miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGGGTCGTATCACAAGGTTGAACT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73880435|gb|DT483173.1|DT483173 WS02521.B21_N19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_N19 3', mRNA sequence 

TTGGGTCGTATCACAAGGTTGAACT
 ||||.||||||||||| || ||||
TACCCGGCATAGTGTTCGAAGTTGA

EST sequence (targeted fragment marked with yellow):
AGCAGATCAGACAGTTGATGAGATCAAAAGGGCTGCTACCATTCTTGGACAGTGCTTACCAGGGTTTTGCTAGTGGTAGCCTAGATGCAGATGCAGGGTCTGTTCGCATGTTCGTTGCAGATGGCGGTGAATGTTTCGCAGCTCAGAGTTATGCAAAAAACATGGGCCTCTATGGGGAACGTGTTGGTGCTCTCAGCATAGTTTGCAAGACAGCAGATGTTGCAAGTAGGGTTGAGAGCCAGTTGAAGCTTGTGATACGGCCCATGTATTCTAATCCACCTATTCATGGTGCATCAATTGTGGCCACCATTCTCAAAGACAGGGATATGTACAATGAATGGACTGTTGAGCTGAAAGCAATGGCTGACCGGATTATAAGCATGCGCCAACAACTATTTGATGCTTTATCTGCTAGAGGCACTCCTGGTGACTGGAGTCACATTATCAAGCAAATTGGAATGTTTACCTTCACTGGCTTGAACACTGAACAAGTTGCCTTCATGACCAAAGAGTATCACATATACATGACATCTGATGGGAGGATAAGCATGGCAGGTCTTAGTTCCAGGACAGTCCCTCATCTGACAGATGCCATACATGCTGCTGTTACCCGTGTTGGCTAAAATCAACAGATTTTTGGTCTATATATAATAAGAACTCTCTGGATTGGAGGCTCCGCTTCTGGGGATCTTTTTCCCAACTTCGTTTGAGCGGATGCGATGTTTTCATTAAGACTTGAGAAGATGCCATTTTCCTTTTGAGACAGTTATGGCTTCTTCTCTTTTCCCCGTTGTTATGTTATTGGCTCGCCTTAAAAGGCAAAAAAAAAAAAAAAAAA


gi|52400807|gb|CV238790.1|CV238790 WS0128.B21.1_B05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0128_B05 3', mRNA sequence 

TTGGGTCGTATCACAAGGTTGAACT
 ||||.||||||||||| || ||||
TACCCGGCATAGTGTTCGAAGTTGA

EST sequence (targeted fragment marked with yellow):
AAGTAGGGTTGAGAGCCAGTTGAAGCTTGTGATACGGCCCATGTATTCTAATCCACCTATTCATGGTGCATCAATTGTGGCCACCATTCTCAAAGACAGGGATATGTACAATGAATGGACTGTTGAGCTGAAAGCAATGGCTGACCGGATTATAAGCATGCGCCAACAACTATTTGATGCTTTATCTGCTAGAGGCACTCCTGGTGACTGGAGTCACATTATCAAGCAAATTGGAATGTTTACCTTCACTGGCTTGAACACTGAACAAGTTGCCTTCATGACCAAAGAGTATCACATATACATGACATCTGATGGGAGGATAAGCATGGCAGGTCTTAGTTCCAGGACAGTCCCTCATCTGACAGATGCCATACATGCTGCTGTTACCCGTGTTGGCTAAAATCAACAGATTTTTGGTCTATATATAATAAGAACTCTCTGGATCGGAGGCTCCGCTTCTGGGGATCTTTTTCCCAACTTCGTTTGAGCGGATGCGATGTTTTCATTAAGACTTGAGAAGATGCCATTTTCCTTTTGAGACAGTTATGGCTTCTTCTCTTTTCCCCGTTGTTATGTTACTGGCTCGCCTTACCTGACTATCGCTGTGCTTTTGAAGGATTGGTTGCGGTAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA