| mature miRNA: TTTGACCAAGTTTGTAGAACA species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270418929|gb|GT800992.1|GT800992 CCXG10778.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): TCTCAAACTTACATCAGCGACGGTGAAGATGATGCTGGCAATGAATCCAATGAATATCTCCGAATTGGTTCAGTTTTAACCGATGAAACTCCAGTCCAGTGCTCTCTCCGGTATATGACTGCGTGTTCAGAACAAGGCAAAGCCCAATAAGTGCCCATGTGGTTCCAAAATCTGGACTACTACAGTACAGTAATAGCATGTACTTCCTCCATTCTTAAATATAAGATGTCCTATCTTTGTCGTAAGTCAACCAAGTTATAAAAAAATTCTATCAATGTCTACAACTCTAAATTGGTTTTATTGAAGCCGTCATGACATATATCTTCATAGTACACTCATTTGATATTGTAGATATTAATACGGTTTTCATAAACTTGGTCAAACTTTAAGAAGTTCGATTTAGGAAAAAGCTGGAACATCTTGTATTTAGGAACGGAGGTGGTAGCTCTCTACTGAAGATGTTGTCGATATTTTATTCATATGTGTTCAGTCTTCTTACAAACAGGCGGACATATGACAAAGTTGATGATACACGGATTTGCAAAACTGACAAGTCTGTGACCAGCAGCATCATTTGCATCTAGTTCGATCACCTCCATGCACTTGCCATATTCTACAGATTGAACAAGGTTTGTTCTGAGAAGAAGCTTGCAAGTGCAAATGTAAACCAGGGTTCTGTACGTTCCTTTTGCAGCAGCTGTAAATTACTGTATGTCGCGTCTGTGATCT | |||||||||
gi|270471149|gb|GT850959.1|GT850959 CCYP8208.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): CTAATTTACAGTGAGCATATGCTTTTGCTGTAAAATGTTAACTAGCCCGGAGATGAATTATTACTATACTACTCCCTCCTTTCCTAAATGTAAGAAGTCCTAGTTTTGTCCAAAGTCAAGCTTTTTAAACTTTGATCAAATTTATAAAAAAATCTACTAACATCTACGACTTCAATTAGTTTTATTACATCCATCATGATATATATTTTCATAATATATTTATTAAGATATTCTATATGTTCATACATTTTTTTATAAACTTGATCAAACTTTAAGAAGTTTGACTTAGGACAAAGCTTGGACTTCTTAGTTCTTACATTTATAAACGGAGGGAGTATTGGAGAGGAGAGAAAAAAAAACTAAACGAGTGATAGCCTTCTATTAGACCCGAATTGGATGATCAGTTTGTAGTATCTCTTACATTCAATTTGTAGGAGCACAGCGGGCTTTCCAGCAATTGATGCCATGATGCCCGTCGGATGCGAGTGGATGCCATCTGGGACTCGTGCTATGATGCATCTTTTCATGTATAAACCGTTTTTGTGGAACATGCGTACACGGTACACCCTCCATGGTAACCAGCTCCCTCTCCTCTCTCTCTGAAGTAACAACTGTATGCCAAGTCAAAATGATTGTATAACGGATTGACCGAGGGATTAAGTACATGCTACTTCTGTAGTTCTGTTATGTTCATCTCATTTCAAACGATGTTGCTCTGAGTGATATGTATGGGCCCAGGTTGACAATT | |||||||||
