miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTGAGAGAGATAACACAGAC
species: Raphanus sativus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|158944337|gb|EX907298.1|EX907298 RS3BT33JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|.|||.|||||.|| |||.||
AGACTTTCTCTGTTTTGTTTG

EST sequence (targeted fragment marked with yellow):
TGATGATCTCCTCCAGGACCATCCTTCTTCTTCATCTTCAGACTGATCGAACAGTGGTGAGTTATCTTATGGTTACTATATGAAGCTTTTTTAATATGCATTTGTGTCTTGTGATTAGATGAATTGCCATCGATATATGCTTTGAGTATTTTAGGTTGGTTGAGGTGGTGTGAATGATTAGTGTTTGCACTTTTGTTCTACTTGATGGTCTAATCTCTGTAGATATATTTGGTGGTTGGGCTTAGCCATTGTGTAGTGGCGTGGAGTGTTGTGTATTGTTCATGTGAGGAGTTTGTACATCTCTCCTTAGCATATGTGCGTGGAATCTGCAGTCTTTCTTCATACATATATAAGTTTCAGCTTTATTTACATTTTTTCAAAGCATGACTAGCTGTTGTTTGCAAGAGGACCTCAATTTTGATCCGTTTGTTTTGTCTCTTTCAGAACGAAGACGTCTTATGGTACTGTCTTGAAGGATGCGTATGTCTCCCTTTGTTTCTTTTTTTTTGTTCTTCAGGTGCCTGGAAGCTTGGTACAAACTCAAATAATAACACTCTTGAAGACTTGTTTTCAAATGAGAGAGTACTCATTGTTTCTTAGTAAAGCTGTTTTGATTCTCTACTTGCATCTTTGTTATGAATATACTTTCTGAAATGTGATAATTTTTTTCTAATGTTCTCAAAAAAAAAAAAAAAAAAAAAA



gi|158943312|gb|EX905598.1|EX905598 RS3CM37TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
TTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAGGCAGATCAAAGCTATGTTCTTTATCTTAACAATGATTATGGCTTTGGTTTGTCATCATCAATCAGAAGCTATACCATATATTGGTCGACTGAAATGCATTGTATCACTAAGGAGCGTTGAGGGTTGTCTGGAGGCCATAGAGAAAGCTACAAAGGGAGACAATCATGGTTTGGATAAGGAATGCTGCGACGCTATTCGTGGCCTCGCCAATGACTGTTTGCCGATTATCTTCTCCGGAGGACCCGCCATTGGCTTAGTCGTTCAAGCTGCTTGTTCCCGTATACTAGATGACGTTAATTAATTATAGAACATAATTATAATTAAAAAAAAGAGCTGTGTCACTATACAATTATTTTTCTTTCCTAACCGAAGAGATATGAATCAAAAAGTAGTAATAATATCTAAAATTGTATCAAACTAAAAAAAATTTGTATTGTCAGCTAGAATTTTATACCAAATAACCATAAACATCAAAAAGTTATTAACTGGTTGAAACAATCAAAAAGTTATCTAATTGGCTCCGGGCCATGAGAAAGATTAGGGCACAAAGTTCAAACTCCTCATAGTTAACAAAAAAAAAAAA



gi|166129169|gb|FD563539.1|FD563539 RS1FC22TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
TTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAAACAGATCAAAGCTATGTTCTTTATCTTAACAATGATTATGGCTTTGGTTTGTCATCATCAATCAGAAGCTATGCCATATATTGGTCGACTGAAATGCATTGTATCACTAAGGAGCGTTGAGGGTTGTATGGAGGCCATAGAGAAAGCTACAAAGGGAGACAATCATGGTTTGGATAAGGAATGCTGCGACGCCATTCGTGGCCTCGCCAATGACTGTTTGCCGATCATCTTCTCCGGAGGACCCGCCATTGGCTTAGTCGTTCAAGCTGCTTGTTCCCGTATATTAGATGACGTTAATTAATTATAGAACATAATTATAATTAAAAAAAGAGCTGGGTCACTATACAATTGTATCATGCATGGTTTTTTTTTTAAAAGGGGAAAAGGGAGACAGATATACAAACGTCAATAAACTGCTATATAATTTTCTAGAACTGTATGTATTATATAATTATTTTTCTTTCCTGACCGAAAAAAAAAAAAAA



