| mature miRNA: TTGTGGCTTTCTTGCAAGTTG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166792496|gb|DV734310.1|DV734310 SUS01-136-A01-A-002.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): ACATCAGCACCCGCTTACAGGTCACAGCCCCTTGCTCATTGGATGGATGTGGCGCGGACGGAAATAGCGAGAGGATGCCAAGCATTCATTTGTCAAGCAACATTTTGTTGCTGGCCGGTCTGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATAAATTGCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTATTGGTAAAACAGGAAGTACTGTCAGTTTCTGAGCTACAAAATATAAGTGTAGAAAAATAATTTAGAAATATTAACAGGATTCAATCAATTATTGCCGGGGTAGTCTACAGCAAATGCATGGGCTCTCTTTTATTGAAAGCTAGCACGTGTTTG | |||||||||
gi|36069657|gb|CA298719.1|CA298719 SCSFFL8045E11.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCSFFL8045E11 5', mRNA seque TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGTACATTTCAAAGGTGGTGAAGCGTGACTGAAGCGTCAGTGAGCTGCTCCACTGATTCTGGGTATTTAGAGCTGGAAATAGAACTAATTGAGCTGGCAATTTGTAGACATTGGTCATTAGCGGCACATGAGTCAGGGTGATTGAACTGCGAGAAAGCCACAATGAATTATGAAGCCTTCCAGCTAAGGAGGAGCTCGTGGGTGTTGTCCGTCATCATTATTCGGACGTCCAGGTTAGAAGCCCTTTGTCTTGTGCCGATGCAATATGAAAGTGTGCCCCTGGCACGTTTGGTACTGAACTGGTAGGTAGATTATGAGACGCCTCTACCTCTAGCTCTAGGTGGATGTTTCCAGGAACGTGTGTTTTTCTCTGTTTGTGGATGCTGCGTACTCGGTTTTGGTTGCGTATAAGCCTGTTCCTCACGACACTCATGGATTTGCGCACACCAATTATTATACTGGTACTCGCATGCAGATTGGAGCTAAAANAANAAAAAAAAAANAAAAATAAANAAAAAAAAAAAAAAAATTTAAAAGGGAATATATNTTTAAATGNTGATAGANAAAAATAATAAAAAAG | |||||||||
gi|36060144|gb|CA295530.1|CA295530 SCRLLV1024E08.b LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCRLLV1024E08 3', mRNA seque TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): TTGTATCTCCACCCAGGTATGTCCCTGCATATTCAACTCGGGTGAAATTTGAGGACAATGCATGGCACGTTCTTCCAGCAAGCTCGTCAGATCCAATGGGTGCTGCAGATCCTGTGTGGACTGAAAGCTACTGGAACACTATTGGCCTCAGGGTCTACGCAGTGCAAGATTCAGCTTACGATTGGCTTATTCTTCTTGCCGGGCTCATTATCACTGCTGCATCTTATTGCGCTGTACACTTTGGCAGAACATACATTTCAAAGGTGGTGAAGCGTGACTGAAACGTCAGTGAGCTGCTCCACTGATTCTGGGTATTTGGAGCTGGAAATAGAACTAATTGAGCTGGCAATTTGTAGAACATTAGCGGCACATGAGACAGGGTGATTGAACTGCGAGAAAGCCACAATGAATTATGAAGCCTTCCAGCTAAGGAGGAGCTCGTGGGCGTAGTCCGTCATCATTATGCGGACGTCCAGGTTAGAAGCCCTTGTCTTGGGCCGATGTAATATGAAAGTGTGCCCCTGGCACGTTTGGTACTGAACTGGTAGGTAGATTATGAGACGCCTCTACCTCTTAGCTCTAGGTGGATGTTTCCAGGAACGTGTGTTTTTCTTCGTTTGTGGATGGATGCTGCGTACTCAGTTTTGGTTGCGTAT | |||||||||
gi|268792463|gb|DV639595.1|DV639595 SUR01-162-F02-A-015.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CTCTCCAGCAACTTTCACGAAAACCACAATGTCCCATTCGCATTCGCATGCCCCAGGAGACCACTCCCATTCTCACTCCCATGGACCTTCTCCTCAGCAACAGCAACAGCAGCAGCAGCAAATGATGATGCCAGCACCAGATCCAACTCTTCAGGCCATCATCGACGCTTCATACCAGCCAGTAGATCTTGCCGTTCTTCCCGACCTCCCAGCTGTCGTTTGCGGTCCTCACAAATCCGAAAAATGCGAGATCTGTAAACAGGACTATGTCGGTGTCAACAGACTGGCCAAGATATTACACCAAAATCCTTCGCTGACAGCACCTCCGCCTGCGAACGTGGTCAGCAAGAATTTAAGTGTAGCTGTTGGGAATACGAAGGAAGAGGGAAACCAATTCTACAAAAAGCAACAGC | |||||||||