gi|270461912|gb|GT845653.1|GT845653 CCYP5298.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): GTGGTGATTGTGATGATCCTAAATCGAGAACTGCCACATGTACAGTACAGAGCACATACATGGTTTCTTTCGTACATACTTCATGTGCAAAACTGCAAATACAATAAGTTGATGGTGTAATCAGGTTTTGCTTAGTTAGAGAAGAGAAAATAAGTGGGCTGTAAAGTAGTGGCTGACATGTCAGGGGATCCTCCTCCCCGTTTCTAGATGCAAAAAATCCTAACTTTGTTCTAGGTCGAACTTGGTATCTACAAATGTCAATTAAGTATATTATAAAAAAATATTATGATGAATTAATAAAACTAATTTAGAGTAATAGATGTTGGTAGATTTTTTTATAAACTTGATCAAAGTTTAAAAGTTTGAGTATATCATGTGCAAATACAAAGTTAGTTCTTTTGGCACCCAAGAACAGAGGGAGTACATAGAAATAGGAAATATTGGAGGATTTGATGGAATATTTTGAAAGTTCAGTAACCATTGCCCATTGGTCAGTAACGTCTGGGTCAGCAACCGCTCGGTCAGTAACCACTTTTCAAGTGACGCGTCGGTCAGTACTCAGTAGCCCTCAAACCTCATGGAACTGCATTTGTGGGTCATTGTACTGGTAGAAGTCCAACCTCATGGAACTGAATTTGTTACCTGTAATCAAAGGTACATTTGGCAATGAAAGAGTTTGTGTAGGAAC | |||||||||
gi|270444287|gb|GT827029.1|GT827029 CCYO10041.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): CTCATGTAGCCCCACTGAAACTTGTTTTGGTACATGGGTCAGCAGAAGCTACTGAACATTTAAAAATGCATTGTGCAAAGAACTCAGACTTGCATGTTTATGCTCCTCAGATAGAAGAAACAATTGATGTAACTTCAGACTTATGTGCTTACAAGGTGCAACTTTCAGAGAAGTTAATGAGCAATGTCATTTCTAAGAAGTTGGGCGAGCATGAAATTGCGTGGGTTGATGCAGAAGTTGGAAAAGTGGATGAGAAGCTTAATCTGCTACCCCCCTCGTCAACTCCATCTGCCCACAAATCAGTTCTTGTTGGTGATCTGAAATTGGCCGATTTCAAGCAATTCCTAGCAAATAAAGGTCTACAGGTTGAGTTTGCTGGGGGTGCTCTACGGTGCGGCGAGTACATCACAGTGCGCAAGATTGGTGATTCTAACCAGAAGGGCAGCACGGGTTCGCAGCAGATTGTGATCGAAGGTCCGCTGTGCGAGGACTACTACAAGATCCGTGAGCTCCTTTACTCCCAGTTCTTCTTGTTGTAAGGCCTGTCGCATTCGGAGCGGCACCATTGCTGCCGTGTGCTGTGTAAAACCGACAGAAGAGGATACTGCTTGTATTAATCAATTACTGATCCTGGGAATCCCTGTTGTACAATTCTCACATATTTGTCTCCCGAAAGTTCAGGTTACTGCTCACTGATCCTGTAGTTGGTTGTTTTCATGTTTTTTTTAAGTTTTTCGTGTAAATGTGGACTTTATTAGTTTTATGAACTTGGTAAAACAAGGGGAAAAAGCGCTGAGGGCTT | |||||||||
gi|78015003|gb|DV483391.1|DV483391 5384_F05_K10Z_037 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGATCTTCTACTTATTTATTTAGAGTCTTGGCTTTGTTTTTGTTCTTTTGCTTTCTTTCAGCTTATCCATATTTTGTCTTTTGTAACTTTCGCCTTCTGGGCGCTTCTTCAAATGAAAATAGCAGTTATACGTGCGGGTTCAAGGAATTTTATTTATTTATGTTAAGACAGTATCTAGATGAGTGTGTTTGAGAGGGAGTAGTAGTTATATGTGTATCTTGCAGTTTGGATGTTTTGGAGTTACGATAGAATTTACTTGTCCAGTGATGACATAAAGTTTATACCATATATGCCAACCCAACCCCATATTTGGTAAATGTTCATCCTACTCCTGTCATCCCTCTAAAATATAAATGCTCACAAAATGGCACTCATGTTAACCATATTTAATCATTCTGTTGATATAATTAGATTCTCTACGTTTTTCCTGTTGATTACCGGTGGGTGAAATGATATATCCGGGTGTATTAACTGTAGAATCTTCTTGTTTATTACTCCTTCCGTTCCTAAATATAAGAAGTCCTACTCTTGTCATAAGTCAAACTTCTTCATGTTTGACCAAGTTTATAGAAAAATCTACTAAGAATATCAAATGAGCGTGCTATGAAAATATATATAATAACAAATTTAATAAAACTAATTTGGACTTGTAGATTTTTCTAAAAACTTGGTCAGACTTGAAGAAGTTTGACTT | |||||||||
gi|270476700|gb|GT862524.1|GT862524 CCYP15001.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): ACCGCAAACACCTTCAAGATATATATCATGACGGATTTAATAAACTATTTTAGAGTTGTAGATGTTGGTTGATTTTTCTATGAACTTGGTCAAATTTTAAGAAATTTGACTTTAAGACGAAGCTAGAACATCTTATAATTTGGAACAGAGGGAGTGCATACATAATCTTTGTTTCCAAAAACTAGTGTCGTATATCTTGTCAGAGGTCCTATCGAGCTTTATGATGGTGTCTTTGTTTTTATTTAGGTCTTTGATTGCTGACTGGATCGATGAATTCGAGACCAGTAGTGCTCATCTTCCTCCTGCTCGTGCTCATCGTAACATCACAGTTTGAGTGGAAGCAGCAGATTGGTGAGGCCGAGGCGACCCCAGCTGCTGCGACACGACGGAGGCAACAAGCGCTGGTCGTAAGGGAAGATGCTATCAATGAGAAAATAATATTGGCGCAAGAGAAAAACATCCAGCAGCTCACCGAGCTTATCCAGAGCCTCCAGGTGCAGCTACTGCACTGCCGCGGCAGTAACAGTACTACTGCTCATAGCGCCTCCTCGAATCAGTCGTTGACCAAGGACAGCAAAGTGGAGGGACCGGACATGATGGATGATGATCATATGAATCGTCACCTGAATGATCGTCATCGTCAC | |||||||||
gi|270394703|gb|GT779948.1|GT779948 CCXF14185.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy TTTGACCAAGTTTGTAGAACA EST sequence (targeted fragment marked with yellow): ATGTCTGCTGAGAATCTACCCCAACAACTTCTGGGGTGTAAAAGGTGGAGACCATAGGCCCTAGAGATACAACAAAATTTGGGCCGGCTCACGCAACGGCTTGAGTGGAGCGCTGCAGAAAAAAAGGCCTATGACTGAGAAGCTGGGAAATAGATGCTTCTCCAAGCATCTGACACTCCAAACTTCACTTTTGTTTCCTACATTTCTAGGTATAAGATGTTCTAGGTCTGTCCTGTGTCAAACTCTTCAAATATTGACCGAATTTATAGAAAAGTTTACTAACATTTACAACTTCAAATTAGTTTTATCAAAACAAGCATGGCATATATATTTTCATAGCATACTTATTAATATATTCCCTCCGTTTCATAATTCTTGTCGAAATATTACATGTACCTAGACGCTTTTTAGGAATAGATATATCCATATTTGGGCAAATTTTAGACAAGAATTATAGTACGGAGGAAGTACATATTAATATTAATACATTTTCTATAAACGTGGTCAAAATTTAAAACGTTTGACTTAGGTCAAACCTAGAAGTCAGTGTTGAAGAGCTGTCGAAGCTTGTGATTTGCCATCAACCAGTTTGTAAAGGCTCTGATATCGCCTCAAAATCTACCACGAGTAACTAGGCGAGACTTTGGTCTTAATTTAGGAGGATTGGGTGGACTTGTGTGTCTGTGAGTTTTGTGTGACTCAACCCTCTCAATGAAGACGTAGGATCGTGCCAACGATCTGAACTTCGGG | |||||||||