| mature miRNA: TTGTGGCTTTCTTGCAAGTTG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30969053|gb|CD225619.1|CD225619 CCC1_40_E06.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_40_E06_A00 TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CACCCGCTCACAGGTCACAGCCCCTTGCTCATTGGATGAATGGATGGGGGGCCGGCGGACGGAAATCGCGAGAGGATGCGAAGACATTGGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAGCTCATTTCAAGATGGCTCTCTAAACTTTGGAGAATCAATTGCAGACCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTATTAGTAAAACAGGAAGTACCGTCAGTTTATGAGCTACAAAATATAAGCATAGAAAAATAATTTAGAAATGTAAGCATAATATACTAGTACATTGCTAAAGATAAATCAATACTCAATAACTTCCACATGCTTTGGATTTAAATACAAGTACATTGCTAAAGATAAATCAATAACTCAATAACTTCCACATGCTTTGAATTTTGGGTAACATACTAGCACATTGCTAAAGAAGTAAAGATAAATCAATACTCATTCCACATGCTTTGGATTCTGGTTAACATACTAGTACATTGCTAAAAGATAAATCAATACTCAATAACTTCCACATGTCAATGATATCTTTTGCAGATTAACAAGATTCAATCAT | |||||||||
gi|30944063|gb|CD209699.1|CD209699 HS1_54_H09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_54_H09_A012 3', mRNA TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): AGGTAATTTTAAACTTTCTATTAATAACTAACTAAATATGTACAAAATTGGTTAAATTAACCATGTCCATTTGTATAACTCCAACTTCAGAACTATTTTGAAATTCCTTCCAGCACAGTATTATGGTTGCTTTTGGTCCTTGTTCGCAACTCCAAAATGTTTATATCCTCTTCTTGGCAAACATGTTTTACTTCTATTTTATGATCTCAGCTGCAAAATTGCAGCCACAGCTGGCAAGAAAGCCACCACTGACACGGAGCATGTTTCAGGAGAGCCATACAAAGAGCTACTCAACTCCTTCGTCAAAGTAATCTACAACGGCCAACCAACAAAGTCAGGATCTCGTAGTCAAATCTCATAAAAATGACTTGAATGCATGTTAACAAAACCCCAGCAAAGAACAAAATAGTTAGGCCTTGCATCATGACAAAAAGTGCCAAAGAAGCTTTGCAACACAAAATGCATAGAAATTCCCTGCATCCACAATTTTTTGTCATCCCATGATATAGGTAGAATGATTTAGTCGCATCAAGCAGGTATTCCTCAACATAACCACATTTGAAAACTAAAGTGATCTATTCAACTATTACTCTCCAACCAATAGCAGACTCACCTTGTACTCTCCAAAAAATAGTGGATCATGTCAGTGTACTTGAAGAAACAACCTTTCTCTGTCAAAGTCAAACTCATGTACTATTC | |||||||||
gi|9851777|gb|BE596704.1|BE596704 PI1_58_F04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): GCACGAGGGCTATCTCAACTTCGTCTTGCTTCTTCCTGTGCTCCTTTTTGTTCCTGGACGGCTAATAACTAGATCTGAGAGGCAGAAAAAAGAGGGATGGGGAGGGGGAAGATAGTGATAAGGAGGATCGACAACTCGACGAGCAGGCAGGTGACCTTCTCTAAGAGACGGAACGGGCTGCTGAAGAAGGCAAAGGAGCTCTCAATCCTCTGCGATGCGGAGGTTGGCCTCATCATCTTCTCCAGCACCGGAAGGCTCTACGAGTTCTCCAGCACCAACATGAAAGCTGTGATAGACCGATACGGAAAGGCAAAAGAGGAGCAGATTGGCACCAACAATGCAACTTCAGAACTCATGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAACTGCACAACTTGCAAGAAAGCCACAAGTATGGTCTGCAATTGATTCTGAAAAAAAAAGGATCACTCATCAATAGGAAGTTTCAATGACACATGAAAAACTTCATAGAACATAAAAAAGTGAAACGTTTCAACCAAGGATTAAGTAAATATATAGTTATTGAAGACATTAACAACATTCATTATTTCAG | |||||||||
gi|37709451|gb|CF760226.1|CF760226 DSAF1_57_A09.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_57_A09 TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): GCTCACAGGTCACAGCCCCTTGCTCATTGGATGAATGGATGGGGGGCCGGCGGACGGAAATCGCGAGAGGATGCGAAGACATTGGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAGTAAGATACCAAAGCTTGTGGTTCATTATAAGGTGTTTTAGTGCTGCCTCTTTGTTTTTTCCAACCTCTTGTTCCACAAACAGCCCTCTAGCTTGTATGTAGTCCTGTGATTCACCTTTATGGCCTTTAAGTTGACCATTATGGGCCTTCTTCCTCCTGTGTACCCTTCTGTACAGCTCAGAATTTGTAATTTTTCTGCTCATAAATCAGAGTTGTTTTATGAGGAATGAAAGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|37753719|gb|CF769900.1|CF769900 DSBF1_4_B10.