gi|161554581|gb|EY926555.1|EY926555 RS1D951JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
TCCCCAAGATTGCAGCAGCTCAAGGGCTCTACGCCATGGTGCTACCTGGATTCTGGATGGACATTGGACAACCCAAGGACTACATAACGGGCCTGAGACTCTACTTAGACTCTCTCAGGAAGAAGTCTCCAGCCAAGCTAACCACCGGTGCACACATTGTTGGGAACGTTCTGGTGGATGAAACCGCTAAGATTGGAGAAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCGGGCTGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTCATGCGTGGGGCAAGGATCAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTATGTGGGATCTTCTTTTTTGTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGTATATCTTATCTTGTTTAGTCATTTGGTGTGTGTCTCTATTTTTTGTAACTTATCAAAACATTTCTCAATTGAATATTATTCTTTTTTTCCTAAAAAAAAAAAAAAAAA



gi|166135282|gb|FD567153.1|FD567153 RS1FC22JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
TTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAAACAGATCAAAGCTATGTTCTTTATTTTAACAATGATTATGGCTTTGGTTTGTCATCATCAATCAGAAGCTATGCCATATATTGGTCGACTGAAATGCATTGTATCACTAAGGAGCGTTGAGGGTTGTATGGAGGCCATAGAGAAAGCTACAAAGGGAGACAATCATGGTTTGGATAAGGAATGCTGCGACGCCATTCGTGGCCTCGCCAATGACTGTTTGCCGATCATCTTCTCCGGAGGACCCGCCATTGGCTTAGTCGTTCAAGCTGCTTGTTCCCGTATATTAGATGACGTTAATTAATTATAGAACATAATTATAATTAAAAAAAGAGCTGGGTCACTATACAATTGTATCATGCATGGTTTTTTTTTTAAAAGGGGAAAAGGGAGACAGATATACAAACGTCAATAAACTGCTATATAATTTTCTAGAACTGTATGTATTATATAATTATTTTTCTTTCCTGACCGAAAAAAAAAAAAAA



gi|158918668|gb|EX891234.1|EX891234 RS1BO13JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||.|| ||| ||
AAACTCTCTCTGTT-TGTGTG

EST sequence (targeted fragment marked with yellow):
GGATAAGATAGAAGTTGGAGAGATGCTGCAAGTGGCTTTACTCTGCACTCAGTTCCTTCCAGCGCACAGACCGAAAATGTCTGAAGTGGTTCAGATGCTTGAAGGAGATGGATTAGCTGAGAGATGGGCTGCTTCACATAACCATTCACATTTCTACCACGCCAACATGTCTTACAGGAGTATTACCTCTACTGATGCTAATGGAGACAACCAAACCAAACATCTGTTTGGATCCTCAGGGTTTGATGATGAAGATGATAATCATGCATTAGATTCTTTTGCCATGGAACTATCTGGTCCAAGGTAGGGAAAGAAAGAAAGATCATATCCCCCATGAGTTCAATTTTTTTTTGGAGATGATATAGACATGTAAATTGTATGGAAGTTTGAGATTATGGGGTCTAATGTTTACTATTTTGGATGTATATATTATTTATTTTGGAAGGTGTTTTTCTCTGTGTGTTTGTCTCTCTCAAAATCATTAAGACTTTATTTTGAGAATGTTTGTTATCAGTCACACATGTCTTTGAAGCAAAAAAAAAAAAAAAAAAA



gi|161564099|gb|EY935312.1|EY935312 RS2DU30JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.||||||| ||||||.||
GAATTCTCTCT-TTGTGTTTG

EST sequence (targeted fragment marked with yellow):
GTCGCTTGCATTGAATGATCGTTTGGGTTACTTTATCTCCAGTACTTTGACAGATCACCTCTTATACCAGAGTTCCTCTAATGGATAAGATCAATGAGTTGGCTCAAAGGTATCCGGGATTGATGTCGTTGAGAAGCGTTGATCTTTCTCCAGCGAGCTGGATGTCTGTTGCTTGGTACCCTATTTATCATATACCAATGGGGAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTACCACACTCTTTCTTCTTCTTTTCAAGATATGGAGCCGGAAGAGAATGGAGGGGAGAAAAAGAGGATGAGGAAGGAAGGGGAAGACATTAGTCTGGCCCCATTTGGGATGGCTACTTACAAGATGCAAGGCGATGCTTGGCTTTCCCATAACCACGATGGCCAAGAGAGACTTGCTTCGCTTTTCAGCGTTGCGGATTCGTGGCTGAAACAGCTTAGGGTTCAACATCATGACTTCAACTACTTCTGCACCATGTCAATGACTCCTCGTGGTGGCTAAAAACCATGTTTGTGTTTCTCTCTTAAGTTCCCATCCTTCCTTTTGTTTATGGAACCGCTGGCGTTTTCTAAAAAAGAGTGATCTGGCTTTTGTTAGCGTTTTGGGTTAGGATATAGCGTTTTAAGAAGATACCTAACCTTTTGAGAAAAAAAAGTATATGTCAGTATATAGAGAGTTTGTTGTCTTGTTGAAACAGAGTAATCGTTGTTACTTGCGTGTTTGAAACAGAGTAAATGCTTTCTTGTAAGTTTATATATCACTGTTGAGAGAGGAACATAACTTTTTGTGCCTCAGCACCGTTACTGAAGTAATAATCATTTTAACCAAAAAAAAAAAAA



gi|156164530|gb|EW724676.1|EW724676 RS2AQ76TFB RS2(RS) Raphanus sativus cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
.|.||.||||||||| ||||
GAGCTTTCTCTATTGCCTCTG

EST sequence (targeted fragment marked with yellow):
GGACTTGGCCGCGGCGTCTCCGTTATCTCTTTCGAGTCCAGCTTTCCCGTCCGTCGGAGATTTCTTTCTCGCAACCGGAATCCGAAAATGCAGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTAGTCCTCAACATCTCAGTCGGTGAGAGTGGAGATCGTCTCACCAGAGCCTCTAAGGTGTTGGAACAGTTGAGTGGCCAGACTCCTGTTTTCTCCAAGGCACGATACACTGTTCGTTCTTTCGGTATCAGACGTAACGAGAAGATTGCTTGCTACGTGACCGTCAGGGGAGACAAGGCAATGCAACTCCTCGAAAGTGGACTCAAAGTTAAAGAGTATGAACTCTTGAGAAGGAACTTTAGCGACACTGGCTGCTTCGGTTTCGGTATTCAGGAGCACATTGATTTGGGTATCAAGTATGACCCGTCGACCGGAATCTACGGTATGGATTTCTATGTTGTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGGTGCAAGGCTCGTGTTGGAATCCAGCACAGAGTCACCAAAGATGATGCCATGAAATGGTTCCAAGTGAAGTATGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACTGGCTAAACACCAACCCTCTCAAACAGAACGATCTATAATCATATTAATCTGTGTTTTTCCCCGGTTCGAATCGTGTTTTTTTTTAGTTTTTGCTATTTCGTTTATCAGACATTTGAATATCATTGCCTAATCTACAATGATTG



gi|167446749|gb|FD953108.1|FD953108 RS3GV77JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GACGAAGTGGTTTTGGCCATCAATTACCAACCAGAGGTGATGCTTAACTTCTTGAAAGACTTTGAGGCAAAGCTCGAAACCAAAATCACTTGCTCACAAGAGACTGAGCCTATGGGTACGGCTGGTCCTCTGGCTCTAGCTAGAGACAAACTGGTTGATGGATCTGGAGAGCCCTTCTTTGTCCTCAACAGTGATGTGATCAGTGAGTACCCTCTCAAAGAGATGATTGAGTTTCACAAAGCTCACGGTGGTGAAGCCTCCATTATGGTGACAAAGGTTGATGAACCGTCCAAGTATGGAGTTGTTGTCATGGATGAAACTACAGGAAAAGTTGAGAAGTTTGTGGAGAAGCCAAAACTGTTTGTAGGCAACAAGATCAACGCTGGGATTTACCTTCTGAACCCATCGGTTCTCGACAAGATTGAGCTAAGACCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTCTGTTATTCTCCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGCAAAAAAAAAAAAAAAAAAA