gi|36014769|gb|CA282606.1|CA282606 SCCCNR1002A11.g NR1 Saccharum hybrid cultivar cDNA clone SCCCNR1002A11 5', mRNA sequence TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CCAGAGTGCTCGCAAAATCGCATCTCAGAAGGGAAAAAAAACCCTTAAAAAGAGAGAGGAGCTGCTGCTAGCTCTGTCTCTCTCTCGCTCCCTCGCTCGTGGCCTTGTTGCATGCCCAATTGCAGGAAAGCCACAAACTCTCGTGTTCCAGGGGCAGGGGCAGAGGATCTCTCGCGAATCCACCAGTAAACAAACTCGTTTGGCTGGCTCGTTAACCGAAGCGGCGAGGAGCGAGAGGGAGGCGGCGGTGTACGGAGCAGCATGAGGCCGCAGCCACATCCATTGCCGGTCCTGTGCTCTCCCGTCTTGGCCCTCCTCCTGCTCCTGGCCGCGTGCTCGTCCCCGGCAAATGGGAGGGCCGCGCCGTCGTCTCCGGGCGCTGCTACGCCTGTCGCCAGGCTCGTCCACGCCGCCGACGCCGCTGCAAGCGGCGCCAATGGGACCGCCTCCGTTGCTCCGGCGCCGCCTCCCGTTGTGATCATCGTTGAGCGGCGCCATCAATTCCACCGCGAGCTAGTCATCGCCTCCGTCCTCGCCTCCATCGCCGTCGTCGCGATTATCCTCTCCACGCTCTATGCGTGGATCCTGTGGGCGGGGTCTTCGCGGCTGCCCCGCGGCAAGAGCGTCAGGAGCGCAAACACCGCGAGGGGAATCATGCTGGTGCCGATCCTGGAGCAGTTCAACTCACTCAAGACGAGCCAAGAAGGGCCTGGGGGCGAGAACGAGTACCCATCGTTGGAGGCGGCGGACCCAGGAGGTCCAGGGAAAACAAGGGGGGCTCGGGTTGGGCGGCTTTGGGTGCCGCTTACCCAGGAGTTTTCCCAAAGGGCGGGTAACCCGGGG | |||||||||
gi|166793542|gb|DV734386.1|DV734386 SUS01-140-E09-A-069.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): ATCAGCACCCCGCTTACAGGTCACAGCCCCTTGCTCATTGGATGAATGGATGGGGCGCGGACGGAAATCGCGAGAGGATGCCAAGCATTCATTTGTCAAGCAACATTTTGTTGCTGGCCGGTCTGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTATTGGTAAAACAGGAAATTAACAGGATTCAATCAGTTATTGCTGGGGTAGTCTACAGCAGATGCATGGGCTCTCTTTATTGAAAGCTAGCACGTCTTTGCTTCCGTGCACT | |||||||||
gi|36034992|gb|CA287375.1|CA287375 SCMCSD2060H01.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCMCSD2060H01 5', mRNA seque TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CCGGCCACATCCGGGCGACGGCACATCAGCACCCGCTCACAGGTCACAGCCCCTTGCTCATTGGATGACTGGATGGGGCGGACGGAAATCGCGAAAGGATGCCAAGTTCAACATTTTGTTGCTGGCCGGTCTGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATCGCATGACATACTTGTGGTTGTCTTGCATGTTGCGCAACAGGCGCCTCAAGCTTGCTGCCTACCTTTGCCAGAGCTATTGATTAAACAAGAAGTACTGTCAGTATCTGAGCTACAGAATATAATTGATGAAAAATCATTATTAAATCTATACAAGATTCAATCAGTCTTCGCTGGAGTAGTCTACATCTAATTCATAGGCAACTTTTCTCGTAAGCATACATGCATGTGTTATCCAGCGTTCTGTTCAGAGATGCGATTGAAATGGACCATGTGATGGAGATCTGACACACCAAACTGATACAATGCTGGCTTATGTATCCGTAGTCTAACTGCCATCTCCAACGGCGATTGAGCATGCTCCTCATCCAACTCATCACCTATGAACGTCTCTGGTGGTGTACCACTGTGGGGTCTGTGTAAACTATGATGATGTAGGGCTCGTTTAGCTACTGAAATTTTTTGCGTCATTGC | |||||||||