miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTAGTCCCGGTTGGTGTATC
species: Saccharum officinarum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|190360412|gb|ES697536.1|ES697536 DrSHF 221 Saccharum officinarum Expressed sequence tags from the Forward SSH library Sacchar 

TTTAGTCCCGGTTGGTGTATC
|||||||||||||||| ||||
AAATCAGGGCCAACCA-ATAG

EST sequence (targeted fragment marked with yellow):
ACGCGGGAGGTAGAGAGTTTGAAATGGCTCGGGCTGGGGGAGAATGAAGGAGAAAATATATAGCCCAAGACATGTAGTCCCGATTTGTGGTGTAAACCCGCACTACAGGTAGCACTAGTGCAGGACTGGGTAGCAATCCTAGTTGGGAAACCCCCTCTAGTTCAAGTTTTCCAACCGGGACTGCCAATCTAGGACTAAAGGCCCACCCTTTAGTCCCGGGTCTGCTAACTGAGATTGAATGGGGGCCCTTTAGTCCCGGTTGCTTATACCAACCAAGACTAAAGGGACCTCTAGGACAACCCTGAGGACGAGCACCTCCAGATCCGGTTGGATAACCAACCGGGACTAAAATTACTTTTTGTTTTTTCTTTTCTTTTTCTTTTGAATTTTTTTTTT


gi|36020806|gb|CA284192.1|CA284192 SCSFSD1064D02.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSFSD1064D02 5', mRNA seque 

TTTAGTCCCGGTTGGTGTATC
|||||| ||||||||| . ||
AAATCAAGGCCAACCAAGGAG

EST sequence (targeted fragment marked with yellow):
CACAGGTAGCTAGCACTAGCATATCGCATCCACAGCTCCAATCAGCCACATGAAATTTAGGGGGAGAATTGGGGAACTAAACATGGCCACACTTAAACTGCGATGGCACCAGTGTCGGAGGCCGCTAGCTACCTCGAGCTCCTCCAAGGCGGCAGCATTGCCTCCTCCTTGGGTGCCGTTTACAACGCGCCTTGGGACGGGTACCGCAGCGCGCGGGGAAGGGTGTCGGAGACCGACAGCGACGACGATGACGACGACTACGACTGCGCTCCTGCTGCCTGATCGACAACCCGCCGCGTTCGGGTGAAATTGATCTGTGTTTCTGAGATAATGAGATATGCTGCGCGTACGTAGGCGGTAGGCGCGAACCGCCAAAGACCATGTANTAGTACTAGCTACGTACAGATTATAGTACGTGCCAGTGCTTCTATCAGGCTAATACCTGATCTTTGCTGCATCGTCCAAAAGACCTTTAGCCTCGGAGATTCCGGCGACCCGGACTAAATATCTTTTAGTTTCGGCGGGAGGAACCAACCGGAACTAAAGGGCCCTTCTTACGGTTTTTTTTTAAGCCTCTT


gi|36021457|gb|CA284264.1|CA284264 SCSFSD1064D02.b SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSFSD1064D02 3', mRNA seque 

TTTAGTCCCGGTTGGTGTATC
|||||||||||||||||||||
AAATCAGGGCCAACCACATAG

EST sequence (targeted fragment marked with yellow):
GAAGAAACCATCTAGTTGGGCCAAAACGTGAGACACGCACCCTTCTTGGGTCCGGTTGTCGAGCACGATGGGACGGGGTCACTCACGCACCCGAAAAGTCTGTCTGAGACACACACCACCGCCGCGCTCGGGCGCTACGACACGCGCGCTTCTGTGTGAAGAGCAACCCACCGCGGTCGGGGGAAAAGAAGCCCCCTCTCTGAAAAAAGAGAAAAATGTCGGGATACACACGTCTGGATCGCAAACCCGCCACGCACGAGGAGTACGATCTACGGTCACAATAGAGTGCACACCGCTGCTTCTATCTAACGCATAACCGATCTCTCCTCGATAGCCCCAAATACCTATAGTCTCGGTGAGAACGGCGACCGGGACTAAATATATCTTAAGGTTCGCGTCAGTCTCCCCACCGGGAACAAAGGTCCCTCTCCCGCGGCTTAATTCTCAGGCCGTGTCCGGATGGACCTTTAGTCCCGGTTGATACACCAACCGGGACTAAAGCCCTACCTTTAGTCCCAGTCGGTTCCACAGACCGGGACTACAGCTTTTGTCCCGGTCCGTGGCACCGACCGGGACTATAGGACTGAGTTTAGTCTCGGTTGGTGTTACCAACCGGGATTAAAACCTCCCCTTATAAATTGAACATCCCTCT