gi|156166015|gb|EW726161.1|EW726161 RS2BC24TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
.|.||.||||||||| ||||
GAGCTTTCTCTATTGCCTCTG

EST sequence (targeted fragment marked with yellow):
GGATACTTGGCCGCGGCGTCTCCGTTATCTCTTTCGAGTCCAGCTTTCCCGTCCGTCGGAGATTTCTTTCTCGCAACCGGAATCCGAAAATGCAGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTAGTCCTCAACATCTCAGTCGGTGAGAGTGGAGATCGTCTCACCAGAGCCTCTAAGGTGTTGGAACAGTTGAGTGGCCAGACTCCTGTTTTCTCCAAGGCACGATACACTGTTCGTTCTTTCGGTATCAGACGTAACGAGAAGATTGCTTGCTACGTGACCGTCAGGGGAGACAAGGCAATGCAACTCCTCGAAAGTGGACTCAAAGTTAAAGAGTATGAACTCTTGAGAAGGAACTTTAGCGACACTGGCTGCTTCGGTTTCGGTATTCAGGAGCACATTGATTTGGGTATCAAGTATGACCCGTCGACCGGAATCTACGGTATGGATTTCTATGTTGTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGGTGCAAAGCTCGTGTTGGAATCCAGCACAGAGTCACCAAAGATGATGCCATGAA



gi|161562100|gb|EY933780.1|EY933780 RS2D884JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
AAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCGGGCTGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTAATGCGTGGGGCAAGGATCAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGGAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATTTTATGTGGGATCTTCTTTTTTGTCTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTCTGTTATTTTTCTTTGGCCTTGAATAAAAGTATAAACAAAATGATGTATATCTTATCTTGTTTAGTCATTTGGTGTTTGTCTCTATTTTTTGTTAACTTATCAAAACATTTTTCAAATGAATATTATTTTTTTTTCCTTTAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAA



gi|166150752|gb|FD584040.1|FD584040 RS3FL88JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||||| | |||
AAGCTCTCTCTATTCTCTCTC

EST sequence (targeted fragment marked with yellow):
GGAGATCAATCTCTAAATAGACGTGTTTTCTCTCTCTTATCTCTCTCGAATTATTCAGAGAGAGAGCTTCGTCTTTTTACTGTGAGAAATCAACAGGATGGATGATGGGTTCTCTTCATCTATTCGCCGGATTCTCAACGGTATCGATTCCCGGCATTCGGGCCTTGACTCTGGCAAGCGGCGGTTTCGTTAACGTCGTCTTGGCCGGCTTCTCTTCCGGCAAGCAGCGGCTTCTATAGTGTTGATCTTGGCCGGCTTTCTTTCCGGCATGCGATGGCTTCTTCAGCGTCGTATTGGCTGGTTTATCTTCGTCCTATCGTCGTTTCATCTTCGATGTTGGGTAGATCTTTTACCCCGGATTTTCCGGTTTATTTGTATAGTATTACGTTTTATCTCTTGCGTTTATTGTTTTGTCTCTCGTTGTTGTTGGTGCGTTTGATCTAGAGCTTCCTGTTTCTGGTGTGTTCCGGTGCTCGATTTAACTCTCCGGCGGCGAGCTTCTTGCCGGTGACGTGGGCGACGTTTCTGCTTTTGAGCCACATGTCTTCTTCATCTCTCTCGGAGCAACACGTGGCTTTGTGTTGTCGGTAAAATGTTATTATTCACTTTTTGGGCTTTCGCTGTTTGGACCTTTTATTACCCCTACTTGTGTTTAATCTTTCGGACAGTGTTGTTCTTGTTGGCATTTTGGGCTTTTAGTAATAAAGAGATGATACAGAGGAAAAAAAAAAAAAAAAAAAA



