| mature miRNA: TTTATTCTCAGTTTGTTGCTC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11930408|gb|BE320716.2|BE320716 NF034B08RT1F1061 Developing root Medicago truncatula cDNA clone NF034B08RT 5', mRNA sequence TTTATTCTCAGTTTGTTGCTC EST sequence (targeted fragment marked with yellow): AGAAAGTTTTTCTGATGAGATTGAAGATGCCTTAATTAGTAATGACAAAGGAAGTAGAATCATTGTGACCAGTAGAATGATGCATGTAGCTGAATATTTTAAGAAATCTTTTCTTGTTCATATTCACCACCTACAACCTTTGCCTCCAAACAAAGCGTGGGAACTGTTTTGCAACAAGGCATTTAGAGGGCAGTGTCCAGCAGAGCTTGAGGATATTTCCAATGATGTTGTTCAAAAATGTGGAGGGTTGCCAATGGCAATTGTGGCCACTGCAGGTCTTTTGTCAACAAAAGCTAAAACCGTGTTTGAATGGAAAAAGGCGAGTAAAAATCTGAGAATGGAGTTAGAGCGCAATGTGCATTTGACAAGTCTAATAAAGATTTTATCTCTAAGTTACGATGATTTGCCTAGCCATTTGAAATTCATGCATGCTGTATTTTGGGTATATATCCCGAGGACTACACCATCACTACGAAGAGACTTTACTCGGCAAT | |||||||||
gi|14984055|gb|BI309728.1|BI309728 EST531138 GPOD Medicago truncatula cDNA clone pGPOD-13N22 5' end, mRNA sequence TTTATTCTCAGTTTGTTGCTC EST sequence (targeted fragment marked with yellow): CAGACAAGATGTGTTTAGAAAAGATGAACTTCATAAAAATCATATTACAAGCATTAGCTAAACATTATCCATACAAATAATAATGCACATTCAAATAGCCCCGAGATATCTGCTATTTGCATTAGGCCAAATTCAAACACAATGGAGATTCACAAGAGGAGGTATTCAGTTACATAATCACTGAAGATTTCGGCAGGGGCGGAAGCTTCGAAACCATCGAGTTACCACCTCCGGCAGGTCAAGTGACAAATTAGAATTAAGATTTCGGCAATGACCACCAGGCGCAACATTAAATAAATGGCAATAGTTTAAGTAAACAGAGAACATTGAGACAACGAAGGAGCGCTGAAATAGCAGCTACGCGGGCAGAGAGAGAGGGCATATCCTGGAAATCTCTACACAATCCCGCATGTCGATGGGAAACAAATTCTATCACAGGTGTGGCGATTGGCAAAACAACGCTACAGCTACGGCTGAGCTAAATTCTGAGTGCTCCGTTTGCAGGGTCATGCCCCGAATTTGTGTCCTTGTGCTTCAGAGAAAGGTTAGCAAACTGAGAATCAAGGTCTCTGCTGTTTGTCCGTCTATGGCTGCCAAATGGTTGTTGTTGAGGCTGCTGTGCCTGCTGCAGATGCTGTTGGTACATGCCACGTAATCTTCCAATCTCTCTCTCCAGTACTTCCTGCTCCAGA | |||||||||
gi|157982050|gb|EX530322.1|EX530322 MTGland_A065_2007-06-28/MTGlandA065_F04_011_1 Medicago truncatula A17 glandular trichome Med TTTATTCTCAGTTTGTTGCTC EST sequence (targeted fragment marked with