| mature miRNA: TTTGCAGGCCGACAGCTGGAA species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74426476|gb|DT682651.1|DT682651 s13dFA63F09DS079_89197 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arundi TTTGCAGGCCGACAGCTGGAA EST sequence (targeted fragment marked with yellow): GGCACGAGGACAAGCTATCCTTCCTTCTGCACCAAATATGAAAGCACAGATTGTTGTAGCCAGGTCGTGGATGGACAAATGTCAGGCCTATCTGAGACCTAGACGTGATGAACTTGGGCCTGTAGTTCTTAAAGTTGATGACTTGAAGGATTTAATCTGTCGGCCTGCAAGTATGAAAGTCATTCTCGACACTTCAGCACTTAATTCTGTTCTCAGTAAAGTGGAAAAGTGGGAACACAATTCACTAAGTCTGTTGATCAATTTAAGAACCCTACTGAATTTGAATGTGGTCGGCTCTACAGTTGACCCACTTGAAAGAAATTTGGAGGAGCTGCAAAATAAAATCAGTGGAGCAATAGAAAGTGGATTATCTCTTGGTTTTGAGTTAAAGGTTCTTAATGAACTGAAAGATTGTTTGCTGACAGTTGGATGGATGTTGAGAGCACTGTCCTTCTGCTCCAGGATTCCCTTGTTAGAGGTAACATGCTGTTCACATGCTATCACTGTCATAACTGTCACTTGCTGCATCTGTCATTTTGATTAGTTCATGTATTCAAAGCAGGTTACTGTAAGGCTGCTTAGTATGCTCTCTATCTTAGACATGTGCTTCTA | |||||||||
gi|257181944|gb|GT038169.1|GT038169 CLS_cLiFproots_24a4_1_p18cLibkit5LD_H09 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTTGCAGGCCGACAGCTGGAA EST sequence (targeted fragment marked with yellow): TCTTATGCTTCCATGTTTTCATGCTGAAAGGAAAGAAGGAAGCAGACACAATACTACATCCATACATCGCAATACTGTTGACTCTCTTTCATCCTTTGAGGTAAGCACATCATCTGAGAAGATCCCACCAACTCCACATCGAATACCTCCAAGTCCGTCTAGATTCGCGCCATCTCCACAAATAGCTCGAGCCGGATCTGTTGACTTAACCGTCCAGCAGATTCTTAGGGCGACTCAGAATTTCTCACATTCGTTTAAGTTGGGTGAAGGAGGATTTGGGACTGTATACAGGGCTGTACTGTCAGATGGAACGGTTGTTGCAGTGAAGAGAGCTAAAAAGGATCAATTTGCAGGTCCTAGAGATGAGTTCAGCAATGAAGTAGAATTGCTTGCTAAGATTGACCACCGAAATTTGGTGAGATTATTGGGTTATACTGATAAAGGAAATGAGCGTATTATTATCACAGAATATGTTCCAAATGGAACTTTGAGAGAACACTTGGATGGCCAACATGGCAGAACTCTGGACTTTAATCAGCGCCTAGAAATTGCGATTGATGTTGCTCACGCACTCACTTACCTCCATCTGTATGCAGAGAAGACAATAATCCATCGCGATGTGAAGTCATCAAACATACTTCTGACAGACAGCTACCGAGCCAAGGTGTCCGACTTTGGATTTGCTAGAAGTGGCCCTAATGATACAGAGAAGACACACATCTCGACGAAAGTGAAGGGAACTGCTGGCTACCTGGACCCTGAGTACCTGAGAACATACCGGCTGACCCCTAAAAGCGATGTCTTCTCCTTTGGCATACTTCTTGTAGAAATTATTTCTGGTCGTCGGCCTGTAGAGCTGAAGCGGGCAGCTGAAGAGAGGATCGCTATCAGATGGACTTTCAAGAAATTCAACGAAGCAACATGAGAGAGATACTGGACCCGTTGCTGGAGGATCGCGTGACGAGGAGGTGCTGGAGAGCTTCTCAGTTTGGCGT | |||||||||