gi|167447215|gb|FD950439.1|FD950439 RS3FT85JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GGATGGACATTGGACAACCCAAGGACTACATAACGGGCCTGAGACTCTACTTAGACTCTCTCAGGAAGAAGTCTCCAGCCAAGCTAACCACCGGTGCACACATTGTTGGGAACGTTCTGGTGGATGAAACCGCTAAGATTGGAGAAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCGGGCTGCGCGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTAATGCGTGGGGCAAGGATCAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGTATATCTTATCTTGTTTAGTCATTTGGTGTTTGTCTCTATTTTTTGTTAACTTATCAAAACATTTCTCAAATGAATATTATTCTTTTTTCCTAAAAAAAAAAAAAAAAAAAAAAA



gi|161571910|gb|EY942622.1|EY942622 RS3D507JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| |||| ||||
GAATTTTCTCTCTTGTATCTG

EST sequence (targeted fragment marked with yellow):
GTCTGTCAGGAGCAGTTTCGAAGATTCAGAGCGTGTCGACGGAGGCGTACAATGTAAACTCCCAAAAGGCGATGACTATTTTGAAAGATACTTCCGAGCAGCTCAGGATTCAAGCGGAGAAGGCTAAGGAAGAGTTGGGTACGAAGGCTAAAGAGGTTGGGGAGGAAGGGAGAGAGTATATTTTGAAAGCAGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGGATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAATCATATTTTTGAGAGAGTTGAAGTTGGTACTATTTCAGAGATCTACGTTCATGGGGTTTTTGACCACCCTTACTAGTGGTGGCGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACAAGCTGGAGAAGGAGATGAAACAGGCGAAGGGTTTGTAAGAAGAGAAGGATAGAGAGAAATGGTAACATGAGCATCATACGCTGTTTTAGTGATATCCGAAGTCTATGTTCTCTCTTTTAAGTTGTGTACAACTTTTGTGATCAATCATTTTCTAAACTTCTGTGTACTTATCTGTATTTGGATTTTGTGGAGTCCTTTTACCACATATCAACAAACAATAAACAGGTCAGGCCCAAAAAAAAAAAAAA



gi|167442315|gb|FD944567.1|FD944567 RS2H342JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| ||||||.||
GAATTTTCTCTCTTGTGTTTG

EST sequence (targeted fragment marked with yellow):
GAGTGTAGTAGATGTGACGATGTGATACATCTCAGAAGCGTGAAGCAACCCTCGCGTCTGTCAAGGAGCAGTTTCGAAGATCAGAGCGTGTCGTCGGAGGCGTACAATGTGACTCGCAAAAGGCGATGACTATTTTGAAAGATACTTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTACTAAGGCTAAAGAGGTTGGGGAGGAAGGGAGAGAGTATATTTTGAAAGCAGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGGATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAATCATATTTTTGAGAGAGTTGAAGTTGGTACTATTTCGGAGATCTACGTTCATGGGGTTTTTGACCACCCTTACTAGGGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACCAGCTGGAGAAGGAGATGAAACAGGTGAAGGGTTTGTAAGAAGAGAAGGATAGAGAAATGATAACATGAGCATCATACTCTGTTTTAGTGATATCCGAAGTTTGTGTTCTCTCTTTTAAGTTGTGTACAACTTTTGTGATCAATCATTTTCTAAACTTCTGTGTACTTATCTGTATTTGGATTTTGTGGAGTCCTTTTACCACATATCAACAAACAATAAACAGGTCAGAACCAAAAAAAAAAAAAAAA



gi|167442015|gb|FD945332.1|FD945332 RS2HD57JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| |||||||||
GAATTTTCTCTCTTGTGTCTG

