| mature miRNA: TTTGGAGAGAAAATGGCGACAT species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|67557719|gb|DR098364.1|DR098364 STRR1_45_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_45_B03_A033 3', mRN TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): GAACCAATACTTATTTATTAGATAAATGGGACAGAAGCCCTTACAGTAAGGTTGTCTCTAGCAGATACAACGCACAACGTCCCTATTATATGAATGGGATAGTACGCTTACAATACAGTCAACTTCTTAAGATATTTGCAACATAATATTTATAACCATACATCCGAGCATATACCATTTAAGACAGACAGGAAAATGACGATTTCGCTTTGTTCGCAGAAAACAATGTTAAAAATTATCAGACGGCATCCTTCCATGAAGAGAAAGGAGGTGTTTCTGAGTTCATCCACGTGAAATCCTGGTGATCATCAGCATATCGATTTCCTGAGAATCCATAATTGGATAATATATTTTCTATTTCCTTCATCTCATCAGGTGTGATCTTCACGGAAAGAGCACCAATATTTTCTTCTATATTCTTCACTTTAGTGGTTCCAGGAATTGGTGAAACGTCATTTCCCTGATGATGAATCCAAGCCAGGGAAAGTTGACTGGCGGAGCATCCCTTCCTGGAAGCTATTTCAGCTATTTTTTGCAATGTCGCCTTGTTCTTTTCAAA | |||||||||
gi|49009531|gb|CO198356.1|CO198356 GEO1_13_C10.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA clone GEO1_13_C10_A029 TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): AACAAAACAAAACACTTTATCTACGATTACATGATCATGTTTTTAAAGACATCAATAACATGACCACCGCTGTCAATAACATGTTCATGAATAACTACCCATGGAGATACCCAAGACATACACTTGAGTGACCAAATCCCTTTCATGTATGCCCGCTATAAAAGAAGGGAGGAAATAACAAAATCATCTACCAGTAGCTAATTAGTCAGGTTACAATTTTTTTCCAAGTCAGCCCAAAACTGATACAGGACCATTTCGGGCAACCAAGGCTTCGAAATATCTACTCTTGATCGTCATCCTCTCCACTTTCATCATCATCCTCGTCATTTACCTCGGACTTGGACTTATCTGACTCTTCAGCACTGTCACCTGCAGGGCTGGGTTGTTTGTTGTTATATGCTGCCATGTTCTTTTCAAACTCTGTTTTCCTTTTTGCAGCCTTGGCAACATATGGAGCCTTATCGGCTTCTGACATTGACTTCCATTTGTCACCTCCAGCTTTTCCAACAACTGATACAGATTTGACATTAGGATTCTTTTCCTTGTAGGTTTTCCTAAACTCTTCCATAAA | |||||||||
gi|14515677|gb|BI077020.1|BI077020 NXPV_086_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_086_B08 5' TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): CTAAGGCCCAGCTCGTAGGCTCTCTGCACTCGTGGGATCAGGATGGATCATCCACACAAAATATTGACACCAGGCACATAATCCTACTCTCTGAAAAACATATTGGATCGGCTTCCTTGCTATTCTGTATCCAATGGCACACTTTAACTTGACCCCAGCTCGTGAAGCTGTATCTTTTGCATCCTCATCCACATTCCCCTCACACCGCAAAATCAAAAGATATGTGTGTGATGTCTTCAAGNAATCCCAAAGAAAAAAACTTAAATCGACGGGGCTATTCTANNANNCTCCGCTATGTGACCATTTTCTCTNCAAACTNNNNNGAATCAACTTGTTGTTTCAAGNACTCTGTCCATG | |||||||||
gi|67486920|gb|DR088594.1|DR088594 RTAL1_3_B09.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone RTAL1_3_B09_A029 3', mRN TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): CCTGGTGCCGAATTCGGCACGAGGCCAATACTTATTTATTAAATAAATGGGACAAAAGCCCTTACAGTAAGGTTGTCTCTAGCAGATACAACGCACAACGTCGCTATTATATGATATTTGCAACATAATATTTATAACCATATATCCAAGCATATGCCATTTAAAACAGACAGGAAAATGACGATTTCGCTTTGTTCGCAGAAAACAATGTTAAAAATTATGAGACGGCATCCTTCCATGAAGAGAAAGGAGGTGTTTATGAGTTCATCCACGTGAAATCCTGGTGATCATCAGCAACTCGATTTCCTGAGAATCCATAATTGGATAATATATTTTCTATTTCCTTCATCTCATCAGGTGTGATCTTCACAGAAAGAGCACCAATGTTTTCTTCTAGATTCTTCACTTTGGTGGTTCCAGGAATTGGTGAAACGTCATTTCCCTGATGATGAATCCAAGCAAGGGAAAGTTGACTGGCGGAGCATCCCTTCCTGGAAGCTATGTCAGCTATTTTTTGCAATGTCGCCTTGTTCTTTTCAAAATCTCAACTGTAAGC | |||||||||
