| mature miRNA: TTTCACGGTTATGTTCGAAG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|23361641|gb|BU649461.1|BU649461 1112080D05.y1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TTTCACGGTTATGTTCGAAG EST sequence (targeted fragment marked with yellow): GCACGAGGCAGGGCCGGCTGCGCGACTACCTGGGCACCATGGTGGCGCACATGCCGCCCCCGCACCGCGCCTTCCTGGCCGCACTGGCGGCAGCCAACAACAACACCGGCACCGGCACCGGCAACCGCACCAACAGCGGCGCCAGCACAAACAGCAGCGGTGGTGCGGGGCGGGGGCAGGACGGTGGTGCGGGGCAGCCGGTGGCGGCGGCCAACGTGCGCGCCTACGTGCTGGCGGCGGCGGCGCGTGGCTCCGGTCACCCCCGTGGCGGGGAGCTGCGAGACGCCTACGACTGCACGGTGCGGGCATGGGCTGTCGTAGTGCGTTGCGATACTTGCGAACCTAGCCGTGAAATGTGGGGCTGTCGTAGCGTCTTGTGGACCTTACCGCACGTCCTTACCGTGAACTGTGGGTCTGAGGGCTGCGTGCTGAGCCAGCACCGGGTCCCAGGTGCCTGGTGAATTGCGGTAGGCGCTAGCAGCCGCCTCCAAATTTGCGTGACCGCTCTTGTATGTGCATGGATGTGCCTCACGTACGGCACAGCAGGTGGGGGAGCTGGACCGGTTTCGGAGCC | |||||||||
gi|12258191|gb|BF868047.1|BF868047 963096B10.y1 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo TTTCACGGTTATGTTCGAAG EST sequence (targeted fragment marked with yellow): TCCGTACCTAAAGGGAACAAAAGCTGGAGCTCCCCGCGGTGGCGGTCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGAGTCAACTACCAAATATCTACAGCATCACACGCTGCACATAGGCTTTCGGACTCGTTGGTTTGAGAAACTAAGCACCTCCACTTGCGCTGATCTTTCGTACACACAAACTACTTTATCTTGACTTCGGGACTGACATAAATATCAACGCTTGGTGGATGAGAGGAGGATTTGTCGCCTTTTTGTGTATTTCGTTTAATCAACTAAATTCGCTTGTTTCCCGGTTTTTATGTTGGCTCTGGTGGTGACTGTCGGGATTGTTGATAGTAGTGTCGACACCATCTCCCCCCTCCCCCACGCCCACGCGCATCCTTCATATATAATTGTGAAAGTTCTGTTTTTTTGTTCTTTTATTCTTCTTCATTCACTACGATCTGCCTTCCGTTGCTCTGTCTCGTGACGATGGTATTTGGGACGATGGAGTATGACTCACGGCACGCGTAACTAGCGTCGCGACGTTGCGTCCGTATGCCGGCCTACGTCCTGTCTAGGTCATAACATCATCTCTATACAGATCGAAATATAATACTAGAGTACGAAAAATCATCAACTTTTCCTACGTACTAAAGTAACCCTATCAGATAAAACATAGTCAAATGTTAGGCTCTCAGATGCCATATGTTAGGTATGTAGTCTGATTCGTTTATCTTTTTTTCATCTTTCCTTCCCCGGACAACACCTAGACCTTCTCCCTACACGCCACAAAGACGCCCGTATAGATATTAAGN | |||||||||
gi|12257923|gb|BF867779.1|BF867779 963093H09.y1 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo TTTCACGGTTATGTTCGAAG EST sequence (targeted fragment marked with yellow): ATGCATGNAGCGCCAAGACTACGAAATTAATCCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGCCACATTCAATAACAACGCAGTGGCACCCGGTCGTGCGGACGTCGTCTCCGTCATTGGCAGACCGTTGCTGCCACACCTGGATGTGCGCTCGCACAGCCTACAGCCGGAACGCGAGCTCAGCAGCAGAATGCCCCTAACAGCGTGACATCGCCAGTTGAGGAGATAGCGCAGGCCGAAGACTATGCCGCTGGAGCTGCAGCTGCCGCTGAAGTGTCTTTGTACATGGCCCTGACGCGCGGCAACAACCGCGCGGCGCTGCTGGTGCAGCTGCTACAGCGTGTGTCCATTCTCCCGGTGCTGGAGGAGGTCCCGCAAGCCAAGTCCAAACGCACGCGGACGTCAATGAAAAATGAAACTAGGCAAAAAGAAACTACAATACGAACGTAATCGTGAGACAGAGATAGACCGCGCGAGCCAGTCCGACACCAGATATTTACATTCTCCTCCCGTGTAGGATATAACAATACTCTACTCGTTGTATCGTGCGTCGCGCCTTCGCGACACAAGACTACTCACAACATACGTGCGTCTCGCGTGTCGGTCGTGTTGGCCGGTTCCTCCACAATATACTTCAATTGTTTACTAGCGTCATAACCGTCTTTTTTTAATCCGCCCTTTCCGCGCCTCCTCCTATTCAATCCTTCTAAAAC | |||||||||