| mature miRNA: TTTCGGTTCGGTTCGGTTTTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73894483|gb|DT497221.1|DT497221 WS01125.BR_N14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_N14 5', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): TCCCCGAACATTCACCCCTTAGCCGCCGCCCTCCCTTCCCCTCCCTTCTCTGCATATCTCATTCTCTCTCATTTTACTCTTTTTTTTCTCTCGTCCCTCTACTCTCTGTTCTGTTTTGATTTTTCTCCCTTTCCTCTACTATCTGCTCTGATTTGATCTTATGGATTTGGTTCCTTTGGGTTTTCTTCGGATCTTAGTTCTCCTATTGAGTCTGTGGTTGGCTCTACTAACAGCCAAATAGAGGACTATCAGATCCACCAAGAAAACCCCCTCCATTCTATATTCCGTCAAAAAATCTCATCTCTGACGTTAGTCTCCACCAACAGGACTGCTTGCTTACCAAAAGTTGCAGGCATCTCAAATAATTTGTCAAACGCATCTGAGATGACAAATGATGCAGCAGTAGGGTGTTTGGGGAGGGCAAAACAACATTTTGGGACTGGAGTATTGTTTTCTCAAAAGCCACATTAGACCTGGCCAGTGATCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGAACCGGTTTGAAAGGGAAAAAAACCGAACCGAACCGAACCGAAATTATTTGGTTTGAACTGGTTTTCGGTTCGGTTCGGTTCAAAAAATTAAAAAAATAATAATTCGGTGTGGTTGTTTATTTTGGTTCAAAACCGGACCGAACCGGAAATGCTCAGCACTAGTAAAACTTAAGGAGCTCCTTTGAGACAAAACTAGTTGAGGTTTACAAAACCTGGGACTGTGTGGGAGTGGTAGTCACAGACAAATATTATTGATTTGGACAAAAAAAAAAAAAAA | |||||||||
gi|73886570|gb|DT489308.1|DT489308 WS02538.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N21 3', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): ATTGAAATAAATTATGCATATACTGCATTCACCACCATTGTTAATGTGCTAGCATTTTTTTAAATGCAAAGACAAACATGCTTTAATAAGAAAATTCAATGCAACCTCAAATAAATTTTTTTTATCGTCACCCAATTTTTGTACAATATAAAAAAAGTCCCTTTAATTTATTTTCTCTTTACCGTATGAAAAAAAGTTACATAAGAGAAAAGAAAAAAAATTCAAGAGGAAAAAAAATAATAATTTGAAGTAAAGAAAAAAAAAATTTAAATTTTTTGAAAGCATTTTTGAAACGCAAAAATAAACATGCTTTAATAAGAAAGTTCAACCCAACCTCAAATGTAAAAAATTATCATCACCTAATTTTTGTAGAATATTAAAAAAACTCCCATCAATTTATTTCCTCTTTACTAGGGGTGAGCAAAAAAACCGAAAAACCGATTAAACCGAGAAAACCGGAAAACAAATAACCGAAAAAAAAAACCGATTAAAATTTTGAAAAAATCGGCCGGTTCGGTTTCGGTTTTATAAGCAAAAAAACCAAAAAAACCGAACCAAACCGAAACAAAACAAAACCAGAAAAAAAACCGAGCCAAACCAGAAAAACCAAGCCAAACCGAAAAAACCGAGCCAAACCGGTTTGAACCGGTTTCGGTTTTTTTTTTCAAAAAAAAATTTCGGTTTGGTTACTTTTTTTGATAAAAACCGAACCGAACCGAAAATGATCACCCCTACTCTTTACCATATGAAAAAAAAAATTCAATAAGAGAAAATAAATTAAAATTGATTTTTTTATATCATCACATCAAAATAATACAAAAACATTAAAAATATTAATTTGAATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73894483|gb|DT497221.1|DT497221 WS01125.BR_N14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_N14 5', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): TCCCCGAACATTCACCCCTTAGCCGCCGCCCTCCCTTCCCCTCCCTTCTCTGCATATCTCATTCTCTCTCATTTTACTCTTTTTTTTCTCTCGTCCCTCTACTCTCTGTTCTGTTTTGATTTTTCTCCCTTTCCTCTACTATCTGCTCTGATTTGATCTTATGGATTTGGTTCCTTTGGGTTTTCTTCGGATCTTAGTTCTCCTATTGAGTCTGTGGTTGGCTCTACTAACAGCCAAATAGAGGACTATCAGATCCACCAAGAAAACCCCCTCCATTCTATATTCCGTCAAAAAATCTCATCTCTGACGTTAGTCTCCACCAACAGGACTGCTTGCTTACCAAAAGTTGCAGGCATCTCAAATAATTTGTCAAACGCATCTGAGATGACAAATGATGCAGCAGTAGGGTGTTTGGGGAGGGCAAAACAACATTTTGGGACTGGAGTATTGTTTTCTCAAAAGCCACATTAGACCTGGCCAGTGATCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGAACCGGTTTGAAAGGGAAAAAAACCGAACCGAACCGAACCGAAATTATTTGGTTTGAACTGGTTTTCGGTTCGGTTCGGTTCAAAAAATTAAAAAAATAATAATTCGGTGTGGTTGTTTATTTTGGTTCAAAACCGGACCGAACCGGAAATGCTCAGCACTAGTAAAACTTAAGGAGCTCCTTTGAGACAAAACTAGTTGAGGTTTACAAAACCTGGGACTGTGTGGGAGTGGTAGTCACAGACAAATATTATTGATTTGGACAAAAAAAAAAAAAAA | |||||||||
gi|38585596|gb|CK101271.1|CK101271 F035P43.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F035P43 5', mRNA seque TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): AGACAGCACCGTGAAAGACCAACCGAACCAAAAGAAAGCCAAGAGACGATCAAAACTGTCGTATAGTGTGGTGGTCCTGTATTTTTTTTTCCTGCTCTGTAAGAGGACACACACAGAGAGAAGAAATGTCCGGAAGAGGAGGAAAGAGAGCAGCAGCAGCAAGGGAGGAGGAAGGAAGTGGGGCTGATGACAACTATGCTCAACGAACCACCGGGCAAGAAAACCACCAAGGGTGACAACTCATCCTCTGATAACTCTGATGAAATTGTTGTTTGTGAGATAGGGAGGAATAGGAGAGTGACAGTCAGGAACTGGAGAGGAAAGATTAA | |||||||||
gi|73886570|gb|DT489308.1|DT489308 WS02538.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N21 3', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): ATTGAAATAAATTATGCATATACTGCATTCACCACCATTGTTAATGTGCTAGCATTTTTTTAAATGCAAAGACAAACATGCTTTAATAAGAAAATTCAATGCAACCTCAAATAAATTTTTTTTATCGTCACCCAATTTTTGTACAATATAAAAAAAGTCCCTTTAATTTATTTTCTCTTTACCGTATGAAAAAAAGTTACATAAGAGAAAAGAAAAAAAATTCAAGAGGAAAAAAAATAATAATTTGAAGTAAAGAAAAAAAAAATTTAAATTTTTTGAAAGCATTTTTGAAACGCAAAAATAAACATGCTTTAATAAGAAAGTTCAACCCAACCTCAAATGTAAAAAATTATCATCACCTAATTTTTGTAGAATATTAAAAAAACTCCCATCAATTTATTTCCTCTTTACTAGGGGTGAGCAAAAAAACCGAAAAACCGATTAAACCGAGAAAACCGGAAAACAAATAACCGAAAAAAAAAACCGATTAAAATTTTGAAAAAATCGGCCGGTTCGGTTTCGGTTTTATAAGCAAAAAAACCAAAAAAACCGAACCAAACCGAAACAAAACAAAACCAGAAAAAAAACCGAGCCAAACCAGAAAAACCAAGCCAAACCGAAAAAACCGAGCCAAACCGGTTTGAACCGGTTTCGGTTTTTTTTTTCAAAAAAAAATTTCGGTTTGGTTACTTTTTTTGATAAAAACCGAACCGAACCGAAAATGATCACCCCTACTCTTTACCATATGAAAAAAAAAATTCAATAAGAGAAAATAAATTAAAATTGATTTTTTTATATCATCACATCAAAATAATACAAAAACATTAAAAATATTAATTTGAATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73883468|gb|DT486206.1|DT486206 WS02530.B21_F08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_F08 3', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): GAGACAGCACCGTGAAAGACCAACCGAACCAAAAGAAAGCCAAGAGACGATCAAAACTGTCGTTGTAGTGTGGTGGTCCTGTATTTTTTTTTCCTGCTCTGTAAGAGGCACACACACAGAGAGAAGAAATGTCCGGAAGAGGAGGAAAGATTAATGTCGATATTCGTGAGTTTTATCCCAAAGATGGCAACCTTCTCCCTGGCAAAAAAGGTATTACCTTATCATTGGATCAGTGGAACATGCTCCGTGATCATGTGGAAGAAATTGACAAGGCTCTTGGTCATTCTTAGGGCATCATAGGACATGAGTAGTTCTGTTGATTTTGCTAATGAATGGTAGTCTCAAGGATACTAGGATGTTTGGTCTTGGTCTTGGTCTTGGTTTCTAGAAAACTGGAATGGTGTAGGTGGGCATGCTTTCTTCTTTTGGATTTGGTAGGGGATGGTTGAATATCTTGTCTTGTGTATAAATGGTATCTTGGGAACCCCTAGCAATGCAGCACAATTACTGGCATAGTAATGTTAGTGCAAACAAACCTTTTGTTCAGAGGATTTGACCAGCAGGATGGTTTAATGGCTTAAACTTAAAGGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73894483|gb|DT497221.1|DT497221 WS01125.BR_N14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_N14 5', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): TCCCCGAACATTCACCCCTTAGCCGCCGCCCTCCCTTCCCCTCCCTTCTCTGCATATCTCATTCTCTCTCATTTTACTCTTTTTTTTCTCTCGTCCCTCTACTCTCTGTTCTGTTTTGATTTTTCTCCCTTTCCTCTACTATCTGCTCTGATTTGATCTTATGGATTTGGTTCCTTTGGGTTTTCTTCGGATCTTAGTTCTCCTATTGAGTCTGTGGTTGGCTCTACTAACAGCCAAATAGAGGACTATCAGATCCACCAAGAAAACCCCCTCCATTCTATATTCCGTCAAAAAATCTCATCTCTGACGTTAGTCTCCACCAACAGGACTGCTTGCTTACCAAAAGTTGCAGGCATCTCAAATAATTTGTCAAACGCATCTGAGATGACAAATGATGCAGCAGTAGGGTGTTTGGGGAGGGCAAAACAACATTTTGGGACTGGAGTATTGTTTTCTCAAAAGCCACATTAGACCTGGCCAGTGATCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGAACCGGTTTGAAAGGGAAAAAAACCGAACCGAACCGAACCGAAATTATTTGGTTTGAACTGGTTTTCGGTTCGGTTCGGTTCAAAAAATTAAAAAAATAATAATTCGGTGTGGTTGTTTATTTTGGTTCAAAACCGGACCGAACCGGAAATGCTCAGCACTAGTAAAACTTAAGGAGCTCCTTTGAGACAAAACTAGTTGAGGTTTACAAAACCTGGGACTGTGTGGGAGTGGTAGTCACAGACAAATATTATTGATTTGGACAAAAAAAAAAAAAAA | |||||||||
gi|73886570|gb|DT489308.1|DT489308 WS02538.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N21 3', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): ATTGAAATAAATTATGCATATACTGCATTCACCACCATTGTTAATGTGCTAGCATTTTTTTAAATGCAAAGACAAACATGCTTTAATAAGAAAATTCAATGCAACCTCAAATAAATTTTTTTTATCGTCACCCAATTTTTGTACAATATAAAAAAAGTCCCTTTAATTTATTTTCTCTTTACCGTATGAAAAAAAGTTACATAAGAGAAAAGAAAAAAAATTCAAGAGGAAAAAAAATAATAATTTGAAGTAAAGAAAAAAAAAATTTAAATTTTTTGAAAGCATTTTTGAAACGCAAAAATAAACATGCTTTAATAAGAAAGTTCAACCCAACCTCAAATGTAAAAAATTATCATCACCTAATTTTTGTAGAATATTAAAAAAACTCCCATCAATTTATTTCCTCTTTACTAGGGGTGAGCAAAAAAACCGAAAAACCGATTAAACCGAGAAAACCGGAAAACAAATAACCGAAAAAAAAAACCGATTAAAATTTTGAAAAAATCGGCCGGTTCGGTTTCGGTTTTATAAGCAAAAAAACCAAAAAAACCGAACCAAACCGAAACAAAACAAAACCAGAAAAAAAACCGAGCCAAACCAGAAAAACCAAGCCAAACCGAAAAAACCGAGCCAAACCGGTTTGAACCGGTTTCGGTTTTTTTTTTCAAAAAAAAATTTCGGTTTGGTTACTTTTTTTGATAAAAACCGAACCGAACCGAAAATGATCACCCCTACTCTTTACCATATGAAAAAAAAAATTCAATAAGAGAAAATAAATTAAAATTGATTTTTTTATATCATCACATCAAAATAATACAAAAACATTAAAAATATTAATTTGAATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73880525|gb|DT483263.1|DT483263 