gi|257179612|gb|GT041371.1|GT041371 CLS_cLiFproots_33a1_1_c13cLibkit5LD_B07 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTTGCAGGCCGACAGCTGGAA EST sequence (targeted fragment marked with yellow): ATACCTCCAAGCCCGTCTAGATTCGCGCCATCTCCACAGATAGCTCGAGCCGGATCTGTTGACTTAACCGTCCAGCAGATTCTCAGGGCGACTCAGAATTTCTCACATTCGTTTAAGTTGGGTGAAGGAGGATTTGGGACTGTATACAGGGCTGTACTGTCAGATGGAGTGGTTGTTGCAGTCAAGAGAGCCAAAAAGGATCAATTTGCAGGTCCTAGAGATGAGTTCAGCAATGAAGTAGAATTACTTGCTAAGATTGACCACCGAAATTTGGTGAGATTATTGGGTTATACTGATAAAGGAAATGAGCGTATTATTATCACAGAATATGTTCCAAATGGAACGTTGAGAGAACACTTGGACGGCCAACATGGCAGAACTCTGGACTTTAATCAGCGCCTAGAAATTGCGATTGATGTTGCTCACGCACTCACTTACCTCCATCTGTATGCAGAGAAGACAATAATCCATCGTGATGTGAAGTCATCAAACATACTTCTGACAGACAGCTACCGAGCCAAGGTGTCCGACTTTGGATTTGCTAGAAGTGGGCCTAATGATACAGAGAAGACACACATCTCTACGAAAGTGAAGGGAACTGCTGGCTACCTGGACCCTGAGTACCTGAGAACATACCAGCTGACTCCTAAAAGCGATGTCTTCTCCTTTGGTATACTTCTTGTAGAAATTATTTCTGGTCGTCGGCCTGTAGAGCTGAAGCGGGCAGCTGAAGAGAGGATCACTATCAGATGGACTTTCAAGAAATTCAACGAAGGCAACATGAGAGAGATATTGGACCCGTTGCTGGAGGATCGCGTGGACGAGGAGGTGCTGGAGAAGCTTCTCAGTTTGGCATTCCAGTGTGCCGCTCCCACGCGGGAGGACCGTCCCACCATGAAAGGAAGTCGGAGAGCAGCTGTGGGAGATCAGGAAAGAGTACGGGAAGAGCCTAAGGAGGGTGTGAAACCATGGCAAACATGAGCTCTCTTTAACCACGATAGAGCATGCGTATTCTTTGTATACGCACTTG | |||||||||
gi|257185169|gb|GT047015.1|GT047015 CLS_cLiFproots_65a3_1_j19cLibkit5LD_E10 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTTGCAGGCCGACAGCTGGAA EST sequence (targeted fragment marked with yellow): CGTCCACAATTGGTTCGATGCCTCTTAGACCACAGAGTTTAGCATCTGAAACACGACCTCCCTTGCTTTCTCATGGAATGGTTCCGGCGAAAATTGGCACTGTTCCTACTCATCCCACAATACAACAGAATGCACCTGCACGCCAAATGCAACAAAACAAGGATATGAAAAATCCTTCGGCGAAATTGCATGGAAAGCAGGCTGCCCCTAAAACATCTACACCACCTGCCGCAAAGACTAATAAGAAATCAGGTGGCCAGAAGAAATCATTGGAAATGGCTGGCTCTGCACCAGCACCATCCAGCAAAAAACAAATGACAGGTGGAGCCTTCCAGGAACAGAGCATTGATCAACTTAATGATGTCACAGCTGTTAGTGGTGTTAATCTTAGGGAAGAAGAAGAACAACTGCTCTCCGCCCCGAAGGAAGAGAGCGCAACCTCAGAAACAGCCCGGAGAATTGTACAGGAAGAAGAAGAAAATCTCTTTCTGCGGAAGGGCCCTCTTCTGAAAAAACTAGCAGCAATCATTCTTAAATGTAACTTGAAGAACGCCAGTGCTGATGTTGAGCGTTGTTTATCAATGTGTGTGGAGGAGCGACTGCGACGATTCATAAGTACTCTCATAAGAGTTTCAAAGCAGAGAATCGACACGGAAAAGACTGGTCATCGACGAGTTATTACTTCAGATGTCGGCCGGCAAATTTTGCAGATGAACCAGAAAGCTAAAGAAGAATGGGACAAAAAACAAGCAAAAACTGACAAGAACAAGAAACAACTGAGGATGAATGCAGTGGTGCTGCTCATTTGGACAGAGAAAAAGGAGGAAAGTCGTCCAAGAATGCGAAGCCCAACAAGGAAGAAGATGATAAATGAAAACAACAGCTGCAAATGTTGCTGCCCAACAGCAGTTGGAGGAGTGGACATGCTG | |||||||||
