miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTGGAGAGAAAATGGCCACA
species: Pinus banksiana
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|292528426|gb|GW748898.1|GW748898 PBA0116.CR_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0116_A10 3', mR 

TTTGGAGAGAAAATGGCCACA
||||||| |||||||||||
AAACCTCACTTTTACCGGTAG

EST sequence (targeted fragment marked with yellow):
CGATCAAGCGTTTACGATCCATTCTCACTGGACATATGGGACCCTTTTGTAGGGGTTAATTCTCCATTCTTCAGAGATTTAGGGCACTTTCCAAGGGATGATGCAACAGCCATCGCCAACACTCAGCTCGATTGGAAAGAAACACCTGATGCGCACATTTTCAAGGCTGATCTTCCAGGTCTGAAGAAAGAGGAGGTAAAGATTGAGGTAGAAGACGACCGAGTTTTAAAGATAAGCGGTGAACGCAAGAAAGAAGAAGAGCAAAAGAACGACCAGTGGCACCGAATTGAGCGGTCCTACGGCAAATTTCTGCGGCGTTTCCGGCTACCAGAAAATACGAAGGTGGACGAGGTGAAGGCTTCAATGGAAAACGGCGTGTTAACTGTCACTGTACCCAAGCAGCCTCAGCCTAAATCTGAAGTTAGGGCCATTGAAATCTCGGGTTAACTGAACGGAAAATATTTGTAAATGGCGGTTGTTTTGTTTTGGGTTTTTAGAGGGTTTGGGTTTTGAGATGGTACTGTAGAGCCCTTGCGGCAAAGACATGGTAGTCCTAAATGTAAATGGTTAACGGCGTATAATCGGCTTTTAGAGGGTTTGGGTTTTGAGATGGTACTGTAGAGCCCTTGTGGCAAAGACATGGTAGTCCTAAATGTAAATGCGTATAATCGGCTTATAATCGTAGAAATAATGCAACGGCGTATCGGCTTATAATCGTAGAAATAATGAAATAGATGGCCATTTTCACTCTTTGATTGTAATCGGCTGTATTGCATTTGTTTCTATCTAATGATAGACGGTTCGTAATCGTAGAAACAATGAAATAGATGGCCATTTTCACTCCAAAAAAAAAAAAAAAA


gi|292549188|gb|GW768484.1|GW768484 PBA0218.CR_D21 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0218_D21 3', m 

TTTGGAGAGAAAATGGCCACA
|||||||| ||||||.| |||
AAACCTCTATTTTACTG-TGT

EST sequence (targeted fragment marked with yellow):
TGCCACTTCGATGAACAATGTCGGCAACCCAGTGACAAACGATTCCAACATAGGCGCTTGCCCTTTTGACATGGGAGCCGGGGAAGTGAGCCCTGTGAGAGCACTAAATCCGGGCCTCGTTTACGACACAACCGTGGACGACTACCTGCTGTTTCTCTGCAACTTGGGATTCAAAGCATCACAGATTGCTTCCGTGTCGGGTAACCAGGCCTTCAACTGCTCGCCGAAGGCCAGCGACGAGATGATCAGCGACATGAACTATCCGACCATCGCCATCTCGGGCTTGAAGTCCACCAGATCTGTCAAGAGGACACTGACAAGCATAGGATCCGCCTCTGGTTCCGTCTACAAAGTAACCATAGATTCGCCCCAGGGATTAGATGTGAAAGTGTCGCCGAGCCAGCTCGCTTTCTCGGGGACTTCTGACAAGATAACATACAGCGTGATGTTTACGGCTAGCGGAAATGCCAGCAAGGGATACGCGTTTGGGTCCATCACTTGGGCGGATGGAACCCACAACGTCCGGACGCCTTTTGCCGTTAACATATCGTAACAGGTGATGAAGACGGGAGCAAGTGAACATCGGTTTCCATGGAATCAGTGGCCGCCCCATTTCCATCGGGTGGCCCCAATGCACGGGTCCTCCATGTATTCTTTGCTTTCCCATCTTCGATTTGTTTGTTTTTGCTTTGCTCTGCTGGAATATAATAATCTCCAGCTCTTCTAAATATTATCAAAGGTGTATGGATATAGATTACAGTTTTCTCGTCCACTACTGAAAAATGTGTCATTTTATCTCCAAAAAAAAAAAAAAAA


gi|292547646|gb|GW762717.1|GW762717 PBA024.CR_N14 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA024_N14 3', mRN 

TTTGGAGAGAAAATGGCCACA
.||||||| |||||.| ||||
GAACCTCTGTTTTATCAGTGT

EST sequence (targeted fragment marked with yellow):
GGGGCAATGCCATCATACAACATGTTGAAAAGGACAAGAATGGCACCATTATACATCTTAATGGAGTGCTGCACCTTGAAGGCTCCGTCAAAACAACAAAGTTAGAGGTTACCTGGCTTCCAAATATATCTGAGCTGGTGAATCTGTCTCTTGTTGAGCTTGATCATTTAATTACTAAAAAGAAGCCCGAGGAAACTGATAATTTTCTTGAAGTTCTCAATCCGTATACAAGATGGAAAAGTCTAGCTATAGGTGATGCAAATATGCGTAACCTAAAAAGAGGCGAGATTTTACAGCTGGAAAGGAAAGGATATTTCCAATGTGACGTGCCCTATTTGAGGCCATCAAAGCCTATAGTTCTGATTGCAATACCTGACGGTAGAAAGCAGTCTGTCTTGAAAAGGCCTTCCTCTTGACTGACTGTGTTTAACGGTGTCTGAAATGCAAATTGAGTAGTACTAAACTTTTATAGTTGCTTTACAGTGGTAGAGAGCTGGCTGTCTTGAAAGGGCCATTCTCTTGACTAAGGCATAATTGGTGTCAAACACATTAAGAGTTGGATTTTGTCATTCTAACTGTAATTTATTGAAAGAATAGCATCTACTATTTTGGGCAATTGGGTGTAAATGAATTTGGTTAAGGCTGTGTGACTATTTTGTCTCCAAGGGCCCTAGAGAGTGTAGTTTTATTATTTCTTAGCTTGAGCTAAGAGAGTTGCACAGCTTGTATTTTGTAACTTAGATTGAATTCTGAATCTGGACACTTTGGTTGAGCTCTACAGCAATTTGCAGTCTTATTTGGCCAAAAAAAAAAAAAAAA