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_4_B10_ TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): GAAATTTTTTGGATTTTATGGTGAACTAAACAAGGCCCAAGTTTTGATAAAGTCGACGGCGGGAAACACAAAGACACGGCATATTTTGTCAACGAACGCTGTTGAAATTGAGTGACCAATAGGGGAAAAAAAAATTGTGCGGCAAGGAACTGTGTAGCGAGCACTCACCCGAAGGCTTCGTGGCCAAATATTCTGGGGAAAATGCCAGGGAAATCCTGCAAAGTTCACACAAACAGACGAAGTATACGACACTCGTGAGGCGGTGTAGGCCACGGCGGTGAGGGCCACAACAAGGTCGATGGCCGGCGATTTGCAGGAAAGCCAAACCTTCATGCGCCAGAACGTGACGTCGCTGTGGCAGAGCGACGTGCAGATGATCCTTATCCTGACCTCGTGCTCCTTGGGCGGGTCCACGACGATCTCCTCGATGGCCAGCGGCTCGCCGGCGGCCCTGCACACGGCCGCTTTGCATCGGATTGGTTTGGGGCCATGGTTCTCCATCGAGGATGCAGAAGACTCGCCGGTGGTGCCCAGTAGATGCGTTCGAAGGGCGCACGGTGTGGTTGCGAGAGACCAGAGCCAGAGCAGGCATCGA | |||||||||
gi|18061262|gb|BM323459.1|BM323459 PIC1_19_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): GCACGAGGGCCTCTAGCGCTAGGCTACCTAGCTTCCCGTCTCTTCCCCATCAGATCAATCGTCCTGGCCGGCTATCTCAACTTCGTCTTGCTTCTTCCTGTGCTCCTTTTTGTTCCTGGACGGCTAATAACTAGATCTGAGAGGCAGAAAAAAGAGGGATGGGGAGGGGGAAGATAGTGATAAGGAGGATCGACAACTCGACGAGCAGGCAGGTGACCTTCTCTAAGAGACGGAACGGGCTGCTGAAGAAGGCAAAGGAGCTCTCAATCCTCTGCGATGCGGAGGTTGGCCTCATCATCTTCTCCAGCACCGGAAGGCTCTACGAGTTCTCCAGCACCAACATGAAAGCTGTGATAGACCGATACGGAAAGGCAAAAGAGGAGCAGATTGGCACCAACAATGCAACTTCAGAACTCATGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAACTGCACAACTTGCAAGAGAGCCACAAGCAACTAATGGGAGAGGA | |||||||||
gi|33110737|gb|CF074078.1|CF074078 FE1_21_B10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_21_B10_A002 3', mR TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): TTGGAAGCCTAATCTGTTTTGGTATTTTATTCTTTGGGATGCATTACATATTGCAATACCTAAAGCTTTATTTGGTATGAAGTACTATTACATGATTTCACTATGGACAGTAAGGAAGAAAGCTGAAGTCATCCTGTATGAATATAAGATTTACACCAAACCTAAACCACCACCTACCAGACACATACTGACCATAGTCCAGCAACATGGTAAGTGGTAACCAGCTGCTGCATCAAAGTGACCACAGCAGTAAAAAGAGGAGGCACATCTGGGGAGCTTGTTGAATGCCGGTGAAGTATATGATGACCCTGATAGCCTTCAAGGCATCAACGCCGTGAATGGATAAATACTGGTTTACAAGAAGAGTTCATATCTCCGAATCCAATGAAGTTGGTTTTTCTACCACATCTGCGAATCTTATTTGTCGTGGCCTGGGAGGTTTATGATCATTCTCCTTTGGTTGCATTGTCACCCAGGGAGCTTGTTTCTTTGATTGTACTTGAATTCCAAGAAAAGATGGCAGAGGTGGCTTATTCGTCACAGATGGCAAAGTGCGAGAAAGCCATGACTC | |||||||||
gi|30965472|gb|CD222038.1|CD222038 CCC1_1_C06.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_1_C06_A007 TTGTGGCTTTCTTGCAAGTTG EST sequence (targeted fragment marked with yellow): CCCGCTCACAGGTCACAGCCCCTTGCTCATTGGATGAATGGATGGGGGGCCGGCGGACGGAAATCGCGAGAGGATGCGAAGACATTGGCGTATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGACCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAGCTATTAGTAAAACAGGAAGTACCGTCAGTTTATGAGCTACAAAATATAAGCATAGAAAAATAATTTAGAAATGTAAGCATAATATACTAGTACATTGCTAAAGATAAATCAATACTCAATAACTTCCACATGCTTTGGATTTAAATACAAGTACATTGCTAAAGATAAATCAATAACTCAATAACTTCCACATGCTTTGAATTTTGGGTAACATACTAGCACATTGCTAAAGAAGTAAAGATAAATCAATACTCATACCACATGCTTTGGATTCTGGTTAACATACTAGTACATTGCTAAAAGATAAATCAATACTCAATAACTTCCACATGTCAATGATATCTTTTGCAGATTAACAAGATTCAATCATTTGCTGGGGTAGTCTACAGCAAATGCATTGGTTCTCTT | |||||||||