EST sequence (targeted fragment marked with yellow):
GAAGATCAGAGCGTGTCGTCGGAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATACTTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTACTAAGGCTAAAGAGGTTGGGGAGGAAGGGAGAGAGTATATTTTGAAAGCAGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGGATACCTTATGGTCCGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAACCATATTTTTGAGAGAGTTGAAGTTGGTACTATTTCAGAGATCTACGTTCATGGGGTTTTTGACCACCCTTACTAGTGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACCAGCTGGAGAAGGAGATGAAACAGGCGAAGGGTTTGTAAGAAGAGAAGGATAGAGAAATGATAACATGAGCATCATACTCTGTTTTAGTGATATCCGAAGTCTGTGTTCTCTCTTTTAAGTTGTGTACAACTTTTGTGATCAATCATTTTCTAAACTTCTGTGTACTTATCTGTATTTGGATTTTGTGGAGTCCTTTTACCACATATCAACAAACAATAAACAGGTCAGAATCATCTGGAGATGCCACCAACAAAAAAAAAAA



gi|156176372|gb|EW736518.1|EW736518 RS3AG73JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|.|||.||||| |||||| ||
AGACTTTCTCTTTTGTGTGTG

EST sequence (targeted fragment marked with yellow):
AAATTTTGCTGCTTTGTATGTGTTAACATATGCAATCACTCTTTACAATGCATTTGCCTTTGAAGCTATGCTTAAAAGAAATGTTAGATCTTTGTATTTGTGAGAGAATAGCTAAGTTGCTGATAATGTTCTTACCTTTAGAACTTTACTGATTGACTCTTTACAGTGCATTTTCATTTGAAGCTTATTGAAAAGTTATTCACTTTATGAAACTTCAATCATGTTTCTGTTATTACATACTGTTGCCAAGCCATTTCTCTCAGTTCCAAGTTATTGAAGCTCGAAATCTGAAGAAAGGAGGCAAGCTTATTGGAGTTGACACGGTGTTGCTGGACGAGAAGTTAACCTTGATACAAGGTTCCATTGCCCCACACCAGCTTAACAGTTTCAAGAATCTGCTGAGGGAAGGAGTGTATGAGCTCAGTGTTTTTGATGTTGATAGAAGTAACAACTACTTCAAACGGTCTGTGTTCGATTCACCGAGCATACTACTTCAAACTTGAAAGTTGCAACATATAATGACTAAGGTCAATGCAGTGAAGTTCACTGACTCATCAGCTGTAGTTGTGTCAGCTGGCTTCGATCATTCGCAACGTGTATGGGACTGCAGATTTCAGGCGTTTCTTCCTTTCTTTCCAATTCAATTATTTTGTAACTAGATCTTAACCAACTTTGGTTTTATTCATGTGTGTGTGTTTTCTCTTTCAGATTACTAATAGTTTTTGGATAGTATGTTGTTTAACAAAGACTGAGATTATAGCCACTAATACTTTAGCATCTATGATATTCTATATTTTTATT



gi|167431327|gb|FD937305.1|FD937305 RS1H448JQB RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| |||| ||||
GAATTTTCTCTCTTGTATCTG

EST sequence (targeted fragment marked with yellow):
GTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGGATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCATGGTTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAATCATATTTTTGAGAGAGTTGAAGTTGGTACTATTTCAGAGATCTACGTTCATGGGGTTTTTGACCACCCTTACTAGTGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACCAGCTGGAGAAGGAGATGAAACAGGCGAAGGGTTTGTAAGAAGAGAAGGATAGAGAAATGGTAACATGAGCATCATACTCTGTTTTAGTGATATCCGAAGTCTATGTTCTCTCTTTTAAGTTGTGTACAACTTTTGTGATCAATCATTTTCTAACCTTCTGTGTACTTATCTGTATTTGGATTTTGTGGAGTCCTTTTACCACATATCAACAAACAATAAACAGGTCAGAATCAAAAAAAAAAAAAAAAA



