| mature miRNA: TTGTGGCTTTCTTGCAAGTTG species: Saccharum hybrid cultivar SP70-1143 database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34959209|gb|CA105902.1|CA105902 SCJLHR1026C02.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCJLHR1026C02 5', mRNA seq TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): GGCCCGGTANGGCCAGGTCGACCCACGCGTCCGCAGCAAGCTCGTCAGATCCAATGGGTGCTGCAGATCCTGTGTGGACTGAAAGCTACTGGAACACTATTGGCCTCATGGTCTACGCAGTGCAAGATTCAGCTTACGATTGGCTTATTCTTCTTGCCGGGCTCATTATCACTGCTGCATCTTATTGCGGTGTACACTTTGGCAGAACATACATTTCAAAGGTGGTGAAGCGTGACTGAAGCGTCAGTGAGCTGCTCCATTGATTCTGGGTATTTAGAGCTGGAAATAGAACTAATTGAGCTGGCAATTTGTAGACATTGGTCATTAGCGGCACATGAGTCAGGGTGATTGAACTGCGAGAAAGCCACAATGAATTATGAAGCCTTCCAGCTAAGGAGGAGCTCGTGGGTGTTGTCCGTCATCATTATTCGGACGTCCAGGTTAGAAGCCCTTTGTCTTGTGCCGATGCAATATGAAAGTGTGCCCCTGGCACGTTTGGTACTGAACTGGTAGGTAGATTATGAGACGCCTCTACCTCTAGCTCTAGGTGGATGTTTCCAGGAACGTGTGTTTTTCTCTGTTTGTGGATGCTGCGTACTCGGTTTTGGTTGCGTATAAGCCTGTTCCTTACGAC | |||||||||
gi|34959223|gb|CA105916.1|CA105916 SCJLHR1026D11.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCJLHR1026D11 5', mRNA seq TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): TCCTTCTAGACACTTCGATGCGCCCAGCGCCCGTTATAAAAGGCCGGCCACATCCGGGCGACGGCGCATCAGCTCCCGCTCACAGGTCACAGCCCCTTGCTCATTGGATGACTGGATGGGGCGGACGGAAATCGCGAAAGGATGCCAAGGTATAGGAGATGAGATAGAAGATCTTCTACTGCAAGTCACAAAAAAGAAGAAGAAGAAGAAGAAGATCTTTTACAGCTTCTCCATCTGCAACTTCCTTTGTTCCAAAATCATTCATTTCTCAAGCAGTTCAACATTTTGTTGCTGGCCGGTCTGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTATTGATTAACAGGATTCAATCAGTTGTTGCTGGGGTAGTCTACAGCAAATACATGGGTTTTCTTTATTGAAAGCTAACATGCCTTTGCTTCCGTGCATTCTCTTTTGAAAGGCAATGAAGTGGACCATCGGATGGAGATCTGACTGGCCATGCTGATAGAAACTGGCTTTGAATANCCTTTTNCTAACTGCCCACTCCAACGGTGTTGGAACCATGCTCCCCAACCCAACCGATCATTTTTTGAACCGCTTCTTGTGGTGGTACCAAAAAATGGGGCCAAAAGGGTTGGTTTTTTGGGATTAAAGGGTGTGAATTTGGGNATAAAAGGGCCTAACAACCCCCCGGACCGATTTCTCTGAGCCCAGGAGCTCACCCAAAAACCCTTTTATTTTCTTGAAACTTTAAATTTTTTTTAACCATAAA | |||||||||
gi|34920447|gb|CA068923.1|CA068923 SCSBAD1050A10.b AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCSBAD1050A10 3', mRNA seq TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CCATATAGGAATATTTTTGTAATAGGCATGTATAACTTGACTGATTAATCATAGGAATACGTATATATATATAATAACCCTTTAATAACCCAATGCATTGATGCATGCATGCGGATATTATATAGTATAATGATGATACATCATATAGTGGTACATATATATGCAGTGATGATCAGAAATGGGCTTAATNTACGGGCACGTGAAGCTGGAGGGCACGTGCTTGCCGCACTCGTTGACGAGCACCGAGATGGCGACGGGGAGCACGACGCTGACGCTGAGCGCCTTGGCCTTGATGGTGGTGCAGAGGCAGAGCGCGGCGTCGAGGTCGGCCACGCCGGAGAGCAGCGGGCAGCAGGTGTCGCTGGCCTTGGTCCCGACGACGGCGTGCACGAGGCCGTTGAGCGCGTCCACGCACGCCAGCAGCTTCAGCGTGTCCACGGGGCACTTGCCCGTCGGCGTGGACGGCGTCGGCGTCGGCGAGTAGGGCGGGGGAGGGCACGGCGTGGACGACGGCGGCGGCTTCACCTTCGGGGGCGGCGGCGGCGGCGGCTTCGGCGTTGGGCAGTAGGGGCACGCCGCGGCCTGCGCCAGCAGCGTGGCCGCGACTAGCAGGAGGGCCACAATGCGGCGGCGGTTCGTGGTCGTGGCCATGGCGCGCGGCGCGGC | |||||||||