gb|DW142700.1|DW142700 CLSZ1956.b1_G09.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSZ1956, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): AGGGAGAGAGAAATCTGAAAATAAGAGAGATGACGATCGGAATAATGGAGGTGAATCTGGTGGATGCTCGTGGTCTCAGCAATTCTGATTTCCTCAATAAAATAGATCCATATGTGTTGATTCAGTACAAGAGTCAAGAACACAAGAGCACTATAGCCAAAGGGCAGGGAAGCAAGCCAAGCTGGAATGAAACATTCAAATTCAGGGTGGAATTTCCAGGATCAGATGAACAACCTAAGCTTGTTCTCAAGATAATGGACCATGATACATTCTCATCTGATGACTACATTGGACAAACAACAATATACTTGAAAGAAGTACTGGAACTAGGAGTGGAGAATGGAAGGTCTGAGCTACGTGCTCAAAAGTATAGTATTGTGGATAGTAGCCAAAGCTATCGTGGAGATCTTCGAGTGGGTGTCTCCTTCACCCCAAGGGTGGAAAATGAAAGTTATGCACAAGAATTTGGAGGATGGAAAGAGAGCCAATGGTAGTTAGTTTGTGGGTAATCCTTTGGTTTTTCTGTTTGGAAAATGTTTAAGTTTTGAGTATGTGAATTTTAGATGTTCGAAATGTAAATTGTATTTCCTTGTTTTAGTGGTCAAAGACTCGAAATGTTCATGGAACTTGAAAT | |||||||||
gi|83987875|gb|DW133984.1|DW133984 CLSY1465.b1_B08.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY1465, mRNA sequence TTGGGGTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GGCGGGGACTTATCCATCTACATCTTCATGGCCTGGCTGCCAAGCTTCTCTCTTCACCCCAACGCTCTCAAACCCTGTTTCTCCATGGAAACAGTCCTCCTTCACCGCCGTGAAGCAGCTCAAGCTCACCTCCCGTACCTTCACCATCAAGGCAGCAGCCGAAGAGGTTGCCACCCCCACTAAAGAAGCTCCAGTTGGATTCACCCCACCGGAACTCGACCCCAACACCCCATCTCCCATCTTCGCTGGAAGCACCGGTGGATTGCTCCGAAAAGCTCAGGTGGAGGAGTTCTACGTCATCACATGGGAATCCCCCAAGGAGCAGATCTTCGAGATGCCGACGGGAGGCGCTGCGATCATGAGGGAAGGACCTAATCTATTGAAATTGGCGAGGAAGGAGCAGTGTTTGGCTTTGGGAACTAGATTGAGGTCGAAATACAAGATCAAGTATCAGTTCTACAGGGTGTTCCCAAATGGTGAAGTACAGTATTTGCACCCTAAAGATGGGGTTTACCCGGAAAAGGTGAACGCCGGCCGACAAGGTGTGGGTCAAAACATGAGGTCAATTGGAAAGAATGTTAGCCCAATTGAAGTCAAGTTCACCGGCAAGCAACCATATGATATATGATGGATTTGTGATTATGTACTTCATTTCGTAATTAAAAAGATATGCTTTTTTATTTCATGTTTGTGTGTTTTAATTTTAAAGCGAAGATTGTTCCAC | |||||||||