gi|74164626|gb|DT634557.1|DT634557 EST1149488 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMG727 3' end, mRNA TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): CGGCCGGGGGATCATTACCAAAATAGCATCTGAGGAGGGTAGGCACTCTGCCCTCGTCAGATCATTCAGATATCAGCACTGTTTTATTTCCAATCGATTGGCTAACCAATAAGGTTTTGATACAGAGATAAGAGTAGCAAAGGCCCAACTTGTAGGATCTTTGCACTCGTGGGATCGATCATTCGGTGCTGTTTTATTTGGGATCGATCATTCAGTGCTGTTTTATTTTCAATCGATTGGCTAACCAATAAGGTTTTGATAGAGAGATAAGAGTAGCAAAGGCCAACTTGTAGGATCTTTGCACTCGTGGGATGGATCATTCGGTGCTGTTTTATTTCCAATCGATTGGCTAACCAATAAGGTTTTCATACAGAGATAGGAGCAGCTAAGGCCCAGCTCGTAGGCTGTCTGCACTCGTGGGATCCGGATCGATCATTCACACCAAAATATTGACACCAGGCACGCAATCACAGTCTCTGCAAAACATATTGGATCCGCTTCCTTGCTATTCTGTATCCAATGGCATACTTTAACTTGACCCCGGCTGGTGACGCTGCATCTTTTGCATCCTCGTCCACATTCCCCTCACACAGCAATATCAACAGCTATGTGTGTGATGTCTTCAAGGAATCGCAAGGAAATAACTTAAATAGAAGGGGCTATTGTAAAAGCCCCTAGCATGTGGCCATTTTCTCTCCAAAATACGCTGAATCATGTCGGTGTTTCATGGACTCCGTCCATGTGGCGATCTTCTGCACAAGATATGAAGAATCAACACTGATTATTTTGGT | |||||||||
gi|48942798|gb|CO169926.1|CO169926 NDL1_10_C04.g1_A029 Needles control Pinus taeda cDNA clone NDL1_10_C04_A029 5', mRNA sequence TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): GGTTGAGATGGTTATTTTTTCTGCCGATTTTTCACATTGATGGCCGTTGCGGGTTCACTTCTGGGTTCTGTTCTGTGCTTCCTGAAGGGGGGAGTTTATGTGTTTGAGTCCTTCAGGGCATGGTATTCTTGCTACTTGCATCAGCATGCCGCAGGGAAAGTCATATTACTTCTTGTTGAAGCTCTTGATACCTATCTAATGGGCACTGTCATGCTCATCTTCGGTATGGGCCTTTATGGGCTTTTCATAAGCAGCCTAGATGTCTCTGCTGAAAGCTCTGGTTCGGAAGATTCAGGAACTCTCTTTGGATCTAATTTATTTGGCCTTTTCAAATTGCAGGAAAGACCAAAATGGNTTGAAAATACAANTCTCTGGAGGAGCTAAAGACTAAACTCGGACATGCAATTGTAATGGTCCTCCTTGTGGGAATGTTTGATAAGAGCAAGAAAATTCCCATACACTCTCCTCTGGATTTACTGTGCTTCTCAATGTCAGTTCTCTTGGCCTCGGGATGTCTCTATTTTCTCTCGAAGCTCCGCTCTGTCGAGTAAAATAAAGTGGATAACTTCTATAGTTTCCACGTAGTTTTTATATTAAATTCTGACAAACACAAACTTGGATTTTTTTCTCTTAAAAATTTAGTGTTTGTCTAAACGGAACAGTTGTTGCAGACTACCTACCTACTTATTCTACTCATATGTTTAAGCAGATCTGTCCTTTGAGTGTAGT | |||||||||
gi|68084041|gb|DR177676.1|DR177676 RTMNUT1_6_F03.g1_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_6_F03_A029 5' TTTGGAGAGAAAATGGCGACAT EST sequence (targeted fragment marked with yellow): CACTCCAAAACCCTACAGGTCCTCTGCAACATTATCCCCAGAACCACACAGGTCTGCATTCGGACAGTTTCCTCCCAGCTCACTGTCTCTGCAGTTCTGTATGCTCGTCGCATGTCGCCAATACCCACAAAAATTTCCCCTCTAAAATCCCTACAATAGGCCCCAGAGCCCATGCAGGAAGCCCGATTTCGCAATTTTTTCTCCAAGAAGAAGAAAATGATGACTTCTATTCGGACGATGTTATAAAGGAAGAGTGTGGCGTGGTGGGAATTTATGGCGATCCGGAGGCGGCACGGCTCTGTTATTTAGCGCTGCACGCCCTGCAGCACCGTGGTCAGGAGGGGGCAGGAATCGTAACCGCGACCGATGGGGTTTTGCATACCATAACCGGTGTGGGCCTCGTTGCTGATGTTTTCGACGAGTCCAAGCTCAACAAGCTCCCGGGGAACTCAGCCATCGGTCATGTGAGGTACTCTACTGCTGGTTCTTCTATGCTTAAAAATGTCCAGCCATTTGTGGCCGGCTATAAGTTTGGCTCTCTTGGTGTTGCGCATAATGGGAATTTAGTTAACTATCAGACCCTTCGGGCTAGGCTTGAAGAAAATGGTTCGATCTTCAATACTTCTTCCGATACAGAGGTTGTGCTTCACTTGATTGCTATATCGAAAGCTAGGCCATTTTTGCAGCGGATTGTCAATGCATGCGAGCAGTTAGAGGGGGCTTATTCTATGGTTTTCCTTTCTGTGGATAAATTGGTGGCTGT | |||||||||