gi|166132290|gb|FD561642.1|FD561642 RS1EQ42TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
GGGATCTAAAAGAAACCATATTGTTATTTTGTTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAAGCAGATCAAAGCTATGTTCTTTATCTTAACAATGATTATGGCTTTGGTTTGTCATCATCAATCAGAAGCTATGCCATATATTGGTCGACTGAAATGCATTGTATCACTAAGGAGCGTTGAGGGTTGTATGGAGGCCATAGAGAAAGCTACAAAGGGAGACAATCATGGTTTGGATAAGGAATGCTGCGACGCCATTCGTGGCCTCGCCAATGACTGTTTGCCGATTATCTTCTCCGGAGGACCCGCCATTGGCTTAGTCGTTCAAGCTGCTTGTTCCCGTATATTAGATGACGTTAATTAATTATAGAACATAATTATAATTAAAAAAAGAGCTGGGTCACTATACAATTGTATCATGCATGGTTTTTTTTTAAAAGGGGAAAAGGGAGACAGATATACAAACGTCAATAAACTGCTATATAATTTTCTAGAACTGTATGTATTATATAATTATTTTTCTTTCCTGCGAAGAGATATGAATAAAAAAGTAGTAATAATATCTAAAATTGTATTCAACTAAAAAAAATTGTATTGTCAGCTAGAATTTTATACGAAATAACCATAAAATCAAAAGTTAT



gi|167439403|gb|FD945477.1|FD945477 RS2HF46JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| |||||||||
GAATTTTCTCTCTTGTGTCTG

EST sequence (targeted fragment marked with yellow):
GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATACTTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTACTAAGGCTAAAGAGGTTGGGGAGGAAGGGAGAGAGTATATTTTGAAAGCAGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGGATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAATCATATTTTTGAGAGAGTTGAAGTTGGTACTATTTCAGAGATCTACGTTCATGGGGTTTTTGACCACCCTTACTAGTGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACCAGCTGGAGAAGGAGATGAAACAGGCGAAGGGTTTGTAAGAAGAGAAGGATAGAGAAATGATAACATGAGCATCATACTCTGTTTTAGTGATATCCGAAGTCTGTGTTCTCTCTTTTAAGTTGTGTACGACTTTTGTGATCAATCATTTTCTAAACTTCTGTGTACTTATCTGTATTTGGATTTTGTGGAGTCCTTTTACCACATATCAACAAACAATAAACAGGTCAGAATCAAAAAAAAAAAAAAAAAAAAAA



gi|166146991|gb|FD580205.1|FD580205 RS3FL88TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||||| | |||
AAGCTCTCTCTATTCTCTCTC

EST sequence (targeted fragment marked with yellow):
GGAGATCAATCTCTAAATAGACGTGTTTTCTCTCTCTTATCTCTCTCGAATTATTCAGAGAGAGAGCTTCGTCTTTTTACTGTGAGAAATCAACAGGATGGATGATGGGTTCTCTTCATCTATTCGCCGGATTCTCAACGGTATCGATTCCCGGCATTCGGGCCTTGACTCTGGCAAGCGGCGGTTTCGTTAACGTCGTCTTGGCCGGCTTCTCTTCCGGCAAGCAGCGGCTTCTATAGTGTTGATCTTGGCCGGCTTTCTCTCCGGCATGCGATGGCTTCTTCAGCGTCGTATTGGCTGGTTTATCTTCGTCCTATCGTCGTTTCATCTTCGATGTTGGGTAGATCTTTTACACCGGATTTTCCGGTTTATTTGTATAGTATTACGTTTTATCTCTTGCGTTTATTGTTTTGTCTCTCGTTGTTGTTGGTGCGTTTGATCTAGAGCTTCCTGTTTCTGGTGTGTTCCGGTGCTCGATTTAACTCTCCGGCGGCGAGCTTCTTGCCGGTGACGTGGGCGACGTTTCTGCTTCTGAGCCACATGTCTTCTTCATCTCTCTCGGAGCAACACGTGGCTTTGTGTTGTCGGTAAAATGTTATTATTCACTTTTTGGGCTTTCGCTGTTTGGACCTTTTATTACCCCTACTTGTGTTTAATCTTTCGGACAGTGTTGTTCTTGTTGGCATTTTGGGCTTTTAGTAATAAAGAGATGATACAGAGGAAAAAAAAAAAAA