gi|257184529|gb|GT040771.1|GT040771 CLS_cLiFproots_31a2_1_e16cLibkit5LD_C08 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTTGCAGGCCGACAGCTGGAA EST sequence (targeted fragment marked with yellow): CTGGACTTTAATCAGCGCCTAGAAATTGCGATTGATGTTGCTCATGCACTCACTTACCTCCATCTGTATGCAGAGAAGACAATAATCCATCGTGATGTGAAGTCATCAAACATACTTCTGACAGACAGCTACCGAGCCAAGGTGTCCGACTTTGGATTTGCTAGAAGTGGCCCTAATGATACAGAGAAGACACACATCTCGACGAAAGTGAAGGGAACTGCTGGCTACCTGGACCCTGAGTACCTGAGAACATACCAGCTGACTCCTAAAAGCGATGTCTTCTCCTTTGGCATACTTCTTGTAGAAATTATTTCTGGTCGTCGGCCTGTAGAGCTGAAGCGGGCAGCTGAAGAGAGGATCACTATCAGATGGACTTTCAAGAAATTCAATGAAGGCAACATGAAAGAGATACTGGACCCGTTGCTGGAGGATCGCGTGGACGAGGAGGTGCTGGAGAAGCTTCTCAGTTTGGCGTTCCAGTGCGCCGCTCCCACGCGGGAGGACCGTCCCACCATGAAGGAAGTCGGAGAGCAGCTGTGGGAGATCAGGAAAGAGTATGGGAAGAGCCTAAGGAGGGTGTGAAACCATGGCGAACATGAGCTCTCTTTAACCACGACCAGAGCATGCGTATTCTTTGTATACGCACTTGATGATGGTAATATTTTGTGCTCACAGAGTGTGCCCTTGAGCAATGTACAGACAAACCTGCCATCTGTTTCTTCCTTCCTCGACCACTTTCTAGTCTAGTACTCCCTGGAGTACTTTTTCTCCCGGGAGATATGGTCCATTTTGCTGGATGTGCATTTTGTGTTTGAAAACTTCCGCTGAATTCATATTGATTTAGATAATTGAAATAAAGGTTGTTTCTAGTTGAGCCAGTGTAATGTACTACCCCTACCCTAATAAGTAATAAAACATTTCGCCTCAGACAACGAAAAAAAAAAAAAAAAAAAATGAAAAAAAAAAAAAAAAA | |||||||||
gi|257172305|gb|GT037174.1|GT037174 CLS_cLiFproots_22a1_2_m13cLibkit5LD_G07 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTTGCAGGCCGACAGCTGGAA EST sequence (targeted fragment marked with yellow): AGTCCTAGATGTGATGAACTTGGGCCTGTAGTTCTTCTTAAAGTTGATGACTTGAAGGATTTAATCTGTCGGCCTGCAAGTATGGAAGTCATTCTCGACACTTCAGCACTTAATTCTGTTCTCAGTAAAGTTGAAAAGTGGGAACATAATTCACTAAGTCTGTTGATCAATTTAAGAACCCTACTGCATTTGAATGTGGTCGGCTCTACAGTTGACCCACTTGAAAGAAATTTGGAGGAGCTGCAAAATAAAATCAGTGCAGCAATAGAAAGTGGATTATCTCTTGGTTTTGGGTTAAAGGTTCTTAATGAACTGAAAGATTGTTTGCTGACAGTTGGATGGATGTTGAGAGCACTGTCTTTCTGCTCCAGGATTCCCTTGTTAGAGGATGTTGATAGAGCAATTGAAGAAGCTGTCAACCTTCCTGCCTCATTGTTAAACTGCCCTTTAGCTACACTGTTGATGAGCGGATTATCTTGGCTAAGAAAAGCACTTGTTTTGCTTCCTGAGTCTGAAAAGCCTGTAAAACCTAAATTGGAAAACGCTGAAAATATTTTAGCAGAACATCAGAAAATTGCTGTTCCTTATTCTATAATGACTGCCGAGCTTGAAGATGCTATAAGCAAACATAAGTCATGGACAGAGCAATGTCATGCTTTCTTTATGTTGCCCCGATTACCAATCTTGGGCTGGACTACTAAGGCCTAGAGACAGAGGCCAGTCCGTTGCATTTGATTGTTGTGAAATGGATAGGGTTGTTCTTGATATTAAAAAGATTGATGGGTGGTTCAATCAATGCCGCTGTACTCTGTCGGCGGATGTCAATGATAATGGTTCTTTGCTCTCCATTCTTCAAAAGATCAGCGGATCATTGGACATGCTTCTATGCTATATGCCGAGGATTGTAAAAAGAAAGAGTTCTGTGTCATCTGTTCATGTGATGTTGTAGCCTCTAGATGTGTAATATGTCAAGACTGGTATCACAGCTCTTGTGTGGAATCACTGCTTGCTTCTAACCAACGACCAGTGAATATATTTGGCCCATTTGTT | |||||||||