WS02522.B21_B20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B20 3', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): GCTAATCTTCCAATCTTCATTCTTCAATTTCCACTCAAGATCTAGCATCCCAGGCTTCCCAGCAACACCCCCCCCCCCCCATTTTTCAATCTTCATTCTTCAATTTCCACACTAGATCTAGCATCCTAGGCTTCCCAACAACACCTAAAAGCCTTAGCACCAGCCAGCTCTTCTGATTTATTTACATTCCAGGAAATTCATACGTTCCGTGGACAGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCCATTCTAATCCATTCAGCCTTGTCATGGCTGGTCACAGTTAGGATTCAAAAAGGTGGGTAGAGATAAAGGCGTGTCAAGCAAGTGAAGTGAGCCGAGGAAAGGCAGTGAAGGTTCGACTTTGTTCGGGTGGGTGAAAGCCCTAGGTTGCGTAAAGAAAGGATAATAGAGCAATCCATCTAAGCACTTTTTTTCAGTCCAGAAAGCCAAAAAAACAATATAGATTTTTTTTTGACATAAAAAACCGAACCGAACCAAAACTAATCGGTTGGAACCGGTTTCGGTTCGGTTTTGATTGTTTTTTTTATTTCGATGTTGGTTATTTTTATTTGTAAAAATCAAATCGAATAAAAATATCACCCCTAAACCGTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52386411|gb|CV231668.1|CV231668 WS0195.B21_D15 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0195_D15 3', mRNA sequence TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): GGTTGGGCTGGAAGTGATTCTCTGTCTATTTCTGTCTGTTTCTTCATAAGCCAGAAACAGGAAAGAAGGCTAATTACAAATTACAGTTTGCTTTTTAAAGAAGGCTAAGCCAGTCTAAAAAAAACCAAAAAAAAAAAAACCAACTTCTAAACCGGATTTCCCCCCGGTTTTTTCCTTAAAAAACCAGATTTAACCAGACCGGACCAGTTCGGTTTGAACCGGTTTCCGGTCCGGTTTGAACCGGTTTCCGGTCCGGTTTGAACCGGTTTCCGGTCTAGTTCGGTTAATTTTTAACAAGAATATTGTAATTCGGTTCGGTTGGTTTTTTGGATCTAAACTGAACCGAACCGAACTGTGAACACCCCTACTCCAGGCCGAGCTAATAATCAGATGGACGTTCCTGTGCTGTGGCATTTGGATCGAGTCGCCACTGCGGTTTCTGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|60711377|gb|DN501187.1|DN501187 UM69TG06.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM69TG06 5', TTTCGGTTCGGTTCGGTTTTT EST sequence (targeted fragment marked with yellow): CACATCTTCCTTCTCTTTATCTACTCTTTTCCACACCATTCCTTGTTGAACCCCATTTTCTTGATTTCCTTTCATCATGGAGGATGCTAGTGTAGCCAAAGACCGAACTATTTCTGTGGCATCTGCCTTTTCTGCTCATCAACAGGCTGTTCAGGACAGGGACCATAAATTCCTAACTAGAGCAGTTGAAGAAGCTTATAAAGGCGTTGAATGCGGAGACGGAGGCCCATTTGGTGCTGTCGTCGTTCAAAATGATGAAATAATCATGAGCTGTCACAATATGGTTTTGAAGAACACCGATCCCACAGCACATGCAGAAGTTACAGCTGTGAGAGAGGCGTGTAAGAAGCTGAACCGAATCGAGCTCTCGGATTGCGAAATATACGCATCCTGCGAGCCATGTCCGATGTGCTTTGGTGCCATCCATCTTTCAAGAGTCAAGAGGTTGGTTTATGGAGCTGAAGCTGAAGCAGCCATTGCAATTGGGTTTGATGATTTCATTGCTGATGCACTAAGAGGCACTGGGTTCTATCAGAAGGCTCACTTGGAGATCAAAAAAGCTGATGGTAGCGGTGCTGTCATCGCAGAGCAAGTATTCGAAAAGAC | |||||||||