| mature miRNA: TTTGACCAACAATTCGACTAA species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270409758|gb|GT791765.1|GT791765 CCXG5464.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG54 TTTGACCAACAATTCGACTAA EST sequence (targeted fragment marked with yellow): GACTTCCATGAGCTATTAGATATACCTCAAGGGGATCGGAGAAAATACCATGATGATGTCACTGTCATGGTAGTTTCTCTAGAAGGGAGAATCTGGAAATCATCTGGAACTTATGTGTGATGTTCAGCGGAAACAATGTCAGCATCGATGTTTTTGCTGTGACCTCCTCGGCTGGTCAGCACCTCTGAGCAATTGCATACGTGCTCATCAAGAGAAACATCCGCACTTCACAGCATGGCAGACAAATGGTTTGCTCCATAAATTCTCAAAGCTGTATTTTCCAATCAGAGACCATCACTGGTCCCAGATCTCAGCTTCAGCGCAAAATGCAGCCCATCAATGTGCCAATGAGTCAACTCTGAGCAGCAGACTAATATGCAGAGAAATGACAGAAAAACGAGAGGAATCCCTCGGCAAAGCGGAGTTGAAATTCGCTTTGTCCCGCCAGCGTTAATTGGTCAAGTACTGACCTGTGACAATTTTACCCACCTAGCTGTGCTGTTGTACAAGATTTCCTTCTTTCATCCTTGAGGAAGAAAGATGACCTTTGTGGGCATGCAATTTTTCCCGTACATGTAGGAGATAGCCCGTACTATGCTGGAATTGTTGGTCAAAAGAAAATGATCATTCGCCCCTCATTTTGTGCCTTATTTTGTCTTCTCGCA | |||||||||
gi|270426588|gb|GT810694.1|GT810694 CCXG16291.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TTTGACCAACAATTCGACTAA EST sequence (targeted fragment marked with yellow): CACCATGCGGGATTAATTCTGTGTGCCTCTATGGTGGAACTTCAAAAGGACCCCAAATATCTGCCCTCAAATCTGGAGTTGAAATAGTCATAGGGACACCTGGTCGTATGAAAGACCTCATTGAAATGGGTGTTTGCCGTCTTAATGAGGTTTCTTTTGTGGTTCTAGATGAAGCTGATCGGATGCTAGATATGGGTTTTGAACCTGAAGTCAGGGCAATATTAAGCCAAACATCGTCGATACGTCAGATGGTTATGTTCAGTGCAACATGGCCCTTTGCTGTCCACCAGCTAGCCCAAGAGTTTATGGATCCAAACCCAATAAAGGTTGTCGCTGGATCGGAAGATCTTGCAGCTAACCATGATGTGATGCAAATTGTTGAAGTATTGGATGATAGAGCACGAGATTCAAGATTAGTTGCTTTGTTGGACAAACATCATCGAGCGCAGAGCAACAGGGTTTTAGTTTTTGTGTTGTACAAGAAAGAAGCTGGACGAGTAGAAGCAATGCTTAATAAAAGGGGGTGGAAAGCCGTTTCTGTTCATGGAGACAAGGCGCAGCATGATAGAACAAAAGCTTTATCTTTATTTAAAGAAAGGAAAATGCCCTTTAATGATTGCTACGGATGTGGCTTCACGCGGACTTGATATTCCTGATGTTGAAGTTGTCATTAATTACAGCTTTCCTTTGACCACTGAGGATTACGTTCACAGGATTGGAAAGGACAGGTCGTGCAGGCAAGAAAGGTGTTGCACATACATTTCTTCACTCAAGCAGAT | |||||||||
gi|78005567|gb|DV473955.1|DV473955 5466_E01_J02ZE5_007 Brachypodium distachyon developing spike EST library Brachypodium distach TTTGACCAACAATTCGACTAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTCACTCCTTGCAAATATACAAGTCCAACATGGAGTTTTATGCCAAGATTTGACCAAAAATTACACTAGTAAGATGAGTTTATTTGTGACACAAAAGTGATATCATTGGATTCTTTCTGAATTTTTTTTCTCATGGTATAACTATTATATACGCCAAATATTATTGGTCTAATTGTTGGTCGAAGTTTGGCATAAGATTCTGTGTTGCCCTTATATATCTGGAAGGAGGGGAGTAGTGACTACTGACTAGCGAGGTAATGATTCAGGAGTACAATAGTTTTATCATCTCTTCCTTCTCATGTTGTACAGAGGATTGCAGATGTTCAGTTACCAGCAGTTACTCACAGGGTGTACCTGGATGTAGAAATTGATGGCCAAAATATAGGTAGAATTGTTATTGGTCTTTATGGGGAAGTTGTGCCAAAAACAGTTGGTATTTACACACCCTCTTTCTCTCTTCTCCTCATGCTTATATTTTTAATTGAATGCTTATATCTCTATTCTCTTTGGGGATAATGACATAGCCAAAGATTGCATGATTATCCTGTCATGTTAAATCTTCCGTAGAAGAAGTTATATGTACTTTAGCCGTGCACCCCTTTTTGGACACTACAAAATAGAGAAAACTGGAAATTGATTGGATATTCAGTAGATTAGTGGAGGAAGACTGTTGCATGCCTATGCCGCCTCCAATATTGTAAGCCTGTTTGCAATACTGCTGTGAAAAATTT | |||||||||
gi|78018001|gb|DV486388.1|DV486388 5502_B08_C16RZ_062 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TTTGACCAACAATTCGACTAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAATAAGTTTATTTCTAATTCATGTTCTGAGTCAAATATTTTAAAGTTTGACCAACTTTGTGGGAAAAGGCAACAACATTTACGGCACCAATTTAGTATCACTAGATCCGTCTTGAAATATAGTTTCATATTATACTGATTTGATGTTATACACTCCCTCCGTTCCATAATATAAGGCACGCACGCATTTCAAAATTTTGGTTTGACCACCAATTAGACCAACAAAATATGAATTATGTATTATAAAAATTATACCATCCGAAACTTCTTTTAATATGAATCTACTGGTATAATTTGTATACCACATAATTCACATTTTTTTAGTCTAATTGGTGGTCAAAGTTGGATCTCGAAATGCGTGGACACCTTATATCATGGAACGGAGGGAGTATATTGCTATTCTTTTCAATATAATTAGTCAAAGTTCAAATCTTTTGACAGGGACAAGAGTTAGAAGTACTCTTATTTGAGGACGGATTGAGTAGCATCCAAATAGCACAACGATGCTACATCCTCCTGATTTCCATGATTCCT | |||||||||