yellow): ACGGCCGGGGTCGTGATATACTCAAGCAAAAGAACGCAAATAAAATTTAAAATCACAACAAATACAAGGAATGTTATGAACAGCAAGCATCATGAAGAGATATTATGTTGCTCAAGCAAAGGAAATAAACATAAAAAAAGTACTCATCTTACTTTTATTAGAGAGCCGAGCTGAACAACGCCTAGTGGGACTACAGACACAACAACAATTGTCTAAAAGGCAAAGTAAAAGCTTTGTCAATGAAAAACTTCAGTGCGAACAAAGTATAGTGATGCAGACTAGGAAATTGTTTTCTATCGGCGAATTTCTAGGTTTCTTGCATAAAGTACACAAATGTGGAACGCAACATTATATTATTTCAATAAAGTTTGGTTGCAATTAGTGAAAAAAGAACAATGAACCGGAGTCTTGTAATGGCTTGGTTATTTGTCTTATTAAATCCTATTACCACATGAACCATACTTTTCCAAATATACCATCAACATTAAACTATCNATTATCATTATTATAAGTGTTGTAAACTGTAGATCGCGGAATTTAGCAGTTTGTTCCAATTCAACTACGCAGCAGTGCTATAGCCGCTATTTGACAACATGATGTACTAAATAGCATAACGCTGAACAATAGTGATTTGTTCAAATTCTGCTATGCATATAGCTACCATTTAACGACACTGCTTGGTATTACTATTGGTATTGTGAGGTGATTGTAATTTTCAGATAGACATAGAAAGTTCACTTCNNATTCTAATAAATCAGTAAGCATACCCTAATTCCAGCAGAAAANTGAGATTGCCACCCATCAACAAACTGAGAATCAAACGAAAAGGGGGAAGAATGAGAACGGNTGGAAGTTTANTTAGATAGTGACATGACCCAATACANTTCNAGATCTTCAAATTTTCTANGNNNGGGGANATATTAAATAACAAGANTTCTCNCNCNAAGANAAGCCANANTTGTAACTTGATTATNTCTGCANNGANCNCTGATGCNTTNCAGTA | |||||||||
gi|19110201|gb|BM780139.1|BM780139 EST590715 KV2 Medicago truncatula cDNA clone pKV2-54I11, mRNA sequence TTTATTCTCAGTTTGTTGCTC EST sequence (targeted fragment marked with yellow): GTTTACAAAAGATGAACTTCATAAAAATCATATTACAAGCATTAGCTAAACATTATCCATACAAATAATAATGCACATTCAAATAGCCCCGAGATATCTGCTATTTGCATTAGGCCAAATTCAAACACAATGGAGATTCACAAGAGGAGGTATTCAGTTACATAATCACTGAAGATTTCGGCAGGGGCGGAAGCTTCGAAACCATCGAGTTACCACCTCCGGCAGGTCAAGTGACAAATTAGAATTAAGATTTCGGCAATGACCACCAGGCGCAACATTAAATAAATGGCAATAGTTTAAGTAAACAGAGAACATTGAGACAACGAAGGAGCGCTGAAATAGCAGCTACGCGGGCAGAGAGAGAGGGCATATCCTGGAAATCTCTACACAATCCCGCATGTCGATGGGAAACAAATTCTATCACAGGTGTGGCGATTGGCAAAACAACGCTACAGCTACGGCTGAGCTAAATTCTGAGTGCTCCGTTTGCAGGGTCATGCCCCGAATTTGTGTCCTTGTGCTTCAGAGAAAGGTTAGCAAACTGAGAATCAAGGTCTCTGCTGTTTGTCCGTCTATGGCTG | |||||||||
gi|11608136|gb|BF519453.1|BF519453 EST456916 DSIL Medicago truncatula cDNA clone pDSIL-20P21, mRNA sequence TTTATTCTCAGTTTGTTGCTC EST sequence (targeted fragment marked with yellow): TACACTTGCATTGAAATAAATATACCACGTTAGTTAAGATTACACGGGGATGAATTTGAGATTACACATAAAACATAAAATTGTATTTGTTTACAACATTTGAAATATCATCAAATTTGAAATATCAACGAGAAACAGGAAGAACCTTATTAACAATATCCTGGCTAAGAGCAGCAATCTGAGAATCAAGAGCTTTAACAGTTTCTTCCTTTTGCTTTTCCAAATTCGCAAGCGCTTCTTGCAGTTCAGCATCAACCTTCTTCCTCCCTTCCGCAATCTTCTCTTCCACTTCAGCTTGAGTCTCTTTCTTCATCTGATTCAGCGCCACCGCAATTTCAGCACGCGCAGCTCTCAAAACTGCATTGGCTTGTTCTTCCAACTCCTTCACTTCTTCGGATGTGTTGGTGACGCTGTTGAGTTTGCCTCTGATCTCGGCGTCAC | |||||||||