| mature miRNA: TTTGGACTGAAGGGAGCTCCT species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188272112|gb|EY731228.1|EY731228 CS00-C3-704-040-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD TTTGGACTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAAAGGCTCGGGTGTGTCCCTCTCTCGATCTGAATTACGCGTGAATAGAGACGAGGCTCGGGAGCGGGCAAGGGAGAGAGCTGCAAAGGAGAAGGATCAGAAAGAGAACGAGTCCCAGATCAATGCAAATCGGCACCACCATCACAATGTGAACCCCATTTCACAAAGCTCATCTTTCACTGAACTACTCACCGGTGGTATTGGTGGTAGTGTTAATAATAACAACAATACAAGCCCGACCACTGCTTCTTCTCAGCAGCAGAATGAAGAGCCAAATTTTTTCCACAAGGCAACAACAGCAGCAGTGCGGCCTTGGCCTGCAGCTCCAATGGACTATTTCAACTCAGGACTACTAGGGCCATCTTCGTCTCGGCCACCACATCATCATCTTTCGGGGCAAATCCAATTGGGAAGCTCAAATTCTCTCCCACAAGCAATGCAGATCCCACCATTCAGTGTAACCAATGAAAACCACCATCAAGAAATGCAACATTTTTCATTTGTTCATGACCATTTAATCCCAGTAACAGCCACCCAACCGGGGCCTGGCGGGGGCGATTACTTCACAATCTCTTCCAGCCTTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCATCACCGTCTGTTTTCCCTCACATTCAGAGGTTTGGTTCTTCTTCTCCTATAGACGGATCCAATATTTATGTACCTTTCTTAATCGGTACTGCACACCCGTGGAAAATCACAACANCACCACCACCACAGTTCCCACTGGATTTGATGGCCGCTTGCACTCTACTAGGCGATGGAAGTAGGCATCAGATTCAACCAGAAGACAAGGCAGACTGATTTGTCCTAAACACTCTTCTCTGCTCTCTCTCTGTGAGATAAATACTGCAGAAT | |||||||||
gi|209924563|gb|DC887985.1|DC887985 DC887985 EIC Citrus sinensis cDNA clone EIC1215 5', mRNA sequence TTTGGACTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GTAAATTAACTTANTAATGAATTAAAAAAAAAAAAAGAAAAAATAAAAAAAGCTAGCGTTCTTGATCTGGTGGGTGCATATCAGTAACTTGATTGTTGAGCCAATAAGAGCCCTTCAGTACCTGGAAGAAAGATAACGCAGAACAATATAAATATTTCAGGGGAAAGGCCAGTTAGAATAATGAGATGTCCATGAATGGAGCTCCCTTCACTCCAATACCAAAAAGATCAAGGTAGCCTCGTCTCCCAGTTCATGCAAACCCTTAGACTGCGCCACAGTATTGAGTCTGCGCAACCACGGGTGTTCATGGACTAGCAGCCGTGGCCTACCATCACCTCCTTTCAGACTTGGAGTTCAGAGAGCTCCATTAAAACCCTAATTGCAGTTTCTAAACTACTAAACAAACTTCATTGCACCAACATAATATTGTAATGCTAAAACTTCAAAGCTATGCATGAAGTAAAAGAATAAAATTC | |||||||||
gi|188349331|gb|EY665994.1|EY665994 CS00-C1-102-011-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) TTTGGACTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): ATTCCCGGGTCGACCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGAAGGATTTTGGTGTCTGATCGGGCTCACCTGCTCTTTGATTTTCATCAAGAGATAGATGGACTTAGGGAAGCTGAGCTTGCTAAATCATTTATTGGCACAACCAAGAGAGGAATAGGACCTGCTTACTCCAGCAAGGTGATCCGAAATGGTATTAGAGTATGTGACTTGAGGCACATGGATACTTTCCCACAGAAGCTTGATCTNTTTATNNNTATCAGATGCCAAGCCTTGCAAAGATTCCCAGGTTTTAGTATACCCCAGACGTTCTCAGGGAAAAAGTGAAAAATACAAGAAGATTGCCAAGAGGCTGGAACCTTTCATCCCGGATACGGGGCTTTTCCTGAAAGGAGTCCCTTTGGTCCAAAAAACAGAAAAATTTCCGGGTTAGAAAGGNNNNNCAGGCGAGCCAGGCGGGGAATTAGCCTTCGGAATTTTTCCCTTTTTGGAGCTTCCCCTTNNNNCNNNNNNNNNNNNNNNNNNNNAAGGGGNNNTTAGGATNNNNNTACGTAACGAAGANNNNNNNATNCAGTTCATGAGGGGNNAGAAGAAGAATANNNNNNAGAAAGAAAGAGAGAGGGGNNTTTGCGAGGGAGAGTGTTTGGGANAAGAGGAGGAGAGACGACAAGGNTTANAGAGGGGGAAAAGACATGTGNNNNNNNNCGNCNNCNNCCCCTCCGGGAGGAGGNNNNNNNAGGTGAGAGNCAATGACAGAAGACATNNNCNTNTCTATNAGAGCACNNANNTGNAGAGAGACCTCACNNCTTATAG | |||||||||